Wall clock time and date at job start Tue Mar 31 2020 11:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.80984 * 2 1 4 4 C 1.53012 * 109.64032 * 239.46646 * 2 1 3 5 5 C 1.50067 * 110.14903 * 289.75022 * 4 2 1 6 6 C 1.29443 * 124.07537 * 342.89921 * 5 4 2 7 7 C 1.50065 * 124.07746 * 0.43918 * 6 5 4 8 8 C 1.53025 * 110.14347 * 342.87171 * 7 6 5 9 9 H 1.09001 * 109.64643 * 289.74908 * 8 7 6 10 10 C 1.50707 * 109.64073 * 169.11686 * 8 7 6 11 11 O 1.21282 * 120.00317 * 256.73454 * 10 8 7 12 12 N 1.34774 * 119.99630 * 76.73186 * 10 8 7 13 13 C 1.46505 * 120.00186 * 4.32285 * 12 10 8 14 14 C 1.50703 * 109.46934 * 84.54273 * 13 12 10 15 15 H 1.07994 * 120.00374 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99409 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00272 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99640 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46804 * 60.00585 * 18 16 14 20 20 H 1.48498 * 109.46940 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47049 * 300.00809 * 18 16 14 22 22 C 1.46499 * 119.99922 * 184.32150 * 12 10 8 23 23 C 1.50700 * 109.47095 * 90.00215 * 22 12 10 24 24 C 1.38672 * 120.42009 * 90.00461 * 23 22 12 25 25 C 1.38623 * 118.42044 * 180.02562 * 24 23 22 26 26 C 1.38228 * 119.16305 * 359.97438 * 25 24 23 27 27 N 1.31856 * 120.76143 * 0.02562 * 26 25 24 28 28 C 1.31880 * 121.72822 * 359.70136 * 27 26 25 29 29 H 1.09001 * 109.46978 * 180.53192 * 1 2 3 30 30 H 1.09003 * 109.46881 * 300.53219 * 1 2 3 31 31 H 1.09005 * 109.46855 * 60.53247 * 1 2 3 32 32 H 1.09003 * 109.36044 * 169.54854 * 4 2 1 33 33 H 1.09002 * 109.36269 * 49.96077 * 4 2 1 34 34 H 1.08004 * 117.96013 * 162.87275 * 5 4 2 35 35 H 1.08008 * 117.96040 * 180.47222 * 6 5 4 36 36 H 1.08996 * 109.35997 * 103.07825 * 7 6 5 37 37 H 1.09005 * 109.35946 * 222.80661 * 7 6 5 38 38 H 1.09001 * 109.46959 * 204.54195 * 13 12 10 39 39 H 1.08999 * 109.46868 * 324.54238 * 13 12 10 40 40 H 0.97003 * 119.99751 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.47045 * 210.00171 * 22 12 10 42 42 H 1.08998 * 109.47338 * 329.99839 * 22 12 10 43 43 H 1.08004 * 120.78757 * 359.97187 * 24 23 22 44 44 H 1.08001 * 120.42059 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.62019 * 180.02562 * 26 25 24 46 46 H 1.08000 * 119.62283 * 180.31054 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8995 1.0254 0.0000 4 6 2.0444 -0.7321 -1.2413 5 6 1.7698 -2.2029 -1.1248 6 6 1.4808 -2.8009 -0.0138 7 6 1.3708 -2.1057 1.3115 8 6 2.0456 -0.7339 1.2446 9 1 3.1261 -0.8600 1.1746 10 6 1.7029 0.0600 2.4789 11 8 0.8755 0.9448 2.4205 12 7 2.3159 -0.2133 3.6476 13 6 3.3822 -1.2167 3.6984 14 6 4.6921 -0.5773 3.3156 15 1 4.7270 0.4715 3.0605 16 6 5.8463 -1.3313 3.2922 17 7 5.8040 -2.6083 3.6034 18 14 7.4699 -0.5390 2.8170 19 1 7.7796 0.5617 3.7646 20 1 8.5508 -1.5560 2.8686 21 1 7.3699 0.0070 1.4397 22 6 1.9159 0.4929 4.8673 23 6 0.8160 -0.2747 5.5543 24 6 1.1200 -1.2450 6.4972 25 6 0.0759 -1.9262 7.1032 26 6 -1.2245 -1.6174 6.7505 27 7 -1.4764 -0.6882 5.8495 28 6 -0.5086 -0.0166 5.2566 29 1 -0.3633 -1.0276 0.0095 30 1 -0.3633 0.5221 0.8852 31 1 -0.3633 0.5056 -0.8948 32 1 3.1183 -0.5717 -1.3364 33 1 1.5428 -0.3399 -2.1260 34 1 1.8157 -2.7994 -2.0240 35 1 1.3087 -3.8668 -0.0423 36 1 0.3187 -1.9787 1.5667 37 1 1.8581 -2.7088 2.0776 38 1 3.4555 -1.6181 4.7092 39 1 3.1548 -2.0241 3.0024 40 1 6.6159 -3.1388 3.5865 41 1 2.7727 0.5771 5.5359 42 1 1.5573 1.4893 4.6092 43 1 2.1461 -1.4654 6.7525 44 1 0.2757 -2.6880 7.8422 45 1 -2.0437 -2.1432 7.2184 46 1 -0.7538 0.7409 4.5270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341002937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:57 Heat of formation + Delta-G solvation = 3.174716 kcal Electronic energy + Delta-G solvation = -27248.236590 eV Core-core repulsion = 23716.484676 eV Total energy + Delta-G solvation = -3531.751913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.27673 -39.64931 -37.54719 -35.27690 -33.11525 -32.15830 -31.62409 -31.49996 -30.41230 -27.57816 -27.00534 -25.67942 -23.65297 -23.33423 -22.67368 -22.00698 -20.83974 -18.46087 -16.96709 -16.84184 -16.71752 -16.32825 -15.98015 -15.76027 -15.19881 -14.98799 -14.46531 -14.18592 -13.75358 -13.69842 -13.48716 -13.12641 -12.89644 -12.81615 -12.70027 -12.43676 -12.14531 -11.89545 -11.81999 -11.57531 -11.35456 -11.19160 -10.99424 -10.85254 -10.69958 -10.51764 -10.23497 -10.07565 -9.84960 -9.83492 -9.58448 -9.25693 -8.97424 -8.69945 -8.67530 -8.49382 -7.79488 -6.23680 -4.31150 1.29946 1.50918 2.61178 3.20560 3.26010 3.27589 3.37982 3.79421 4.20157 4.30374 4.65854 4.97390 5.02944 5.05062 5.09971 5.15980 5.21863 5.29941 5.32931 5.52825 5.59054 5.64042 5.67218 5.77197 5.86926 5.90657 6.00319 6.03014 6.09777 6.16223 6.21878 6.26204 6.31044 6.32918 6.46586 6.55089 6.62273 6.64212 6.73819 6.91834 6.94059 6.99738 7.14952 7.28194 7.48002 7.71426 8.00435 8.17608 8.26894 8.74285 8.99548 9.37031 10.82749 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008818 B = 0.006430 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.575266 B = 4353.507137 C = 6434.745829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.068 4.068 3 H 0.072 0.928 4 C -0.086 4.086 5 C -0.157 4.157 6 C -0.143 4.143 7 C -0.079 4.079 8 C -0.100 4.100 9 H 0.113 0.887 10 C 0.528 3.472 11 O -0.567 6.567 12 N -0.592 5.592 13 C 0.236 3.764 14 C -0.540 4.540 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.158 3.842 23 C -0.143 4.143 24 C -0.060 4.060 25 C -0.178 4.178 26 C 0.088 3.912 27 N -0.491 5.491 28 C 0.115 3.885 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.266 0.734 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.149 0.851 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 -0.046 -0.415 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.175 4.175 6 C -0.162 4.162 7 C -0.116 4.116 8 C -0.121 4.121 9 H 0.131 0.869 10 C 0.317 3.683 11 O -0.448 6.448 12 N -0.321 5.321 13 C 0.116 3.884 14 C -0.579 4.579 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.034 3.966 23 C -0.147 4.147 24 C -0.086 4.086 25 C -0.198 4.198 26 C -0.069 4.069 27 N -0.200 5.200 28 C -0.042 4.042 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.167 0.833 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.484 0.406 -0.636 9.514 hybrid contribution 2.145 -0.209 0.040 2.156 sum -7.339 0.197 -0.596 7.366 Atomic orbital electron populations 1.22048 0.94937 1.01537 1.02437 1.20918 0.96404 0.98668 0.92730 0.90938 1.20527 1.01092 0.92742 0.97977 1.21950 1.01630 0.96412 0.97554 1.21946 1.00742 0.99125 0.94341 1.20416 1.00530 0.94544 0.96160 1.21348 1.03597 0.94741 0.92385 0.86896 1.20466 0.80011 0.83140 0.84646 1.90502 1.35387 1.33275 1.85650 1.48260 1.36782 1.41168 1.05931 1.19539 0.83702 0.86567 0.98577 1.21456 0.92226 0.96623 1.47576 0.92122 1.24913 0.99097 0.94740 0.94817 1.69902 1.29065 1.06128 1.47629 0.86605 0.82810 0.79051 0.79340 1.20133 1.21140 1.20016 1.20124 0.94671 0.94944 0.86859 1.21457 0.96844 0.98739 0.97623 1.21629 1.00086 0.93161 0.93747 1.22098 0.94002 1.01586 1.02080 1.22693 0.95746 0.94369 0.94131 1.67702 1.37246 1.06971 1.08074 1.22822 0.88095 0.97007 0.96266 0.93170 0.89995 0.94039 0.90898 0.91398 0.88464 0.88180 0.91060 0.89998 0.94853 0.93831 0.92441 0.89452 0.89612 0.84605 0.85118 0.83328 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.31 37.16 0.31 -2.06 16 2 C -0.07 -1.11 2.40 -90.40 -0.22 -1.33 16 3 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 4 C -0.09 -1.23 5.55 -28.18 -0.16 -1.38 16 5 C -0.16 -2.23 9.41 -35.90 -0.34 -2.57 16 6 C -0.14 -2.16 9.15 -35.90 -0.33 -2.49 16 7 C -0.08 -1.34 4.59 -28.18 -0.13 -1.47 16 8 C -0.10 -1.82 1.51 -91.54 -0.14 -1.96 16 9 H 0.11 2.33 6.74 -51.93 -0.35 1.98 16 10 C 0.53 10.40 6.71 -10.98 -0.07 10.33 16 11 O -0.57 -11.60 13.18 5.56 0.07 -11.53 16 12 N -0.59 -11.67 2.45 -176.43 -0.43 -12.10 16 13 C 0.24 5.26 4.81 -5.19 -0.02 5.23 16 14 C -0.54 -13.40 8.63 -34.44 -0.30 -13.69 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -23.58 13.29 55.43 0.74 -22.85 16 18 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C 0.16 2.74 5.57 -5.19 -0.03 2.71 16 23 C -0.14 -2.32 5.48 -104.48 -0.57 -2.89 16 24 C -0.06 -0.88 9.86 -39.28 -0.39 -1.27 16 25 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 26 C 0.09 1.18 11.18 -17.54 -0.20 0.99 16 27 N -0.49 -7.89 10.36 -13.25 -0.14 -8.03 16 28 C 0.12 1.90 10.86 -17.55 -0.19 1.71 16 29 H 0.05 0.76 5.67 -51.93 -0.29 0.47 16 30 H 0.08 1.44 5.71 -51.93 -0.30 1.14 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.10 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.10 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.07 1.20 6.86 -51.93 -0.36 0.84 16 37 H 0.08 1.49 6.11 -51.93 -0.32 1.17 16 38 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 39 H 0.04 1.02 4.80 -51.93 -0.25 0.77 16 40 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 42 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 43 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 46 H 0.16 2.62 7.85 -52.49 -0.41 2.21 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -27.42 365.79 -9.37 -36.80 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.84 Total: 8.42 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.27 Total: -11.22 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.17 Total: -42.98 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.42 -9.37 -36.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341002937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.970 kcal (2) G-P(sol) polarization free energy of solvation -27.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds