Wall clock time and date at job start Tue Mar 31 2020 11:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.83704 * 2 1 4 4 C 1.53426 * 109.79887 * 239.15886 * 2 1 3 5 5 C 1.52856 * 108.84732 * 177.16239 * 4 2 1 6 6 C 1.50599 * 110.49810 * 51.40857 * 5 4 2 7 7 C 1.38512 * 118.92997 * 159.46239 * 6 5 4 8 8 C 1.38121 * 120.30186 * 179.85659 * 7 6 5 9 9 C 1.38306 * 120.15650 * 359.97438 * 8 7 6 10 10 C 1.38030 * 119.90253 * 0.06364 * 9 8 7 11 11 C 1.38685 * 121.52844 * 339.14942 * 6 5 4 12 12 N 1.40178 * 120.74213 * 0.81750 * 11 6 5 13 13 C 1.34772 * 120.55341 * 166.42660 * 12 11 6 14 14 O 1.21290 * 120.00372 * 171.80970 * 13 12 11 15 15 C 1.50703 * 120.00051 * 351.80019 * 13 12 11 16 16 N 1.46500 * 109.47523 * 205.45935 * 15 13 12 17 17 C 1.36935 * 120.00623 * 270.00928 * 16 15 13 18 18 H 1.07996 * 119.99847 * 198.83891 * 17 16 15 19 19 C 1.38808 * 119.99757 * 18.83267 * 17 16 15 20 20 N 1.31615 * 120.00570 * 5.85940 * 19 17 16 21 21 Si 1.86803 * 119.99855 * 185.85817 * 19 17 16 22 22 H 1.48499 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47300 * 120.00024 * 21 19 17 24 24 H 1.48495 * 109.47123 * 239.99949 * 21 19 17 25 25 C 1.46503 * 119.99438 * 90.00025 * 16 15 13 26 26 C 1.53004 * 117.49698 * 184.84529 * 25 16 15 27 27 C 1.53000 * 60.00185 * 252.51191 * 26 25 16 28 28 H 1.08993 * 109.47547 * 314.36024 * 1 2 3 29 29 H 1.09005 * 109.47158 * 74.36612 * 1 2 3 30 30 H 1.09001 * 109.47172 * 194.35763 * 1 2 3 31 31 H 1.08993 * 109.57738 * 296.97461 * 4 2 1 32 32 H 1.09005 * 109.57142 * 57.23303 * 4 2 1 33 33 H 1.08996 * 109.27296 * 171.67391 * 5 4 2 34 34 H 1.09008 * 109.27171 * 291.18445 * 5 4 2 35 35 H 1.07995 * 119.84965 * 359.88828 * 7 6 5 36 36 H 1.07998 * 119.92071 * 179.97438 * 8 7 6 37 37 H 1.08001 * 120.04571 * 180.02562 * 9 8 7 38 38 H 1.08003 * 119.98241 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.47786 * 325.46708 * 15 13 12 40 40 H 1.09009 * 109.46705 * 85.46890 * 15 13 12 41 41 H 0.97001 * 120.00891 * 185.00791 * 20 19 17 42 42 H 1.09002 * 115.55404 * 330.55579 * 25 16 15 43 43 H 1.08997 * 117.50157 * 0.02562 * 26 25 16 44 44 H 1.09000 * 117.49460 * 145.02863 * 26 25 16 45 45 H 1.08994 * 117.50267 * 252.51348 * 27 26 25 46 46 H 1.09008 * 117.49615 * 107.48389 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8999 1.0253 0.0000 4 6 2.0497 -0.7401 -1.2394 5 6 3.5764 -0.6659 -1.2549 6 6 4.1395 -1.1132 0.0683 7 6 5.4598 -1.5275 0.1289 8 6 6.0062 -1.9408 1.3283 9 6 5.2373 -1.9430 2.4779 10 6 3.9205 -1.5324 2.4259 11 6 3.3694 -1.1127 1.2216 12 7 2.0276 -0.7085 1.1871 13 6 1.2091 -0.9605 2.2278 14 8 0.0958 -0.4800 2.2541 15 6 1.6772 -1.8397 3.3588 16 7 0.5182 -2.4507 4.0142 17 6 -0.0892 -1.8148 5.0639 18 1 -0.7266 -2.3701 5.7359 19 6 0.1146 -0.4564 5.2641 20 7 0.7962 0.2439 4.3825 21 14 -0.5786 0.3778 6.7850 22 1 -1.2991 -0.6224 7.6131 23 1 0.5315 0.9671 7.5759 24 1 -1.5189 1.4516 6.3754 25 6 0.0089 -3.7423 3.5464 26 6 -1.2705 -4.2742 4.1955 27 6 0.0774 -4.9225 4.5178 28 1 -0.3634 0.7184 0.7347 29 1 -0.3634 0.2770 -0.9897 30 1 -0.3633 -0.9956 0.2548 31 1 1.7351 -1.7829 -1.2008 32 1 1.6504 -0.2712 -2.1388 33 1 3.9599 -1.3106 -2.0456 34 1 3.8847 0.3618 -1.4475 35 1 6.0650 -1.5269 -0.7656 36 1 7.0362 -2.2630 1.3684 37 1 5.6665 -2.2661 3.4148 38 1 3.3188 -1.5340 3.3227 39 1 2.3269 -2.6219 2.9662 40 1 2.2283 -1.2385 4.0821 41 1 1.0011 1.1758 4.5570 42 1 0.1613 -3.9523 2.4877 43 1 -1.7334 -3.6631 4.9703 44 1 -1.9600 -4.8343 3.5638 45 1 0.2747 -5.9089 4.0981 46 1 0.5015 -4.7378 5.5048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299509326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:55 Heat of formation + Delta-G solvation = 92.168247 kcal Electronic energy + Delta-G solvation = -27989.175416 eV Core-core repulsion = 24461.282551 eV Total energy + Delta-G solvation = -3527.892864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01805 -39.50694 -38.65238 -37.16652 -35.34212 -34.88093 -32.75415 -32.27368 -30.70643 -29.00258 -28.49657 -26.04345 -25.00903 -23.37311 -23.13729 -22.98732 -21.70442 -21.59246 -19.91356 -18.81229 -18.09124 -17.60615 -17.16033 -16.57566 -16.22247 -16.03717 -15.67334 -15.49714 -15.14303 -15.01063 -14.55303 -14.40939 -14.16129 -13.98504 -13.61115 -13.43927 -13.27105 -13.04303 -12.93381 -12.82931 -12.75990 -12.47964 -12.38922 -12.22641 -12.05063 -12.00176 -11.86761 -11.57294 -11.49307 -11.31644 -10.94257 -10.77081 -10.44431 -9.93368 -9.48385 -8.65625 -8.39791 -7.80930 -5.24276 0.55991 0.61833 1.41287 1.44430 1.52679 2.17425 2.32680 2.53658 3.03060 3.18346 3.38825 3.48129 3.74870 3.85157 3.96526 4.08106 4.18705 4.25115 4.30310 4.37396 4.39369 4.44343 4.49272 4.54370 4.59390 4.72416 4.78409 4.80971 4.88020 4.92148 4.96097 4.99975 5.04398 5.12175 5.22591 5.27257 5.28252 5.31097 5.37488 5.46159 5.49001 5.66768 5.69151 5.79521 6.04753 6.26625 6.26997 6.82096 7.13934 7.74724 7.97587 8.23986 9.20111 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.005396 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.297481 B = 5187.400408 C = 5387.663316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.131 3.869 3 H 0.061 0.939 4 C -0.119 4.119 5 C -0.069 4.069 6 C -0.141 4.141 7 C -0.090 4.090 8 C -0.154 4.154 9 C -0.097 4.097 10 C -0.228 4.228 11 C 0.157 3.843 12 N -0.575 5.575 13 C 0.514 3.486 14 O -0.502 6.502 15 C 0.178 3.822 16 N -0.567 5.567 17 C -0.257 4.257 18 H 0.075 0.925 19 C -0.042 4.042 20 N -0.909 5.909 21 Si 0.965 3.035 22 H -0.270 1.270 23 H -0.288 1.288 24 H -0.306 1.306 25 C 0.093 3.907 26 C -0.192 4.192 27 C -0.192 4.192 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.149 0.851 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.238 0.762 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.178 -5.421 -11.986 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.029 3.971 3 H 0.079 0.921 4 C -0.157 4.157 5 C -0.106 4.106 6 C -0.144 4.144 7 C -0.108 4.108 8 C -0.173 4.173 9 C -0.116 4.116 10 C -0.248 4.248 11 C 0.061 3.939 12 N -0.302 5.302 13 C 0.302 3.698 14 O -0.373 6.373 15 C 0.050 3.950 16 N -0.285 5.285 17 C -0.387 4.387 18 H 0.092 0.908 19 C -0.238 4.238 20 N -0.555 5.555 21 Si 0.795 3.205 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.234 1.234 25 C -0.015 4.015 26 C -0.230 4.230 27 C -0.233 4.233 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.047 0.953 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.121 0.879 45 H 0.129 0.871 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.359 -4.925 -11.937 15.948 hybrid contribution -0.837 1.086 1.309 1.896 sum 8.522 -3.839 -10.628 14.153 Atomic orbital electron populations 1.21837 0.93775 1.01467 1.00670 1.21468 0.94996 0.95342 0.85343 0.92057 1.21902 0.96454 1.00582 0.96771 1.20424 0.93965 1.02660 0.93549 1.19802 0.95294 1.05499 0.93828 1.21209 0.93163 0.97310 0.99144 1.21319 1.00969 1.02634 0.92349 1.21194 0.92386 0.98253 0.99759 1.22632 0.98269 1.05052 0.98810 1.18014 0.83846 0.97297 0.94726 1.46618 1.08942 1.56510 1.18168 1.22183 0.85163 0.80884 0.81587 1.90552 1.22691 1.48478 1.75533 1.21529 0.88069 0.93294 0.92081 1.43775 1.31778 1.18207 1.34740 1.19375 1.25597 0.90713 1.02968 0.90775 1.25532 1.01493 0.96450 1.00315 1.70223 1.44346 1.07404 1.33522 0.85231 0.77447 0.78111 0.79673 1.19432 1.21521 1.23369 1.21207 0.99900 0.86236 0.94184 1.23094 0.91482 1.04123 1.04339 1.23387 1.00170 0.98189 1.01513 0.94018 0.90638 0.94808 0.92280 0.87540 0.87730 0.89765 0.82849 0.83423 0.84657 0.83456 0.91761 0.88438 0.95251 0.89264 0.90547 0.87855 0.87134 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 7.73 71.98 0.56 -3.95 16 2 C 0.13 4.51 3.42 45.05 0.15 4.67 16 3 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.12 -2.91 5.38 30.69 0.17 -2.75 16 5 C -0.07 -1.46 5.78 29.77 0.17 -1.28 16 6 C -0.14 -3.88 5.76 -19.72 -0.11 -3.99 16 7 C -0.09 -1.99 9.66 22.31 0.22 -1.78 16 8 C -0.15 -3.49 10.04 22.26 0.22 -3.26 16 9 C -0.10 -2.74 10.05 22.24 0.22 -2.52 16 10 C -0.23 -8.17 7.59 22.39 0.17 -8.00 16 11 C 0.16 5.62 6.23 38.08 0.24 5.86 16 12 N -0.58 -23.45 2.97 -607.08 -1.80 -25.25 16 13 C 0.51 25.22 5.86 87.66 0.51 25.74 16 14 O -0.50 -28.42 10.43 -3.06 -0.03 -28.45 16 15 C 0.18 8.59 3.18 85.63 0.27 8.86 16 16 N -0.57 -28.72 2.56 -760.65 -1.94 -30.67 16 17 C -0.26 -14.19 8.96 84.03 0.75 -13.44 16 18 H 0.07 4.05 6.05 -2.91 -0.02 4.03 16 19 C -0.04 -2.38 5.12 84.86 0.43 -1.95 16 20 N -0.91 -53.37 7.20 21.65 0.16 -53.21 16 21 Si 0.97 47.06 29.56 68.60 2.03 49.09 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 25 C 0.09 3.98 6.57 44.99 0.30 4.28 16 26 C -0.19 -7.42 9.77 30.60 0.30 -7.12 16 27 C -0.19 -6.85 10.33 30.60 0.32 -6.53 16 28 H 0.04 1.88 6.70 -2.39 -0.02 1.87 16 29 H 0.08 2.18 8.08 -2.38 -0.02 2.16 16 30 H 0.03 1.42 7.00 -2.39 -0.02 1.40 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16 34 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 38 H 0.15 6.13 2.86 -31.40 -0.09 6.04 16 39 H 0.06 2.82 5.70 -2.39 -0.01 2.81 16 40 H 0.10 5.18 4.96 -2.38 -0.01 5.17 16 41 H 0.24 14.07 8.32 -92.71 -0.77 13.29 16 42 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 43 H 0.08 3.31 6.24 -2.39 -0.01 3.29 16 44 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 45 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 46 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 Total: -1.00 -69.90 348.79 4.20 -65.70 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.90 Total: 29.96 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 4.89 Total: -7.17 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -3.59 Total: -109.13 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.03 Total: -28.45 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -69.90 4.20 -65.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299509326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.869 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds