Wall clock time and date at job start Tue Mar 31 2020 11:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.80984 * 2 1 4 4 C 1.53012 * 109.64032 * 239.46646 * 2 1 3 5 5 C 1.50067 * 110.14903 * 289.75022 * 4 2 1 6 6 C 1.29443 * 124.07537 * 342.89921 * 5 4 2 7 7 C 1.50065 * 124.07746 * 0.43918 * 6 5 4 8 8 C 1.53025 * 110.14347 * 342.87171 * 7 6 5 9 9 H 1.09001 * 109.64643 * 289.74908 * 8 7 6 10 10 C 1.50707 * 109.64073 * 169.11686 * 8 7 6 11 11 O 1.21282 * 120.00317 * 256.73454 * 10 8 7 12 12 N 1.34774 * 119.99630 * 76.73186 * 10 8 7 13 13 C 1.46505 * 120.00186 * 4.32285 * 12 10 8 14 14 C 1.50703 * 109.46934 * 84.54273 * 13 12 10 15 15 H 1.07994 * 120.00374 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99409 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00272 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99640 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46804 * 60.00585 * 18 16 14 20 20 H 1.48498 * 109.46940 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47049 * 300.00809 * 18 16 14 22 22 C 1.46499 * 119.99922 * 184.32150 * 12 10 8 23 23 C 1.50700 * 109.47095 * 90.00215 * 22 12 10 24 24 C 1.38672 * 120.42009 * 90.00461 * 23 22 12 25 25 C 1.38623 * 118.42044 * 180.02562 * 24 23 22 26 26 C 1.38228 * 119.16305 * 359.97438 * 25 24 23 27 27 N 1.31856 * 120.76143 * 0.02562 * 26 25 24 28 28 C 1.31880 * 121.72822 * 359.70136 * 27 26 25 29 29 H 1.09001 * 109.46978 * 180.53192 * 1 2 3 30 30 H 1.09003 * 109.46881 * 300.53219 * 1 2 3 31 31 H 1.09005 * 109.46855 * 60.53247 * 1 2 3 32 32 H 1.09003 * 109.36044 * 169.54854 * 4 2 1 33 33 H 1.09002 * 109.36269 * 49.96077 * 4 2 1 34 34 H 1.08004 * 117.96013 * 162.87275 * 5 4 2 35 35 H 1.08008 * 117.96040 * 180.47222 * 6 5 4 36 36 H 1.08996 * 109.35997 * 103.07825 * 7 6 5 37 37 H 1.09005 * 109.35946 * 222.80661 * 7 6 5 38 38 H 1.09001 * 109.46959 * 204.54195 * 13 12 10 39 39 H 1.08999 * 109.46868 * 324.54238 * 13 12 10 40 40 H 0.97003 * 119.99751 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.47045 * 210.00171 * 22 12 10 42 42 H 1.08998 * 109.47338 * 329.99839 * 22 12 10 43 43 H 1.08004 * 120.78757 * 359.97187 * 24 23 22 44 44 H 1.08001 * 120.42059 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.62019 * 180.02562 * 26 25 24 46 46 H 1.08000 * 119.62283 * 180.31054 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8995 1.0254 0.0000 4 6 2.0444 -0.7321 -1.2413 5 6 1.7698 -2.2029 -1.1248 6 6 1.4808 -2.8009 -0.0138 7 6 1.3708 -2.1057 1.3115 8 6 2.0456 -0.7339 1.2446 9 1 3.1261 -0.8600 1.1746 10 6 1.7029 0.0600 2.4789 11 8 0.8755 0.9448 2.4205 12 7 2.3159 -0.2133 3.6476 13 6 3.3822 -1.2167 3.6984 14 6 4.6921 -0.5773 3.3156 15 1 4.7270 0.4715 3.0605 16 6 5.8463 -1.3313 3.2922 17 7 5.8040 -2.6083 3.6034 18 14 7.4699 -0.5390 2.8170 19 1 7.7796 0.5617 3.7646 20 1 8.5508 -1.5560 2.8686 21 1 7.3699 0.0070 1.4397 22 6 1.9159 0.4929 4.8673 23 6 0.8160 -0.2747 5.5543 24 6 1.1200 -1.2450 6.4972 25 6 0.0759 -1.9262 7.1032 26 6 -1.2245 -1.6174 6.7505 27 7 -1.4764 -0.6882 5.8495 28 6 -0.5086 -0.0166 5.2566 29 1 -0.3633 -1.0276 0.0095 30 1 -0.3633 0.5221 0.8852 31 1 -0.3633 0.5056 -0.8948 32 1 3.1183 -0.5717 -1.3364 33 1 1.5428 -0.3399 -2.1260 34 1 1.8157 -2.7994 -2.0240 35 1 1.3087 -3.8668 -0.0423 36 1 0.3187 -1.9787 1.5667 37 1 1.8581 -2.7088 2.0776 38 1 3.4555 -1.6181 4.7092 39 1 3.1548 -2.0241 3.0024 40 1 6.6159 -3.1388 3.5865 41 1 2.7727 0.5771 5.5359 42 1 1.5573 1.4893 4.6092 43 1 2.1461 -1.4654 6.7525 44 1 0.2757 -2.6880 7.8422 45 1 -2.0437 -2.1432 7.2184 46 1 -0.7538 0.7409 4.5270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341002937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:56 Heat of formation + Delta-G solvation = -9.104964 kcal Electronic energy + Delta-G solvation = -27248.769077 eV Core-core repulsion = 23716.484676 eV Total energy + Delta-G solvation = -3532.284400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68561 -40.90184 -38.92999 -36.90014 -34.83906 -33.61342 -32.88429 -32.72511 -31.71377 -29.31778 -28.35965 -27.07521 -25.23770 -24.57255 -24.20671 -23.26040 -22.12267 -19.97337 -18.70008 -18.18881 -18.04177 -17.83180 -17.33125 -17.05553 -16.66663 -16.41261 -16.17723 -15.53336 -15.08073 -14.97515 -14.71863 -14.46518 -14.26094 -14.20614 -14.01662 -13.94252 -13.64462 -13.36077 -13.25098 -13.06310 -12.90079 -12.70413 -12.49760 -12.39109 -12.16468 -12.09227 -11.80560 -11.66774 -11.46176 -11.14403 -10.80510 -10.62052 -10.46983 -10.32772 -9.92606 -9.81655 -9.44906 -8.19615 -6.33281 0.12776 0.32897 1.41660 1.43115 1.45499 1.49962 1.79311 2.30548 2.45480 2.95470 3.10791 3.52452 3.63716 3.76586 3.84534 3.89310 3.96856 4.08982 4.10408 4.25176 4.36039 4.38575 4.46413 4.49379 4.57432 4.67880 4.69682 4.75236 4.77974 4.86691 4.88999 4.94569 4.99687 5.10281 5.18198 5.20588 5.24627 5.32931 5.36143 5.37116 5.60435 5.66657 5.77975 5.82338 5.86086 6.07774 6.10139 6.56302 6.82645 7.00674 7.32791 7.43953 8.85299 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008818 B = 0.006430 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.575266 B = 4353.507137 C = 6434.745829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 H 0.060 0.940 4 C -0.086 4.086 5 C -0.148 4.148 6 C -0.163 4.163 7 C -0.070 4.070 8 C -0.097 4.097 9 H 0.086 0.914 10 C 0.522 3.478 11 O -0.577 6.577 12 N -0.594 5.594 13 C 0.254 3.746 14 C -0.547 4.547 15 H 0.050 0.950 16 C 0.028 3.972 17 N -0.915 5.915 18 Si 0.949 3.051 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.273 1.273 22 C 0.159 3.841 23 C -0.154 4.154 24 C -0.069 4.069 25 C -0.166 4.166 26 C 0.088 3.912 27 N -0.511 5.511 28 C 0.104 3.896 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.033 0.967 40 H 0.267 0.733 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.167 0.833 45 H 0.186 0.814 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.729 -0.875 -0.902 8.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.123 4.123 5 C -0.166 4.166 6 C -0.181 4.181 7 C -0.108 4.108 8 C -0.118 4.118 9 H 0.104 0.896 10 C 0.312 3.688 11 O -0.459 6.459 12 N -0.324 5.324 13 C 0.133 3.867 14 C -0.585 4.585 15 H 0.068 0.932 16 C -0.173 4.173 17 N -0.554 5.554 18 Si 0.774 3.226 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.198 1.198 22 C 0.035 3.965 23 C -0.157 4.157 24 C -0.096 4.096 25 C -0.186 4.186 26 C -0.069 4.069 27 N -0.220 5.220 28 C -0.053 4.053 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.156 0.844 44 H 0.184 0.816 45 H 0.203 0.797 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.885 -0.404 -1.120 9.956 hybrid contribution 2.213 0.055 0.256 2.229 sum -7.672 -0.349 -0.864 7.728 Atomic orbital electron populations 1.21932 0.94194 1.01635 1.02284 1.20939 0.96944 0.98054 0.92804 0.92133 1.20566 1.01216 0.92831 0.97676 1.22209 0.99736 0.96457 0.98214 1.21998 1.02536 1.00016 0.93511 1.20283 0.99770 0.93547 0.97164 1.21306 1.01980 0.95744 0.92750 0.89623 1.20809 0.79811 0.83138 0.85080 1.90497 1.35794 1.33702 1.85869 1.48234 1.36303 1.40878 1.06952 1.19154 0.83579 0.86629 0.97304 1.21629 0.93454 0.96146 1.47299 0.93208 1.25539 1.01814 0.95135 0.94815 1.69985 1.29791 1.07072 1.48539 0.85750 0.79507 0.78312 0.78998 1.19836 1.20673 1.19814 1.20160 0.95274 0.94876 0.86147 1.21272 0.96177 0.99675 0.98607 1.21793 1.01001 0.93105 0.93698 1.22465 0.93105 1.01272 1.01718 1.23341 0.97233 0.93323 0.92968 1.67709 1.37246 1.07937 1.09070 1.22639 0.88393 0.97484 0.96753 0.92820 0.92363 0.91958 0.91056 0.88733 0.85647 0.86501 0.91387 0.92004 0.95990 0.94888 0.92359 0.89356 0.89949 0.84377 0.81559 0.79699 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 8.31 71.99 0.60 -3.76 16 2 C -0.07 -2.21 2.40 -10.65 -0.03 -2.23 16 3 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 4 C -0.09 -2.29 5.55 29.65 0.16 -2.12 16 5 C -0.15 -3.86 9.41 27.04 0.25 -3.61 16 6 C -0.16 -4.72 9.15 27.04 0.25 -4.47 16 7 C -0.07 -2.42 4.59 29.66 0.14 -2.29 16 8 C -0.10 -3.62 1.51 -11.39 -0.02 -3.64 16 9 H 0.09 3.68 6.74 -2.39 -0.02 3.66 16 10 C 0.52 21.36 6.71 87.66 0.59 21.95 16 11 O -0.58 -24.49 13.18 -3.04 -0.04 -24.53 16 12 N -0.59 -24.41 2.45 -830.48 -2.04 -26.45 16 13 C 0.25 11.73 4.81 85.63 0.41 12.14 16 14 C -0.55 -27.74 8.63 25.60 0.22 -27.51 16 15 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 16 C 0.03 1.43 5.46 84.66 0.46 1.89 16 17 N -0.91 -48.93 13.29 21.45 0.28 -48.65 16 18 Si 0.95 41.04 29.54 68.60 2.03 43.07 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 22 C 0.16 5.74 5.57 85.63 0.48 6.22 16 23 C -0.15 -5.09 5.48 -19.77 -0.11 -5.20 16 24 C -0.07 -2.02 9.86 22.47 0.22 -1.80 16 25 C -0.17 -3.93 10.11 22.36 0.23 -3.71 16 26 C 0.09 2.19 11.18 84.69 0.95 3.14 16 27 N -0.51 -16.10 10.36 -195.84 -2.03 -18.13 16 28 C 0.10 3.49 10.86 84.67 0.92 4.41 16 29 H 0.05 1.58 5.67 -2.39 -0.01 1.56 16 30 H 0.06 2.06 5.71 -2.39 -0.01 2.04 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 2.04 8.11 -2.39 -0.02 2.02 16 34 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.07 2.34 6.86 -2.39 -0.02 2.32 16 37 H 0.06 2.34 6.11 -2.38 -0.01 2.33 16 38 H 0.02 1.06 8.03 -2.39 -0.02 1.04 16 39 H 0.03 1.61 4.80 -2.39 -0.01 1.60 16 40 H 0.27 13.66 8.31 -92.71 -0.77 12.88 16 41 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 42 H 0.08 2.98 7.32 -2.39 -0.02 2.97 16 43 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 44 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 46 H 0.14 5.08 7.85 -2.91 -0.02 5.06 16 Total: -1.00 -59.29 365.79 4.90 -54.39 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.97 Total: 30.87 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 5.72 Total: -10.58 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -3.78 Total: -93.22 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.04 Total: -24.53 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -59.29 4.90 -54.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341002937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.284 kcal (2) G-P(sol) polarization free energy of solvation -59.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds