Wall clock time and date at job start Tue Mar 31 2020 11:58:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09003 * 109.83704 * 2 1
4 4 C 1.53426 * 109.79887 * 239.15886 * 2 1 3
5 5 C 1.52856 * 108.84732 * 177.16239 * 4 2 1
6 6 C 1.50599 * 110.49810 * 51.40857 * 5 4 2
7 7 C 1.38512 * 118.92997 * 159.46239 * 6 5 4
8 8 C 1.38121 * 120.30186 * 179.85659 * 7 6 5
9 9 C 1.38306 * 120.15650 * 359.97438 * 8 7 6
10 10 C 1.38030 * 119.90253 * 0.06364 * 9 8 7
11 11 C 1.38685 * 121.52844 * 339.14942 * 6 5 4
12 12 N 1.40178 * 120.74213 * 0.81750 * 11 6 5
13 13 C 1.34772 * 120.55341 * 166.42660 * 12 11 6
14 14 O 1.21290 * 120.00372 * 171.80970 * 13 12 11
15 15 C 1.50703 * 120.00051 * 351.80019 * 13 12 11
16 16 N 1.46500 * 109.47523 * 205.45935 * 15 13 12
17 17 C 1.36935 * 120.00623 * 270.00928 * 16 15 13
18 18 H 1.07996 * 119.99847 * 198.83891 * 17 16 15
19 19 C 1.38808 * 119.99757 * 18.83267 * 17 16 15
20 20 N 1.31615 * 120.00570 * 5.85940 * 19 17 16
21 21 Si 1.86803 * 119.99855 * 185.85817 * 19 17 16
22 22 H 1.48499 * 109.47157 * 0.02562 * 21 19 17
23 23 H 1.48501 * 109.47300 * 120.00024 * 21 19 17
24 24 H 1.48495 * 109.47123 * 239.99949 * 21 19 17
25 25 C 1.46503 * 119.99438 * 90.00025 * 16 15 13
26 26 C 1.53004 * 117.49698 * 184.84529 * 25 16 15
27 27 C 1.53000 * 60.00185 * 252.51191 * 26 25 16
28 28 H 1.08993 * 109.47547 * 314.36024 * 1 2 3
29 29 H 1.09005 * 109.47158 * 74.36612 * 1 2 3
30 30 H 1.09001 * 109.47172 * 194.35763 * 1 2 3
31 31 H 1.08993 * 109.57738 * 296.97461 * 4 2 1
32 32 H 1.09005 * 109.57142 * 57.23303 * 4 2 1
33 33 H 1.08996 * 109.27296 * 171.67391 * 5 4 2
34 34 H 1.09008 * 109.27171 * 291.18445 * 5 4 2
35 35 H 1.07995 * 119.84965 * 359.88828 * 7 6 5
36 36 H 1.07998 * 119.92071 * 179.97438 * 8 7 6
37 37 H 1.08001 * 120.04571 * 180.02562 * 9 8 7
38 38 H 1.08003 * 119.98241 * 179.97438 * 10 9 8
39 39 H 1.08998 * 109.47786 * 325.46708 * 15 13 12
40 40 H 1.09009 * 109.46705 * 85.46890 * 15 13 12
41 41 H 0.97001 * 120.00891 * 185.00791 * 20 19 17
42 42 H 1.09002 * 115.55404 * 330.55579 * 25 16 15
43 43 H 1.08997 * 117.50157 * 0.02562 * 26 25 16
44 44 H 1.09000 * 117.49460 * 145.02863 * 26 25 16
45 45 H 1.08994 * 117.50267 * 252.51348 * 27 26 25
46 46 H 1.09008 * 117.49615 * 107.48389 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8999 1.0253 0.0000
4 6 2.0497 -0.7401 -1.2394
5 6 3.5764 -0.6659 -1.2549
6 6 4.1395 -1.1132 0.0683
7 6 5.4598 -1.5275 0.1289
8 6 6.0062 -1.9408 1.3283
9 6 5.2373 -1.9430 2.4779
10 6 3.9205 -1.5324 2.4259
11 6 3.3694 -1.1127 1.2216
12 7 2.0276 -0.7085 1.1871
13 6 1.2091 -0.9605 2.2278
14 8 0.0958 -0.4800 2.2541
15 6 1.6772 -1.8397 3.3588
16 7 0.5182 -2.4507 4.0142
17 6 -0.0892 -1.8148 5.0639
18 1 -0.7266 -2.3701 5.7359
19 6 0.1146 -0.4564 5.2641
20 7 0.7962 0.2439 4.3825
21 14 -0.5786 0.3778 6.7850
22 1 -1.2991 -0.6224 7.6131
23 1 0.5315 0.9671 7.5759
24 1 -1.5189 1.4516 6.3754
25 6 0.0089 -3.7423 3.5464
26 6 -1.2705 -4.2742 4.1955
27 6 0.0774 -4.9225 4.5178
28 1 -0.3634 0.7184 0.7347
29 1 -0.3634 0.2770 -0.9897
30 1 -0.3633 -0.9956 0.2548
31 1 1.7351 -1.7829 -1.2008
32 1 1.6504 -0.2712 -2.1388
33 1 3.9599 -1.3106 -2.0456
34 1 3.8847 0.3618 -1.4475
35 1 6.0650 -1.5269 -0.7656
36 1 7.0362 -2.2630 1.3684
37 1 5.6665 -2.2661 3.4148
38 1 3.3188 -1.5340 3.3227
39 1 2.3269 -2.6219 2.9662
40 1 2.2283 -1.2385 4.0821
41 1 1.0011 1.1758 4.5570
42 1 0.1613 -3.9523 2.4877
43 1 -1.7334 -3.6631 4.9703
44 1 -1.9600 -4.8343 3.5638
45 1 0.2747 -5.9089 4.0981
46 1 0.5015 -4.7378 5.5048
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299509326.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:58:56
Heat of formation + Delta-G solvation = 106.722774 kcal
Electronic energy + Delta-G solvation = -27988.544284 eV
Core-core repulsion = 24461.282551 eV
Total energy + Delta-G solvation = -3527.261733 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.62775 -38.01642 -37.07319 -35.76842 -33.71887 -33.30664 -31.43355 -30.46761
-29.43403 -27.54735 -26.92862 -24.25507 -23.73613 -22.00544 -21.85048 -21.45733
-20.31413 -19.87910 -18.55105 -17.11991 -16.62948 -15.87660 -15.71533 -15.16226
-14.77028 -14.39212 -14.24353 -13.86760 -13.78854 -13.68688 -13.11244 -12.94855
-12.79708 -12.57712 -12.20894 -11.96762 -11.89218 -11.58051 -11.46307 -11.09741
-10.99390 -10.91028 -10.82020 -10.77018 -10.58498 -10.46937 -10.37461 -10.03665
-9.86455 -9.71928 -9.42042 -9.28922 -8.50546 -8.33849 -8.19111 -7.17219
-6.65227 -5.78188 -3.21581 1.71418 1.82562 3.37029 3.44619 3.46784
3.59865 3.94790 4.27413 4.49124 4.83058 4.86522 4.99322 5.09607
5.14097 5.24271 5.42201 5.46217 5.48772 5.55403 5.70877 5.74156
5.79129 5.87471 5.92150 5.96245 5.98987 6.03435 6.11973 6.15387
6.21646 6.28032 6.39515 6.40351 6.49355 6.54496 6.59545 6.67374
6.81562 6.86707 6.92337 6.97000 6.99906 7.02213 7.27776 7.53656
7.75356 8.19892 8.41240 9.13189 9.53912 9.80238 10.19945 11.26749
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013184 B = 0.005396 C = 0.005196
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2123.297481 B = 5187.400408 C = 5387.663316
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.139 3.861
3 H 0.065 0.935
4 C -0.130 4.130
5 C -0.071 4.071
6 C -0.141 4.141
7 C -0.094 4.094
8 C -0.165 4.165
9 C -0.091 4.091
10 C -0.204 4.204
11 C 0.195 3.805
12 N -0.570 5.570
13 C 0.513 3.487
14 O -0.454 6.454
15 C 0.166 3.834
16 N -0.548 5.548
17 C -0.257 4.257
18 H 0.078 0.922
19 C 0.009 3.991
20 N -0.897 5.897
21 Si 0.912 3.088
22 H -0.280 1.280
23 H -0.291 1.291
24 H -0.291 1.291
25 C 0.124 3.876
26 C -0.195 4.195
27 C -0.222 4.222
28 H 0.082 0.918
29 H 0.038 0.962
30 H 0.060 0.940
31 H 0.068 0.932
32 H 0.074 0.926
33 H 0.072 0.928
34 H 0.069 0.931
35 H 0.115 0.885
36 H 0.113 0.887
37 H 0.120 0.880
38 H 0.177 0.823
39 H 0.049 0.951
40 H 0.125 0.875
41 H 0.251 0.749
42 H 0.084 0.916
43 H 0.099 0.901
44 H 0.076 0.924
45 H 0.075 0.925
46 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.874 -3.897 -9.587 13.004
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.036 3.964
3 H 0.083 0.917
4 C -0.168 4.168
5 C -0.108 4.108
6 C -0.144 4.144
7 C -0.113 4.113
8 C -0.185 4.185
9 C -0.109 4.109
10 C -0.224 4.224
11 C 0.097 3.903
12 N -0.298 5.298
13 C 0.300 3.700
14 O -0.320 6.320
15 C 0.038 3.962
16 N -0.265 5.265
17 C -0.385 4.385
18 H 0.096 0.904
19 C -0.189 4.189
20 N -0.542 5.542
21 Si 0.742 3.258
22 H -0.205 1.205
23 H -0.218 1.218
24 H -0.218 1.218
25 C 0.014 3.986
26 C -0.233 4.233
27 C -0.263 4.263
28 H 0.101 0.899
29 H 0.057 0.943
30 H 0.079 0.921
31 H 0.087 0.913
32 H 0.093 0.907
33 H 0.090 0.910
34 H 0.088 0.912
35 H 0.133 0.867
36 H 0.131 0.869
37 H 0.138 0.862
38 H 0.193 0.807
39 H 0.067 0.933
40 H 0.141 0.859
41 H 0.062 0.938
42 H 0.102 0.898
43 H 0.117 0.883
44 H 0.094 0.906
45 H 0.094 0.906
46 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 7.000 -3.356 -9.521 12.285
hybrid contribution -0.240 0.683 0.622 0.954
sum 6.760 -2.673 -8.899 11.491
Atomic orbital electron populations
1.22070 0.92652 1.04369 1.00100 1.21270 0.95845 0.94969 0.84364
0.91737 1.21951 0.95375 1.01575 0.97930 1.20319 0.95148 1.01120
0.94214 1.19391 0.94725 1.06569 0.93753 1.20744 0.93804 0.99081
0.97685 1.20881 0.99709 1.04687 0.93185 1.20958 0.93411 0.98552
0.98009 1.22794 0.96924 1.03067 0.99620 1.17696 0.84382 0.94993
0.93236 1.46848 1.08211 1.56426 1.18273 1.22328 0.85504 0.81282
0.80880 1.90573 1.20814 1.46536 1.74105 1.21667 0.88594 0.93291
0.92624 1.43607 1.31235 1.17106 1.34536 1.19225 1.26284 0.90619
1.02395 0.90403 1.24882 1.00358 0.95695 0.97966 1.70003 1.43222
1.08335 1.32640 0.86080 0.78360 0.79387 0.81954 1.20501 1.21783
1.21787 1.20962 0.97917 0.86491 0.93194 1.23080 0.91064 1.04275
1.04880 1.23433 1.01905 0.97944 1.03022 0.89884 0.94309 0.92101
0.91350 0.90718 0.90985 0.91238 0.86731 0.86894 0.86194 0.80652
0.93302 0.85867 0.93811 0.89834 0.88286 0.90552 0.90634 0.89307
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.43 7.73 37.16 0.29 -2.14 16
2 C 0.14 2.37 3.42 -67.48 -0.23 2.14 16
3 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
4 C -0.13 -1.75 5.38 -26.58 -0.14 -1.90 16
5 C -0.07 -0.89 5.78 -28.01 -0.16 -1.05 16
6 C -0.14 -2.13 5.76 -104.41 -0.60 -2.73 16
7 C -0.09 -1.26 9.66 -39.52 -0.38 -1.64 16
8 C -0.17 -2.19 10.04 -39.60 -0.40 -2.58 16
9 C -0.09 -1.33 10.05 -39.63 -0.40 -1.73 16
10 C -0.20 -3.58 7.59 -39.40 -0.30 -3.88 16
11 C 0.19 3.48 6.23 -83.62 -0.52 2.96 16
12 N -0.57 -11.21 2.97 -105.82 -0.31 -11.52 16
13 C 0.51 11.83 5.86 -10.99 -0.06 11.77 16
14 O -0.45 -11.97 10.43 5.55 0.06 -11.91 16
15 C 0.17 3.77 3.18 -5.19 -0.02 3.76 16
16 N -0.55 -13.26 2.56 -191.77 -0.49 -13.75 16
17 C -0.26 -6.77 8.96 -15.06 -0.13 -6.91 16
18 H 0.08 2.05 6.05 -52.49 -0.32 1.73 16
19 C 0.01 0.25 5.12 -17.43 -0.09 0.16 16
20 N -0.90 -24.71 7.20 55.49 0.40 -24.31 16
21 Si 0.91 21.88 29.56 -169.99 -5.03 16.85 16
22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
25 C 0.12 2.62 6.57 -67.92 -0.45 2.17 16
26 C -0.19 -3.78 9.77 -26.73 -0.26 -4.05 16
27 C -0.22 -4.09 10.33 -26.73 -0.28 -4.36 16
28 H 0.08 1.76 6.70 -51.93 -0.35 1.41 16
29 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16
30 H 0.06 1.22 7.00 -51.93 -0.36 0.86 16
31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
33 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16
34 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16
35 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16
36 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16
37 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16
38 H 0.18 3.39 2.86 -82.81 -0.24 3.15 16
39 H 0.05 1.01 5.70 -51.93 -0.30 0.72 16
40 H 0.12 3.02 4.96 -51.92 -0.26 2.76 16
41 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16
42 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16
43 H 0.10 2.10 6.24 -51.93 -0.32 1.78 16
44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
46 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16
LS Contribution 348.79 15.07 5.26 5.26
Total: -1.00 -29.53 348.79 -11.02 -40.56
By element:
Atomic # 1 Polarization: 15.61 SS G_CDS: -6.77 Total: 8.84 kcal
Atomic # 6 Polarization: -5.87 SS G_CDS: -4.14 Total: -10.01 kcal
Atomic # 7 Polarization: -49.18 SS G_CDS: -0.40 Total: -49.59 kcal
Atomic # 8 Polarization: -11.97 SS G_CDS: 0.06 Total: -11.91 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -29.53 -11.02 -40.56 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299509326.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 147.279 kcal
(2) G-P(sol) polarization free energy of solvation -29.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) 106.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds