Wall clock time and date at job start Tue Mar 31 2020 10:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50708 * 119.99843 * 2 1 4 4 N 1.46901 * 109.47260 * 124.68680 * 3 2 1 5 5 C 1.46906 * 110.99878 * 301.12922 * 4 3 2 6 6 C 1.50699 * 109.47010 * 297.14927 * 5 4 3 7 7 H 1.08004 * 120.00013 * 4.73778 * 6 5 4 8 8 C 1.37881 * 120.00146 * 184.74289 * 6 5 4 9 9 N 1.31518 * 119.99628 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00056 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47103 * 89.99780 * 10 8 6 12 12 H 1.48496 * 109.46742 * 209.99915 * 10 8 6 13 13 H 1.48499 * 109.46872 * 329.99707 * 10 8 6 14 14 C 1.46897 * 111.00082 * 65.07655 * 4 3 2 15 15 C 1.50704 * 109.46567 * 66.04729 * 14 4 3 16 16 O 1.21287 * 120.00185 * 0.02562 * 15 14 4 17 17 N 1.34785 * 119.99660 * 180.27295 * 15 14 4 18 18 C 1.39926 * 119.99800 * 174.86356 * 17 15 14 19 19 C 1.38899 * 120.10725 * 35.27068 * 18 17 15 20 20 C 1.37961 * 119.86157 * 179.97438 * 19 18 17 21 21 C 1.38566 * 120.31322 * 359.97438 * 20 19 18 22 22 C 1.38277 * 119.96005 * 0.02562 * 21 20 19 23 23 C 1.38379 * 119.92177 * 359.74344 * 22 21 20 24 24 C 1.51378 * 109.75379 * 180.02562 * 22 21 20 25 25 C 1.54339 * 105.17131 * 342.79582 * 24 22 21 26 26 C 1.51394 * 130.30663 * 180.02562 * 21 20 19 27 27 H 1.08003 * 120.00010 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00427 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46848 * 4.69035 * 3 2 1 31 31 H 1.08997 * 109.47386 * 244.68596 * 3 2 1 32 32 H 1.08999 * 109.47110 * 57.14931 * 5 4 3 33 33 H 1.08994 * 109.46909 * 177.15031 * 5 4 3 34 34 H 0.96992 * 119.99333 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47355 * 306.05358 * 14 4 3 36 36 H 1.08996 * 109.47478 * 186.04944 * 14 4 3 37 37 H 0.96997 * 120.00288 * 354.86490 * 17 15 14 38 38 H 1.07996 * 120.06468 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.84138 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.92444 * 180.25528 * 23 22 21 41 41 H 1.08998 * 110.30436 * 223.87304 * 24 22 21 42 42 H 1.09001 * 110.38959 * 101.76612 * 24 22 21 43 43 H 1.09007 * 110.82120 * 268.15228 * 25 24 22 44 44 H 1.09001 * 110.99432 * 144.68301 * 25 24 22 45 45 H 1.08999 * 110.30314 * 316.12803 * 26 21 20 46 46 H 1.09001 * 110.30662 * 78.27499 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9909 1.3352 1.1388 5 6 2.2695 1.1825 2.4094 6 6 1.3291 2.3451 2.5960 7 1 1.2162 3.0796 1.8122 8 6 0.6128 2.4714 3.7674 9 7 0.7499 1.5768 4.7217 10 14 -0.5534 3.9123 3.9984 11 1 -1.9036 3.5405 3.5042 12 1 -0.6322 4.2590 5.4402 13 1 -0.0516 5.0826 3.2345 14 6 4.0314 0.3080 0.9976 15 6 4.9052 0.6376 -0.1852 16 8 4.6833 1.6307 -0.8452 17 7 5.9304 -0.1740 -0.5126 18 6 6.6747 0.0719 -1.6716 19 6 6.9189 1.3772 -2.0790 20 6 7.6538 1.6138 -3.2223 21 6 8.1503 0.5554 -3.9662 22 6 7.9089 -0.7451 -3.5632 23 6 7.1762 -0.9871 -2.4145 24 6 8.5526 -1.7100 -4.5359 25 6 8.8357 -0.8767 -5.8038 26 6 8.9722 0.5524 -5.2376 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3580 2.1319 0.0840 31 1 2.6256 1.4002 -0.9289 32 1 1.6999 0.2533 2.3944 33 1 2.9840 1.1574 3.2321 34 1 0.2458 1.6655 5.5455 35 1 3.5636 -0.6644 0.8439 36 1 4.6394 0.2798 1.9019 37 1 6.1521 -0.9285 0.0552 38 1 6.5342 2.2050 -1.5019 39 1 7.8431 2.6289 -3.5390 40 1 6.9912 -2.0028 -2.0974 41 1 7.8694 -2.5277 -4.7655 42 1 9.4833 -2.1001 -4.1240 43 1 8.0011 -0.9382 -6.5022 44 1 9.7626 -1.1947 -6.2812 45 1 8.5757 1.2797 -5.9460 46 1 10.0162 0.7717 -5.0137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292269174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:39 Heat of formation + Delta-G solvation = 1.325971 kcal Electronic energy + Delta-G solvation = -25431.875520 eV Core-core repulsion = 21900.043439 eV Total energy + Delta-G solvation = -3531.832081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73528 -40.50391 -38.63274 -36.94783 -34.83487 -34.79904 -33.71923 -32.16502 -30.40536 -29.14608 -28.37760 -27.60106 -25.98926 -23.67970 -23.25387 -22.33167 -21.66952 -21.02933 -20.48208 -18.51587 -18.15294 -17.89701 -17.15085 -16.78687 -16.57249 -16.35178 -16.06393 -15.89862 -15.66696 -15.13674 -15.01006 -14.52362 -14.28688 -14.17397 -13.92348 -13.67515 -13.61238 -13.21991 -12.98529 -12.81425 -12.74835 -12.67778 -12.45531 -12.31469 -12.22317 -12.05317 -11.98477 -11.93214 -11.63443 -11.38068 -11.01730 -10.72281 -10.57336 -10.12569 -9.68455 -8.97985 -8.90726 -8.18258 -6.24708 0.28637 0.43555 1.39807 1.41136 1.43675 1.52391 1.59275 1.95039 2.42181 2.79942 3.15079 3.41314 3.57417 3.69462 3.74315 4.04853 4.09872 4.16998 4.23383 4.24980 4.36774 4.38441 4.43681 4.47537 4.61966 4.62549 4.77843 4.89839 4.97989 4.98823 5.05605 5.06752 5.11676 5.20926 5.25835 5.34810 5.36033 5.39975 5.43138 5.57659 5.65524 5.70470 5.70803 5.90669 6.04379 6.10250 6.34471 6.38623 6.64516 6.88381 7.17862 7.43044 8.92791 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.002507 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.084039 B =11165.747411 C =11351.854930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.192 4.192 3 C 0.092 3.908 4 N -0.529 5.529 5 C 0.212 3.788 6 C -0.515 4.515 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.958 3.042 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.035 3.965 15 C 0.520 3.480 16 O -0.537 6.537 17 N -0.663 5.663 18 C 0.135 3.865 19 C -0.144 4.144 20 C -0.102 4.102 21 C -0.125 4.125 22 C -0.089 4.089 23 C -0.135 4.135 24 C -0.079 4.079 25 C -0.117 4.117 26 C -0.080 4.080 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.079 0.921 32 H -0.017 1.017 33 H 0.010 0.990 34 H 0.263 0.737 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.426 0.574 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.933 -10.244 -18.619 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.212 4.212 3 C -0.035 4.035 4 N -0.252 5.252 5 C 0.086 3.914 6 C -0.554 4.554 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.197 1.197 14 C -0.096 4.096 15 C 0.308 3.692 16 O -0.412 6.412 17 N -0.311 5.311 18 C 0.041 3.959 19 C -0.164 4.164 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.090 4.090 23 C -0.155 4.155 24 C -0.115 4.115 25 C -0.154 4.154 26 C -0.117 4.117 27 H 0.128 0.872 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.001 0.999 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.265 0.735 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.901 -9.102 -18.841 26.898 hybrid contribution -1.253 -0.102 1.174 1.720 sum 15.649 -9.205 -17.666 25.332 Atomic orbital electron populations 1.23848 0.95980 1.01846 0.99651 1.23552 0.97130 0.99382 1.01086 1.21228 0.94121 0.94433 0.93752 1.62000 1.13699 1.46102 1.03441 1.19392 0.91716 0.95021 0.85223 1.21352 1.23275 1.09496 1.01263 0.92909 1.25715 0.98760 0.98944 0.95535 1.70046 1.43135 1.36756 1.07021 0.85550 0.79192 0.79630 0.77281 1.19839 1.20614 1.19664 1.21996 0.94802 0.95898 0.96917 1.20999 0.80259 0.82380 0.85541 1.90644 1.70549 1.27080 1.52958 1.43364 1.30923 1.32216 1.24557 1.17741 0.95382 0.93763 0.89031 1.21174 1.00013 0.96304 0.98957 1.20675 0.97446 0.99544 0.94346 1.20957 0.99817 0.93290 0.98539 1.20766 0.97028 0.96098 0.95075 1.20520 1.01575 0.98401 0.95043 1.21119 1.00703 0.96683 0.93031 1.22323 1.03288 0.93249 0.96542 1.21105 0.99249 0.98878 0.92495 0.87189 0.89520 0.87048 0.92287 0.90332 0.99943 0.97208 0.92774 0.90200 0.86973 0.73534 0.86708 0.85271 0.83685 0.89781 0.88763 0.90958 0.88363 0.90412 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 14.32 67.79 0.97 -5.29 16 2 C -0.19 -7.11 7.52 25.66 0.19 -6.92 16 3 C 0.09 3.88 5.19 85.56 0.44 4.33 16 4 N -0.53 -23.40 4.47 -909.93 -4.06 -27.46 16 5 C 0.21 11.00 4.48 85.56 0.38 11.39 16 6 C -0.52 -29.35 8.60 25.60 0.22 -29.13 16 7 H 0.05 3.05 6.70 -2.91 -0.02 3.03 16 8 C 0.01 0.49 5.46 84.66 0.46 0.96 16 9 N -0.93 -55.02 13.29 21.45 0.28 -54.74 16 10 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 14 C 0.04 1.18 5.30 85.56 0.45 1.63 16 15 C 0.52 16.90 7.36 87.66 0.65 17.54 16 16 O -0.54 -21.70 11.79 -3.05 -0.04 -21.73 16 17 N -0.66 -16.18 5.34 -303.57 -1.62 -17.80 16 18 C 0.13 3.49 6.29 38.13 0.24 3.73 16 19 C -0.14 -4.23 8.70 22.36 0.19 -4.03 16 20 C -0.10 -2.50 10.03 22.28 0.22 -2.27 16 21 C -0.13 -2.55 6.14 -19.56 -0.12 -2.67 16 22 C -0.09 -1.69 6.13 -19.61 -0.12 -1.81 16 23 C -0.14 -2.78 9.96 22.42 0.22 -2.55 16 24 C -0.08 -0.93 6.77 30.52 0.21 -0.72 16 25 C -0.12 -1.16 7.08 31.49 0.22 -0.94 16 26 C -0.08 -1.08 6.77 30.51 0.21 -0.87 16 27 H 0.11 3.33 8.06 -2.91 -0.02 3.30 16 28 H 0.09 3.27 7.84 -2.91 -0.02 3.24 16 29 H 0.11 3.64 6.81 -2.91 -0.02 3.62 16 30 H 0.06 2.75 6.24 -2.38 -0.01 2.74 16 31 H 0.08 3.29 5.81 -2.39 -0.01 3.28 16 32 H -0.02 -0.92 6.95 -2.39 -0.02 -0.94 16 33 H 0.01 0.55 8.00 -2.39 -0.02 0.53 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.08 2.36 6.38 -2.39 -0.02 2.34 16 36 H 0.11 3.46 7.97 -2.39 -0.02 3.44 16 37 H 0.43 7.08 8.82 -92.71 -0.82 6.26 16 38 H 0.11 3.98 6.24 -2.91 -0.02 3.96 16 39 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.28 370.93 1.81 -69.47 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.17 Total: 22.86 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 5.05 Total: -17.63 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -5.40 Total: -100.00 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.28 1.81 -69.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292269174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.800 kcal (2) G-P(sol) polarization free energy of solvation -71.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds