Wall clock time and date at job start Tue Mar 31 2020 11:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.83704 * 2 1 4 4 C 1.53426 * 109.79887 * 239.15886 * 2 1 3 5 5 C 1.52856 * 108.84732 * 177.16239 * 4 2 1 6 6 C 1.50599 * 110.49810 * 51.40857 * 5 4 2 7 7 C 1.38512 * 118.92997 * 159.46239 * 6 5 4 8 8 C 1.38121 * 120.30186 * 179.85659 * 7 6 5 9 9 C 1.38306 * 120.15650 * 359.97438 * 8 7 6 10 10 C 1.38030 * 119.90253 * 0.06364 * 9 8 7 11 11 C 1.38685 * 121.52844 * 339.14942 * 6 5 4 12 12 N 1.40178 * 120.74213 * 0.81750 * 11 6 5 13 13 C 1.34772 * 120.55341 * 166.42660 * 12 11 6 14 14 O 1.21290 * 120.00372 * 171.80970 * 13 12 11 15 15 C 1.50703 * 120.00051 * 351.80019 * 13 12 11 16 16 N 1.46500 * 109.47523 * 205.45935 * 15 13 12 17 17 C 1.36935 * 120.00623 * 270.00928 * 16 15 13 18 18 H 1.07996 * 119.99847 * 198.83891 * 17 16 15 19 19 C 1.38808 * 119.99757 * 18.83267 * 17 16 15 20 20 N 1.31615 * 120.00570 * 5.85940 * 19 17 16 21 21 Si 1.86803 * 119.99855 * 185.85817 * 19 17 16 22 22 H 1.48499 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47300 * 120.00024 * 21 19 17 24 24 H 1.48495 * 109.47123 * 239.99949 * 21 19 17 25 25 C 1.46503 * 119.99438 * 90.00025 * 16 15 13 26 26 C 1.53004 * 117.49698 * 184.84529 * 25 16 15 27 27 C 1.53000 * 60.00185 * 252.51191 * 26 25 16 28 28 H 1.08993 * 109.47547 * 314.36024 * 1 2 3 29 29 H 1.09005 * 109.47158 * 74.36612 * 1 2 3 30 30 H 1.09001 * 109.47172 * 194.35763 * 1 2 3 31 31 H 1.08993 * 109.57738 * 296.97461 * 4 2 1 32 32 H 1.09005 * 109.57142 * 57.23303 * 4 2 1 33 33 H 1.08996 * 109.27296 * 171.67391 * 5 4 2 34 34 H 1.09008 * 109.27171 * 291.18445 * 5 4 2 35 35 H 1.07995 * 119.84965 * 359.88828 * 7 6 5 36 36 H 1.07998 * 119.92071 * 179.97438 * 8 7 6 37 37 H 1.08001 * 120.04571 * 180.02562 * 9 8 7 38 38 H 1.08003 * 119.98241 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.47786 * 325.46708 * 15 13 12 40 40 H 1.09009 * 109.46705 * 85.46890 * 15 13 12 41 41 H 0.97001 * 120.00891 * 185.00791 * 20 19 17 42 42 H 1.09002 * 115.55404 * 330.55579 * 25 16 15 43 43 H 1.08997 * 117.50157 * 0.02562 * 26 25 16 44 44 H 1.09000 * 117.49460 * 145.02863 * 26 25 16 45 45 H 1.08994 * 117.50267 * 252.51348 * 27 26 25 46 46 H 1.09008 * 117.49615 * 107.48389 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8999 1.0253 0.0000 4 6 2.0497 -0.7401 -1.2394 5 6 3.5764 -0.6659 -1.2549 6 6 4.1395 -1.1132 0.0683 7 6 5.4598 -1.5275 0.1289 8 6 6.0062 -1.9408 1.3283 9 6 5.2373 -1.9430 2.4779 10 6 3.9205 -1.5324 2.4259 11 6 3.3694 -1.1127 1.2216 12 7 2.0276 -0.7085 1.1871 13 6 1.2091 -0.9605 2.2278 14 8 0.0958 -0.4800 2.2541 15 6 1.6772 -1.8397 3.3588 16 7 0.5182 -2.4507 4.0142 17 6 -0.0892 -1.8148 5.0639 18 1 -0.7266 -2.3701 5.7359 19 6 0.1146 -0.4564 5.2641 20 7 0.7962 0.2439 4.3825 21 14 -0.5786 0.3778 6.7850 22 1 -1.2991 -0.6224 7.6131 23 1 0.5315 0.9671 7.5759 24 1 -1.5189 1.4516 6.3754 25 6 0.0089 -3.7423 3.5464 26 6 -1.2705 -4.2742 4.1955 27 6 0.0774 -4.9225 4.5178 28 1 -0.3634 0.7184 0.7347 29 1 -0.3634 0.2770 -0.9897 30 1 -0.3633 -0.9956 0.2548 31 1 1.7351 -1.7829 -1.2008 32 1 1.6504 -0.2712 -2.1388 33 1 3.9599 -1.3106 -2.0456 34 1 3.8847 0.3618 -1.4475 35 1 6.0650 -1.5269 -0.7656 36 1 7.0362 -2.2630 1.3684 37 1 5.6665 -2.2661 3.4148 38 1 3.3188 -1.5340 3.3227 39 1 2.3269 -2.6219 2.9662 40 1 2.2283 -1.2385 4.0821 41 1 1.0011 1.1758 4.5570 42 1 0.1613 -3.9523 2.4877 43 1 -1.7334 -3.6631 4.9703 44 1 -1.9600 -4.8343 3.5638 45 1 0.2747 -5.9089 4.0981 46 1 0.5015 -4.7378 5.5048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299509326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:56 Heat of formation + Delta-G solvation = 106.722774 kcal Electronic energy + Delta-G solvation = -27988.544284 eV Core-core repulsion = 24461.282551 eV Total energy + Delta-G solvation = -3527.261733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62775 -38.01642 -37.07319 -35.76842 -33.71887 -33.30664 -31.43355 -30.46761 -29.43403 -27.54735 -26.92862 -24.25507 -23.73613 -22.00544 -21.85048 -21.45733 -20.31413 -19.87910 -18.55105 -17.11991 -16.62948 -15.87660 -15.71533 -15.16226 -14.77028 -14.39212 -14.24353 -13.86760 -13.78854 -13.68688 -13.11244 -12.94855 -12.79708 -12.57712 -12.20894 -11.96762 -11.89218 -11.58051 -11.46307 -11.09741 -10.99390 -10.91028 -10.82020 -10.77018 -10.58498 -10.46937 -10.37461 -10.03665 -9.86455 -9.71928 -9.42042 -9.28922 -8.50546 -8.33849 -8.19111 -7.17219 -6.65227 -5.78188 -3.21581 1.71418 1.82562 3.37029 3.44619 3.46784 3.59865 3.94790 4.27413 4.49124 4.83058 4.86522 4.99322 5.09607 5.14097 5.24271 5.42201 5.46217 5.48772 5.55403 5.70877 5.74156 5.79129 5.87471 5.92150 5.96245 5.98987 6.03435 6.11973 6.15387 6.21646 6.28032 6.39515 6.40351 6.49355 6.54496 6.59545 6.67374 6.81562 6.86707 6.92337 6.97000 6.99906 7.02213 7.27776 7.53656 7.75356 8.19892 8.41240 9.13189 9.53912 9.80238 10.19945 11.26749 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.005396 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.297481 B = 5187.400408 C = 5387.663316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.139 3.861 3 H 0.065 0.935 4 C -0.130 4.130 5 C -0.071 4.071 6 C -0.141 4.141 7 C -0.094 4.094 8 C -0.165 4.165 9 C -0.091 4.091 10 C -0.204 4.204 11 C 0.195 3.805 12 N -0.570 5.570 13 C 0.513 3.487 14 O -0.454 6.454 15 C 0.166 3.834 16 N -0.548 5.548 17 C -0.257 4.257 18 H 0.078 0.922 19 C 0.009 3.991 20 N -0.897 5.897 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.124 3.876 26 C -0.195 4.195 27 C -0.222 4.222 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.177 0.823 39 H 0.049 0.951 40 H 0.125 0.875 41 H 0.251 0.749 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 -3.897 -9.587 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.168 4.168 5 C -0.108 4.108 6 C -0.144 4.144 7 C -0.113 4.113 8 C -0.185 4.185 9 C -0.109 4.109 10 C -0.224 4.224 11 C 0.097 3.903 12 N -0.298 5.298 13 C 0.300 3.700 14 O -0.320 6.320 15 C 0.038 3.962 16 N -0.265 5.265 17 C -0.385 4.385 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.542 5.542 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.014 3.986 26 C -0.233 4.233 27 C -0.263 4.263 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.193 0.807 39 H 0.067 0.933 40 H 0.141 0.859 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.000 -3.356 -9.521 12.285 hybrid contribution -0.240 0.683 0.622 0.954 sum 6.760 -2.673 -8.899 11.491 Atomic orbital electron populations 1.22070 0.92652 1.04369 1.00100 1.21270 0.95845 0.94969 0.84364 0.91737 1.21951 0.95375 1.01575 0.97930 1.20319 0.95148 1.01120 0.94214 1.19391 0.94725 1.06569 0.93753 1.20744 0.93804 0.99081 0.97685 1.20881 0.99709 1.04687 0.93185 1.20958 0.93411 0.98552 0.98009 1.22794 0.96924 1.03067 0.99620 1.17696 0.84382 0.94993 0.93236 1.46848 1.08211 1.56426 1.18273 1.22328 0.85504 0.81282 0.80880 1.90573 1.20814 1.46536 1.74105 1.21667 0.88594 0.93291 0.92624 1.43607 1.31235 1.17106 1.34536 1.19225 1.26284 0.90619 1.02395 0.90403 1.24882 1.00358 0.95695 0.97966 1.70003 1.43222 1.08335 1.32640 0.86080 0.78360 0.79387 0.81954 1.20501 1.21783 1.21787 1.20962 0.97917 0.86491 0.93194 1.23080 0.91064 1.04275 1.04880 1.23433 1.01905 0.97944 1.03022 0.89884 0.94309 0.92101 0.91350 0.90718 0.90985 0.91238 0.86731 0.86894 0.86194 0.80652 0.93302 0.85867 0.93811 0.89834 0.88286 0.90552 0.90634 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.73 37.16 0.29 -2.14 16 2 C 0.14 2.37 3.42 -67.48 -0.23 2.14 16 3 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.13 -1.75 5.38 -26.58 -0.14 -1.90 16 5 C -0.07 -0.89 5.78 -28.01 -0.16 -1.05 16 6 C -0.14 -2.13 5.76 -104.41 -0.60 -2.73 16 7 C -0.09 -1.26 9.66 -39.52 -0.38 -1.64 16 8 C -0.17 -2.19 10.04 -39.60 -0.40 -2.58 16 9 C -0.09 -1.33 10.05 -39.63 -0.40 -1.73 16 10 C -0.20 -3.58 7.59 -39.40 -0.30 -3.88 16 11 C 0.19 3.48 6.23 -83.62 -0.52 2.96 16 12 N -0.57 -11.21 2.97 -105.82 -0.31 -11.52 16 13 C 0.51 11.83 5.86 -10.99 -0.06 11.77 16 14 O -0.45 -11.97 10.43 5.55 0.06 -11.91 16 15 C 0.17 3.77 3.18 -5.19 -0.02 3.76 16 16 N -0.55 -13.26 2.56 -191.77 -0.49 -13.75 16 17 C -0.26 -6.77 8.96 -15.06 -0.13 -6.91 16 18 H 0.08 2.05 6.05 -52.49 -0.32 1.73 16 19 C 0.01 0.25 5.12 -17.43 -0.09 0.16 16 20 N -0.90 -24.71 7.20 55.49 0.40 -24.31 16 21 Si 0.91 21.88 29.56 -169.99 -5.03 16.85 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C 0.12 2.62 6.57 -67.92 -0.45 2.17 16 26 C -0.19 -3.78 9.77 -26.73 -0.26 -4.05 16 27 C -0.22 -4.09 10.33 -26.73 -0.28 -4.36 16 28 H 0.08 1.76 6.70 -51.93 -0.35 1.41 16 29 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.06 1.22 7.00 -51.93 -0.36 0.86 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.18 3.39 2.86 -82.81 -0.24 3.15 16 39 H 0.05 1.01 5.70 -51.93 -0.30 0.72 16 40 H 0.12 3.02 4.96 -51.92 -0.26 2.76 16 41 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 42 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 43 H 0.10 2.10 6.24 -51.93 -0.32 1.78 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -29.53 348.79 -11.02 -40.56 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.77 Total: 8.84 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -4.14 Total: -10.01 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.40 Total: -49.59 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.06 Total: -11.91 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.53 -11.02 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299509326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.279 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds