Wall clock time and date at job start Tue Mar 31 2020 10:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00122 * 2 1 4 4 N 1.46901 * 109.47111 * 125.53408 * 3 2 1 5 5 C 1.46897 * 111.00444 * 192.50192 * 4 3 2 6 6 C 1.50698 * 109.47280 * 66.04460 * 5 4 3 7 7 H 1.07998 * 119.99576 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00383 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00256 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99821 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47126 * 90.00015 * 10 8 6 12 12 H 1.48502 * 109.47050 * 210.00243 * 10 8 6 13 13 H 1.48498 * 109.47163 * 330.00063 * 10 8 6 14 14 C 1.46905 * 110.99810 * 68.54756 * 4 3 2 15 15 C 1.50700 * 109.47111 * 200.72254 * 14 4 3 16 16 O 1.21289 * 120.00183 * 5.97034 * 15 14 4 17 17 N 1.34776 * 120.00031 * 185.96929 * 15 14 4 18 18 C 1.46931 * 120.55950 * 354.06935 * 17 15 14 19 19 C 1.53430 * 107.78947 * 224.72833 * 18 17 15 20 20 C 1.52852 * 108.86867 * 296.80431 * 19 18 17 21 21 C 1.50586 * 110.50849 * 51.40521 * 20 19 18 22 22 C 1.38515 * 118.93633 * 159.42194 * 21 20 19 23 23 C 1.38117 * 120.30008 * 179.57153 * 22 21 20 24 24 C 1.38300 * 120.16067 * 0.29544 * 23 22 21 25 25 C 1.38035 * 119.90338 * 359.52196 * 24 23 22 26 26 C 1.38573 * 121.50202 * 339.17058 * 21 20 19 27 27 H 1.07998 * 119.99906 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00243 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99889 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47404 * 5.53428 * 3 2 1 31 31 H 1.09004 * 109.47479 * 245.53260 * 3 2 1 32 32 H 1.09000 * 109.47533 * 186.04701 * 5 4 3 33 33 H 1.09007 * 109.46744 * 306.04508 * 5 4 3 34 34 H 0.96998 * 119.99822 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47133 * 80.72689 * 14 4 3 36 36 H 1.09001 * 109.46990 * 320.72496 * 14 4 3 37 37 H 1.09000 * 109.79117 * 344.29354 * 18 17 15 38 38 H 1.08991 * 109.79896 * 105.09290 * 18 17 15 39 39 H 1.08997 * 109.57030 * 56.61734 * 19 18 17 40 40 H 1.08995 * 109.56903 * 176.86886 * 19 18 17 41 41 H 1.09000 * 109.27061 * 291.13660 * 20 19 18 42 42 H 1.09002 * 109.26439 * 171.66596 * 20 19 18 43 43 H 1.08000 * 119.84652 * 359.55086 * 22 21 20 44 44 H 1.08007 * 119.91835 * 180.02562 * 23 22 21 45 45 H 1.08007 * 120.05011 * 179.78747 * 24 23 22 46 46 H 1.08004 * 119.98363 * 180.26342 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0054 1.3266 1.1271 5 6 3.5404 2.6780 1.3404 6 6 2.4291 3.5939 1.7844 7 1 1.4258 3.2103 1.8972 8 6 2.6930 4.9215 2.0466 9 7 1.7233 5.7207 2.4345 10 14 4.4282 5.5851 1.8507 11 1 4.6156 6.0789 0.4628 12 1 4.6421 6.7013 2.8064 13 1 5.4063 4.5025 2.1272 14 6 4.0902 0.3568 0.9251 15 6 4.7255 0.0303 2.2521 16 8 4.2479 0.4682 3.2773 17 7 5.8245 -0.7485 2.2996 18 6 6.3378 -1.3912 1.0821 19 6 6.6803 -2.8461 1.4288 20 6 7.7973 -2.8558 2.4722 21 6 7.4427 -1.9645 3.6330 22 6 8.0843 -2.1562 4.8456 23 6 7.7872 -1.3492 5.9264 24 6 6.8416 -0.3473 5.8062 25 6 6.2004 -0.1471 4.6003 26 6 6.4968 -0.9592 3.5115 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3594 2.1312 0.0991 31 1 2.6138 1.4069 -0.9354 32 1 4.3133 2.6458 2.1083 33 1 3.9682 3.0505 0.4096 34 1 1.9092 6.6546 2.6193 35 1 4.8398 0.7836 0.2587 36 1 3.6861 -0.5534 0.4820 37 1 5.5762 -1.3670 0.3028 38 1 7.2328 -0.8719 0.7398 39 1 5.7983 -3.3423 1.8336 40 1 7.0125 -3.3669 0.5308 41 1 8.7203 -2.5001 2.0143 42 1 7.9442 -3.8741 2.8323 43 1 8.8199 -2.9405 4.9463 44 1 8.2915 -1.5039 6.8689 45 1 6.6082 0.2805 6.6536 46 1 5.4647 0.6377 4.5039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292185943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:36 Heat of formation + Delta-G solvation = 39.888799 kcal Electronic energy + Delta-G solvation = -26560.470720 eV Core-core repulsion = 23030.310849 eV Total energy + Delta-G solvation = -3530.159871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01155 -38.67471 -36.85613 -36.44762 -33.52793 -33.17758 -32.29673 -30.69323 -30.17370 -28.45923 -26.99559 -25.71712 -24.12434 -23.17146 -22.79155 -20.96432 -20.30701 -19.44494 -18.78170 -17.23906 -16.98752 -16.75589 -16.03568 -15.73413 -15.19277 -14.81520 -14.65013 -14.52132 -14.09228 -13.98112 -13.54461 -13.46108 -13.39327 -13.17723 -12.82540 -12.71069 -12.47809 -12.19722 -12.06488 -11.72824 -11.51187 -11.40114 -11.34370 -11.19870 -10.85899 -10.76159 -10.68562 -10.20138 -9.99277 -9.84564 -9.36396 -9.08183 -8.98782 -8.62145 -8.54264 -7.75887 -7.47113 -6.01717 -3.98120 1.37528 1.50827 2.62149 2.83983 2.86680 3.28679 3.37457 3.40255 3.89022 4.36481 4.44690 4.53817 4.58605 4.73191 4.83233 4.94879 5.09873 5.18249 5.23417 5.26495 5.30508 5.31675 5.39688 5.45081 5.48775 5.51158 5.59243 5.63874 5.72901 5.81878 5.88048 5.97001 6.19162 6.20148 6.31428 6.42466 6.49723 6.65594 6.73502 6.78355 6.88242 6.97591 7.20435 7.25832 7.36242 7.60827 7.80989 7.93650 8.38990 8.66620 9.07102 9.59769 11.11513 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.004569 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.999410 B = 6126.571395 C = 7583.314483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 C 0.085 3.915 4 N -0.504 5.504 5 C 0.164 3.836 6 C -0.503 4.503 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.871 3.129 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.036 3.964 15 C 0.511 3.489 16 O -0.471 6.471 17 N -0.565 5.565 18 C 0.102 3.898 19 C -0.135 4.135 20 C -0.074 4.074 21 C -0.128 4.128 22 C -0.103 4.103 23 C -0.148 4.148 24 C -0.101 4.101 25 C -0.151 4.151 26 C 0.167 3.833 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.031 0.969 32 H 0.033 0.967 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.507 -19.001 -3.653 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.160 4.160 3 C -0.042 4.042 4 N -0.228 5.228 5 C 0.038 3.962 6 C -0.541 4.541 7 H 0.100 0.900 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.699 3.301 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.193 1.193 14 C -0.096 4.096 15 C 0.300 3.700 16 O -0.342 6.342 17 N -0.292 5.292 18 C -0.020 4.020 19 C -0.173 4.173 20 C -0.111 4.111 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.167 4.167 24 C -0.119 4.119 25 C -0.171 4.171 26 C 0.072 3.928 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.000 1.000 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.858 -18.635 -2.702 22.253 hybrid contribution 1.517 0.584 -0.695 1.768 sum 13.375 -18.051 -3.397 22.722 Atomic orbital electron populations 1.23759 0.95936 1.01534 1.01506 1.22912 0.96068 0.97993 0.99071 1.21249 0.95766 0.96281 0.90873 1.61678 1.13585 1.07756 1.39794 1.20257 0.96905 0.84336 0.94661 1.20947 0.95999 0.92399 1.44752 0.89980 1.24849 0.96516 0.96841 0.94908 1.69885 1.31740 1.05509 1.46719 0.86920 0.86084 0.79031 0.78074 1.20377 1.21046 1.19339 1.22009 0.95539 0.99289 0.92757 1.21076 0.78702 0.77520 0.92715 1.90571 1.59747 1.49088 1.34782 1.45912 1.27309 1.48386 1.07547 1.21956 1.00349 0.93304 0.86436 1.21864 0.99725 0.95981 0.99724 1.20347 0.98372 0.98832 0.93543 1.19405 0.99995 0.97337 0.96314 1.20777 0.99620 0.99685 0.92080 1.21014 0.99654 0.97446 0.98628 1.21134 0.95671 0.97660 0.97481 1.22317 1.02116 1.00869 0.91777 1.17726 0.93900 0.94905 0.86232 0.88223 0.89129 0.88545 0.87947 0.95065 0.94868 1.00003 0.92699 0.92482 0.88529 0.88946 0.90702 0.90862 0.89802 0.90739 0.90484 0.86263 0.86468 0.85900 0.81383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 14.32 29.02 0.42 -2.36 16 2 C -0.14 -2.19 9.21 -36.03 -0.33 -2.52 16 3 C 0.09 1.57 5.25 -4.98 -0.03 1.54 16 4 N -0.50 -10.53 3.98 -238.96 -0.95 -11.48 16 5 C 0.16 4.05 3.44 -4.98 -0.02 4.03 16 6 C -0.50 -14.52 8.89 -34.44 -0.31 -14.82 16 7 H 0.08 2.58 7.45 -52.49 -0.39 2.19 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 10 Si 0.87 22.03 27.47 -169.99 -4.67 17.36 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 14 C 0.04 0.58 3.74 -4.97 -0.02 0.57 16 15 C 0.51 9.17 7.11 -10.99 -0.08 9.09 16 16 O -0.47 -10.50 12.29 5.55 0.07 -10.43 16 17 N -0.57 -8.28 2.97 -112.85 -0.34 -8.61 16 18 C 0.10 1.00 6.16 -3.58 -0.02 0.98 16 19 C -0.13 -1.08 6.11 -26.58 -0.16 -1.24 16 20 C -0.07 -0.64 5.78 -28.01 -0.16 -0.80 16 21 C -0.13 -1.58 5.76 -104.45 -0.60 -2.18 16 22 C -0.10 -1.17 9.66 -39.52 -0.38 -1.56 16 23 C -0.15 -1.79 10.03 -39.60 -0.40 -2.19 16 24 C -0.10 -1.44 10.05 -39.63 -0.40 -1.84 16 25 C -0.15 -2.57 8.87 -39.36 -0.35 -2.92 16 26 C 0.17 2.56 6.31 -83.62 -0.53 2.03 16 27 H 0.10 1.52 7.84 -52.49 -0.41 1.11 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.10 1.29 6.86 -52.48 -0.36 0.93 16 30 H 0.10 2.16 6.27 -51.93 -0.33 1.84 16 31 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.03 0.88 6.05 -51.93 -0.31 0.56 16 33 H -0.02 -0.42 7.55 -51.93 -0.39 -0.81 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 36 H 0.10 1.26 5.77 -51.93 -0.30 0.96 16 37 H 0.09 0.75 6.27 -51.93 -0.33 0.42 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 45 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 46 H 0.17 3.39 4.98 -53.59 -0.27 3.12 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -34.42 363.84 -9.98 -44.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.89 Total: 2.65 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -3.46 Total: -12.21 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.51 Total: -47.25 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.42 -9.98 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292185943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.289 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds