Wall clock time and date at job start Tue Mar 31 2020 11:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.26065 * 2 1 4 4 C 1.53739 * 110.29561 * 237.84282 * 2 1 3 5 5 C 1.51224 * 104.58420 * 241.04839 * 4 2 1 6 6 C 1.38186 * 130.96760 * 179.97438 * 5 4 2 7 7 C 1.38223 * 120.14698 * 180.02562 * 6 5 4 8 8 C 1.38294 * 119.82733 * 0.02562 * 7 6 5 9 9 C 1.37842 * 120.22239 * 359.97438 * 8 7 6 10 10 C 1.38546 * 108.55808 * 0.02562 * 5 4 2 11 11 N 1.39849 * 111.62053 * 359.97216 * 10 5 4 12 12 C 1.34780 * 124.98421 * 179.97438 * 11 10 5 13 13 O 1.21589 * 119.99672 * 354.57921 * 12 11 10 14 14 N 1.34772 * 120.00170 * 174.58151 * 12 11 10 15 15 C 1.46504 * 120.00037 * 184.89427 * 14 12 11 16 16 H 1.09004 * 110.01366 * 325.69807 * 15 14 12 17 17 C 1.54265 * 110.03176 * 87.08780 * 15 14 12 18 18 C 1.55012 * 104.13610 * 95.69089 * 17 15 14 19 19 C 1.54895 * 102.75771 * 37.94571 * 18 17 15 20 20 H 1.09003 * 110.48200 * 80.72582 * 19 18 17 21 21 C 1.50695 * 110.60324 * 203.31356 * 19 18 17 22 22 H 1.07993 * 119.99818 * 114.83956 * 21 19 18 23 23 C 1.37876 * 120.00167 * 294.84848 * 21 19 18 24 24 N 1.31510 * 120.00023 * 180.02562 * 23 21 19 25 25 Si 1.86801 * 119.99928 * 359.97438 * 23 21 19 26 26 H 1.48502 * 109.47059 * 90.00591 * 25 23 21 27 27 H 1.48501 * 109.47166 * 210.00494 * 25 23 21 28 28 H 1.48501 * 109.47219 * 330.00324 * 25 23 21 29 29 C 1.53870 * 110.03577 * 204.30831 * 15 14 12 30 30 H 1.09001 * 109.47005 * 297.92841 * 1 2 3 31 31 H 1.08995 * 109.47699 * 57.93662 * 1 2 3 32 32 H 1.09002 * 109.46706 * 177.93780 * 1 2 3 33 33 H 1.08997 * 110.42057 * 359.83953 * 4 2 1 34 34 H 1.09007 * 110.41605 * 122.28909 * 4 2 1 35 35 H 1.07993 * 119.92857 * 0.32754 * 6 5 4 36 36 H 1.08003 * 120.08747 * 179.97438 * 7 6 5 37 37 H 1.08005 * 119.88760 * 179.97438 * 8 7 6 38 38 H 1.08000 * 119.85693 * 180.02562 * 9 8 7 39 39 H 0.96994 * 120.00411 * 4.89116 * 14 12 11 40 40 H 1.08998 * 110.48719 * 214.35211 * 17 15 14 41 41 H 1.08994 * 110.49021 * 337.00049 * 17 15 14 42 42 H 1.09002 * 110.75882 * 279.63210 * 18 17 15 43 43 H 1.08998 * 110.90491 * 156.33673 * 18 17 15 44 44 H 0.97005 * 120.00280 * 179.97438 * 24 23 21 45 45 H 1.09010 * 110.03148 * 0.02562 * 29 15 14 46 46 H 1.09006 * 110.03378 * 121.42599 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9074 1.0225 0.0000 4 6 2.0632 -0.7675 -1.2207 5 6 2.8598 -1.9109 -0.6335 6 6 3.5676 -2.9292 -1.2431 7 6 4.2249 -3.8732 -0.4768 8 6 4.1723 -3.7968 0.9031 9 6 3.4675 -2.7828 1.5155 10 6 2.8008 -1.8256 0.7481 11 7 2.0385 -0.7296 1.1646 12 6 1.8048 -0.3941 2.4489 13 8 2.1881 -1.1197 3.3461 14 7 1.1464 0.7455 2.7386 15 6 0.9861 1.1646 4.1333 16 1 0.8736 0.2906 4.7749 17 6 2.2078 1.9941 4.5795 18 6 1.7640 3.4645 4.3700 19 6 0.2748 3.4362 4.7949 20 1 0.1869 3.4840 5.8803 21 6 -0.4808 4.5724 4.1554 22 1 -1.2616 4.3658 3.4384 23 6 -0.1752 5.8758 4.4854 24 7 -0.8350 6.8673 3.9276 25 14 1.1749 6.2331 5.7258 26 1 2.4735 6.3698 5.0184 27 1 0.8666 7.4965 6.4429 28 1 1.2581 5.1174 6.7022 29 6 -0.2425 2.0808 4.2705 30 1 -0.3633 0.4813 0.9080 31 1 -0.3634 0.5455 -0.8708 32 1 -0.3633 -1.0270 -0.0370 33 1 1.2371 -1.1483 -1.8211 34 1 2.7070 -0.1254 -1.8221 35 1 3.6113 -2.9848 -2.3207 36 1 4.7775 -4.6689 -0.9543 37 1 4.6852 -4.5342 1.5028 38 1 3.4306 -2.7286 2.5935 39 1 0.7786 1.2883 2.0239 40 1 2.4315 1.8089 5.6301 41 1 3.0730 1.7638 3.9579 42 1 1.8615 3.7520 3.3231 43 1 2.3353 4.1380 5.0088 44 1 -0.6203 7.7843 4.1601 45 1 -0.7198 2.2133 3.2995 46 1 -0.9508 1.6519 4.9794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298254173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:32 Heat of formation + Delta-G solvation = -18.868284 kcal Electronic energy + Delta-G solvation = -26490.381267 eV Core-core repulsion = 22957.673497 eV Total energy + Delta-G solvation = -3532.707770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42570 -40.44240 -38.86212 -37.70505 -35.33606 -34.06321 -33.45171 -31.87650 -30.84806 -30.12661 -29.01755 -27.43047 -25.64566 -24.42018 -22.96015 -22.38108 -21.79764 -21.11166 -20.77898 -19.06046 -18.94014 -17.84437 -17.06502 -16.87585 -16.74306 -16.53561 -15.96833 -15.76435 -15.53660 -15.07415 -14.82337 -14.66465 -14.39604 -14.09608 -14.07285 -13.75951 -13.41703 -13.36420 -13.18460 -12.94225 -12.83281 -12.64405 -12.55049 -12.36158 -12.11321 -11.94623 -11.83523 -11.66583 -11.54684 -11.33473 -11.24350 -11.20601 -11.01927 -10.68578 -10.15711 -9.70544 -8.72585 -8.27301 -6.29384 0.38594 0.46449 1.33608 1.37411 1.37787 1.46910 1.96174 2.35393 2.72201 2.89283 3.08298 3.46823 3.57237 3.77602 3.82651 3.94618 4.08569 4.11954 4.14100 4.27277 4.34830 4.48618 4.55948 4.58676 4.59839 4.68322 4.71821 4.74658 4.86556 4.91264 4.93242 4.95162 4.97809 5.06474 5.12527 5.17543 5.19389 5.28382 5.41831 5.51486 5.53123 5.59015 5.64361 5.67191 5.77603 5.97205 6.15451 6.33567 6.75020 6.77112 7.33419 7.36091 8.88947 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.003224 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.121960 B = 8682.769441 C = 9211.808325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 H 0.096 0.904 4 C -0.071 4.071 5 C -0.146 4.146 6 C -0.077 4.077 7 C -0.144 4.144 8 C -0.099 4.099 9 C -0.164 4.164 10 C 0.136 3.864 11 N -0.569 5.569 12 C 0.710 3.290 13 O -0.611 6.611 14 N -0.717 5.717 15 C 0.164 3.836 16 H 0.084 0.916 17 C -0.124 4.124 18 C -0.123 4.123 19 C 0.006 3.994 20 H 0.033 0.967 21 C -0.506 4.506 22 H 0.040 0.960 23 C 0.015 3.985 24 N -0.950 5.950 25 Si 0.935 3.065 26 H -0.269 1.269 27 H -0.298 1.298 28 H -0.246 1.246 29 C -0.103 4.103 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.406 0.594 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.264 0.736 45 H 0.066 0.934 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.731 -19.658 -12.853 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 H 0.114 0.886 4 C -0.107 4.107 5 C -0.149 4.149 6 C -0.095 4.095 7 C -0.163 4.163 8 C -0.118 4.118 9 C -0.186 4.186 10 C 0.041 3.959 11 N -0.294 5.294 12 C 0.413 3.587 13 O -0.491 6.491 14 N -0.373 5.373 15 C 0.059 3.941 16 H 0.102 0.898 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.013 4.013 20 H 0.051 0.949 21 C -0.544 4.544 22 H 0.059 0.941 23 C -0.182 4.182 24 N -0.590 5.590 25 Si 0.762 3.238 26 H -0.195 1.195 27 H -0.225 1.225 28 H -0.169 1.169 29 C -0.141 4.141 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.128 0.872 39 H 0.244 0.756 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.890 -19.851 -12.066 24.873 hybrid contribution 0.089 1.170 0.714 1.373 sum 8.979 -18.681 -11.352 23.632 Atomic orbital electron populations 1.22320 0.92846 1.03252 1.03951 1.22057 0.95875 0.96971 0.83938 0.88611 1.21213 1.00000 0.93772 0.95754 1.20340 1.03213 0.99901 0.91467 1.20757 0.95175 0.92281 1.01310 1.21382 1.01331 1.00474 0.93110 1.21164 0.97690 0.96949 0.95970 1.20984 1.01197 0.96233 1.00137 1.18523 0.94283 0.88915 0.94205 1.45265 1.51115 1.28053 1.04952 1.15805 0.79175 0.81995 0.81723 1.90841 1.58630 1.53619 1.46030 1.45536 1.58813 1.23200 1.09757 1.21493 0.95238 0.96744 0.80663 0.89838 1.22742 0.97059 0.94965 1.01495 1.22800 0.97672 0.95151 1.00436 1.19961 0.92166 0.92998 0.96157 0.94880 1.21320 1.18380 0.90593 1.24107 0.94135 1.25774 0.98403 0.96275 0.97738 1.70035 1.43620 0.99711 1.45680 0.85997 0.79907 0.77509 0.80417 1.19482 1.22547 1.16933 1.22292 0.95746 0.94276 1.01764 0.93029 0.87576 0.92017 0.86814 0.87067 0.82591 0.82711 0.84099 0.87248 0.75581 0.90335 0.92344 0.92514 0.93851 0.92726 0.91587 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.95 71.98 0.64 -2.20 16 2 C 0.11 2.17 3.21 45.23 0.15 2.32 16 3 H 0.10 1.74 8.12 -2.39 -0.02 1.72 16 4 C -0.07 -1.00 6.58 30.26 0.20 -0.80 16 5 C -0.15 -2.87 6.23 -19.64 -0.12 -2.99 16 6 C -0.08 -1.18 10.04 22.25 0.22 -0.95 16 7 C -0.14 -2.25 10.06 22.28 0.22 -2.02 16 8 C -0.10 -2.03 10.02 22.19 0.22 -1.81 16 9 C -0.16 -4.60 9.46 22.51 0.21 -4.39 16 10 C 0.14 3.69 6.62 38.27 0.25 3.94 16 11 N -0.57 -15.61 2.89 -623.86 -1.80 -17.41 16 12 C 0.71 23.54 8.15 179.06 1.46 25.00 16 13 O -0.61 -24.23 14.17 -4.00 -0.06 -24.29 16 14 N -0.72 -22.00 4.57 -454.35 -2.08 -24.08 16 15 C 0.16 5.44 3.27 45.71 0.15 5.59 16 16 H 0.08 2.84 7.52 -2.38 -0.02 2.82 16 17 C -0.12 -4.25 6.54 31.71 0.21 -4.04 16 18 C -0.12 -4.90 5.31 31.93 0.17 -4.73 16 19 C 0.01 0.27 2.27 -10.47 -0.02 0.25 16 20 H 0.03 1.47 7.06 -2.39 -0.02 1.45 16 21 C -0.51 -27.29 9.05 25.60 0.23 -27.06 16 22 H 0.04 2.39 7.79 -2.91 -0.02 2.37 16 23 C 0.02 0.85 5.46 84.66 0.46 1.31 16 24 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 25 Si 0.94 43.82 24.65 68.60 1.69 45.51 16 26 H -0.27 -12.15 7.10 99.48 0.71 -11.45 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.25 -10.69 6.47 99.48 0.64 -10.04 16 29 C -0.10 -3.71 6.12 31.32 0.19 -3.52 16 30 H 0.05 1.06 5.94 -2.39 -0.01 1.05 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.14 7.70 -2.39 -0.02 1.12 16 34 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.11 3.66 6.30 -2.91 -0.02 3.64 16 39 H 0.41 11.25 5.55 -92.71 -0.51 10.74 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.06 1.99 8.04 -2.39 -0.02 1.97 16 42 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 43 H 0.04 1.75 5.27 -2.39 -0.01 1.74 16 44 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 45 H 0.07 2.41 7.13 -2.38 -0.02 2.39 16 46 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -71.07 355.94 3.32 -67.75 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.41 Total: 26.25 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.85 Total: -16.11 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -3.58 Total: -99.12 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.06 Total: -24.29 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.69 Total: 45.51 kcal Total: -71.07 3.32 -67.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298254173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.884 kcal (2) G-P(sol) polarization free energy of solvation -71.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds