Wall clock time and date at job start Tue Mar 31 2020 11:59:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 H 1.08993 * 109.80984 * 2 1
4 4 C 1.53012 * 109.64032 * 239.46646 * 2 1 3
5 5 C 1.50067 * 110.14903 * 289.75022 * 4 2 1
6 6 C 1.29443 * 124.07537 * 342.89921 * 5 4 2
7 7 C 1.50065 * 124.07746 * 0.43918 * 6 5 4
8 8 C 1.53025 * 110.14347 * 342.87171 * 7 6 5
9 9 H 1.09001 * 109.64643 * 289.74908 * 8 7 6
10 10 C 1.50707 * 109.64073 * 169.11686 * 8 7 6
11 11 O 1.21282 * 120.00317 * 256.73454 * 10 8 7
12 12 N 1.34774 * 119.99630 * 76.73186 * 10 8 7
13 13 C 1.46505 * 120.00186 * 4.32285 * 12 10 8
14 14 C 1.50703 * 109.46934 * 84.54273 * 13 12 10
15 15 H 1.07994 * 120.00374 * 0.02562 * 14 13 12
16 16 C 1.37878 * 119.99409 * 179.97438 * 14 13 12
17 17 N 1.31507 * 120.00272 * 0.02562 * 16 14 13
18 18 Si 1.86809 * 119.99640 * 179.97438 * 16 14 13
19 19 H 1.48503 * 109.46804 * 60.00585 * 18 16 14
20 20 H 1.48498 * 109.46940 * 180.02562 * 18 16 14
21 21 H 1.48497 * 109.47049 * 300.00809 * 18 16 14
22 22 C 1.46499 * 119.99922 * 184.32150 * 12 10 8
23 23 C 1.50700 * 109.47095 * 90.00215 * 22 12 10
24 24 C 1.38672 * 120.42009 * 90.00461 * 23 22 12
25 25 C 1.38623 * 118.42044 * 180.02562 * 24 23 22
26 26 C 1.38228 * 119.16305 * 359.97438 * 25 24 23
27 27 N 1.31856 * 120.76143 * 0.02562 * 26 25 24
28 28 C 1.31880 * 121.72822 * 359.70136 * 27 26 25
29 29 H 1.09001 * 109.46978 * 180.53192 * 1 2 3
30 30 H 1.09003 * 109.46881 * 300.53219 * 1 2 3
31 31 H 1.09005 * 109.46855 * 60.53247 * 1 2 3
32 32 H 1.09003 * 109.36044 * 169.54854 * 4 2 1
33 33 H 1.09002 * 109.36269 * 49.96077 * 4 2 1
34 34 H 1.08004 * 117.96013 * 162.87275 * 5 4 2
35 35 H 1.08008 * 117.96040 * 180.47222 * 6 5 4
36 36 H 1.08996 * 109.35997 * 103.07825 * 7 6 5
37 37 H 1.09005 * 109.35946 * 222.80661 * 7 6 5
38 38 H 1.09001 * 109.46959 * 204.54195 * 13 12 10
39 39 H 1.08999 * 109.46868 * 324.54238 * 13 12 10
40 40 H 0.97003 * 119.99751 * 179.97438 * 17 16 14
41 41 H 1.09004 * 109.47045 * 210.00171 * 22 12 10
42 42 H 1.08998 * 109.47338 * 329.99839 * 22 12 10
43 43 H 1.08004 * 120.78757 * 359.97187 * 24 23 22
44 44 H 1.08001 * 120.42059 * 180.02562 * 25 24 23
45 45 H 1.08004 * 119.62019 * 180.02562 * 26 25 24
46 46 H 1.08000 * 119.62283 * 180.31054 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8995 1.0254 0.0000
4 6 2.0444 -0.7321 -1.2413
5 6 1.7698 -2.2029 -1.1248
6 6 1.4808 -2.8009 -0.0138
7 6 1.3708 -2.1057 1.3115
8 6 2.0456 -0.7339 1.2446
9 1 3.1261 -0.8600 1.1746
10 6 1.7029 0.0600 2.4789
11 8 0.8755 0.9448 2.4205
12 7 2.3159 -0.2133 3.6476
13 6 3.3822 -1.2167 3.6984
14 6 4.6921 -0.5773 3.3156
15 1 4.7270 0.4715 3.0605
16 6 5.8463 -1.3313 3.2922
17 7 5.8040 -2.6083 3.6034
18 14 7.4699 -0.5390 2.8170
19 1 7.7796 0.5617 3.7646
20 1 8.5508 -1.5560 2.8686
21 1 7.3699 0.0070 1.4397
22 6 1.9159 0.4929 4.8673
23 6 0.8160 -0.2747 5.5543
24 6 1.1200 -1.2450 6.4972
25 6 0.0759 -1.9262 7.1032
26 6 -1.2245 -1.6174 6.7505
27 7 -1.4764 -0.6882 5.8495
28 6 -0.5086 -0.0166 5.2566
29 1 -0.3633 -1.0276 0.0095
30 1 -0.3633 0.5221 0.8852
31 1 -0.3633 0.5056 -0.8948
32 1 3.1183 -0.5717 -1.3364
33 1 1.5428 -0.3399 -2.1260
34 1 1.8157 -2.7994 -2.0240
35 1 1.3087 -3.8668 -0.0423
36 1 0.3187 -1.9787 1.5667
37 1 1.8581 -2.7088 2.0776
38 1 3.4555 -1.6181 4.7092
39 1 3.1548 -2.0241 3.0024
40 1 6.6159 -3.1388 3.5865
41 1 2.7727 0.5771 5.5359
42 1 1.5573 1.4893 4.6092
43 1 2.1461 -1.4654 6.7525
44 1 0.2757 -2.6880 7.8422
45 1 -2.0437 -2.1432 7.2184
46 1 -0.7538 0.7409 4.5270
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000341002937.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:59:56
Heat of formation + Delta-G solvation = -9.104964 kcal
Electronic energy + Delta-G solvation = -27248.769077 eV
Core-core repulsion = 23716.484676 eV
Total energy + Delta-G solvation = -3532.284400 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.68561 -40.90184 -38.92999 -36.90014 -34.83906 -33.61342 -32.88429 -32.72511
-31.71377 -29.31778 -28.35965 -27.07521 -25.23770 -24.57255 -24.20671 -23.26040
-22.12267 -19.97337 -18.70008 -18.18881 -18.04177 -17.83180 -17.33125 -17.05553
-16.66663 -16.41261 -16.17723 -15.53336 -15.08073 -14.97515 -14.71863 -14.46518
-14.26094 -14.20614 -14.01662 -13.94252 -13.64462 -13.36077 -13.25098 -13.06310
-12.90079 -12.70413 -12.49760 -12.39109 -12.16468 -12.09227 -11.80560 -11.66774
-11.46176 -11.14403 -10.80510 -10.62052 -10.46983 -10.32772 -9.92606 -9.81655
-9.44906 -8.19615 -6.33281 0.12776 0.32897 1.41660 1.43115 1.45499
1.49962 1.79311 2.30548 2.45480 2.95470 3.10791 3.52452 3.63716
3.76586 3.84534 3.89310 3.96856 4.08982 4.10408 4.25176 4.36039
4.38575 4.46413 4.49379 4.57432 4.67880 4.69682 4.75236 4.77974
4.86691 4.88999 4.94569 4.99687 5.10281 5.18198 5.20588 5.24627
5.32931 5.36143 5.37116 5.60435 5.66657 5.77975 5.82338 5.86086
6.07774 6.10139 6.56302 6.82645 7.00674 7.32791 7.43953 8.85299
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.008818 B = 0.006430 C = 0.004350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3174.575266 B = 4353.507137 C = 6434.745829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.068 4.068
3 H 0.060 0.940
4 C -0.086 4.086
5 C -0.148 4.148
6 C -0.163 4.163
7 C -0.070 4.070
8 C -0.097 4.097
9 H 0.086 0.914
10 C 0.522 3.478
11 O -0.577 6.577
12 N -0.594 5.594
13 C 0.254 3.746
14 C -0.547 4.547
15 H 0.050 0.950
16 C 0.028 3.972
17 N -0.915 5.915
18 Si 0.949 3.051
19 H -0.273 1.273
20 H -0.281 1.281
21 H -0.273 1.273
22 C 0.159 3.841
23 C -0.154 4.154
24 C -0.069 4.069
25 C -0.166 4.166
26 C 0.088 3.912
27 N -0.511 5.511
28 C 0.104 3.896
29 H 0.053 0.947
30 H 0.057 0.943
31 H 0.061 0.939
32 H 0.071 0.929
33 H 0.094 0.906
34 H 0.126 0.874
35 H 0.117 0.883
36 H 0.068 0.932
37 H 0.062 0.938
38 H 0.022 0.978
39 H 0.033 0.967
40 H 0.267 0.733
41 H 0.088 0.912
42 H 0.082 0.918
43 H 0.138 0.862
44 H 0.167 0.833
45 H 0.186 0.814
46 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.729 -0.875 -0.902 8.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.087 4.087
3 H 0.079 0.921
4 C -0.123 4.123
5 C -0.166 4.166
6 C -0.181 4.181
7 C -0.108 4.108
8 C -0.118 4.118
9 H 0.104 0.896
10 C 0.312 3.688
11 O -0.459 6.459
12 N -0.324 5.324
13 C 0.133 3.867
14 C -0.585 4.585
15 H 0.068 0.932
16 C -0.173 4.173
17 N -0.554 5.554
18 Si 0.774 3.226
19 H -0.198 1.198
20 H -0.207 1.207
21 H -0.198 1.198
22 C 0.035 3.965
23 C -0.157 4.157
24 C -0.096 4.096
25 C -0.186 4.186
26 C -0.069 4.069
27 N -0.220 5.220
28 C -0.053 4.053
29 H 0.072 0.928
30 H 0.076 0.924
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.113 0.887
34 H 0.144 0.856
35 H 0.135 0.865
36 H 0.086 0.914
37 H 0.080 0.920
38 H 0.040 0.960
39 H 0.051 0.949
40 H 0.076 0.924
41 H 0.106 0.894
42 H 0.101 0.899
43 H 0.156 0.844
44 H 0.184 0.816
45 H 0.203 0.797
46 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -9.885 -0.404 -1.120 9.956
hybrid contribution 2.213 0.055 0.256 2.229
sum -7.672 -0.349 -0.864 7.728
Atomic orbital electron populations
1.21932 0.94194 1.01635 1.02284 1.20939 0.96944 0.98054 0.92804
0.92133 1.20566 1.01216 0.92831 0.97676 1.22209 0.99736 0.96457
0.98214 1.21998 1.02536 1.00016 0.93511 1.20283 0.99770 0.93547
0.97164 1.21306 1.01980 0.95744 0.92750 0.89623 1.20809 0.79811
0.83138 0.85080 1.90497 1.35794 1.33702 1.85869 1.48234 1.36303
1.40878 1.06952 1.19154 0.83579 0.86629 0.97304 1.21629 0.93454
0.96146 1.47299 0.93208 1.25539 1.01814 0.95135 0.94815 1.69985
1.29791 1.07072 1.48539 0.85750 0.79507 0.78312 0.78998 1.19836
1.20673 1.19814 1.20160 0.95274 0.94876 0.86147 1.21272 0.96177
0.99675 0.98607 1.21793 1.01001 0.93105 0.93698 1.22465 0.93105
1.01272 1.01718 1.23341 0.97233 0.93323 0.92968 1.67709 1.37246
1.07937 1.09070 1.22639 0.88393 0.97484 0.96753 0.92820 0.92363
0.91958 0.91056 0.88733 0.85647 0.86501 0.91387 0.92004 0.95990
0.94888 0.92359 0.89356 0.89949 0.84377 0.81559 0.79699 0.83815
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.36 8.31 71.99 0.60 -3.76 16
2 C -0.07 -2.21 2.40 -10.65 -0.03 -2.23 16
3 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16
4 C -0.09 -2.29 5.55 29.65 0.16 -2.12 16
5 C -0.15 -3.86 9.41 27.04 0.25 -3.61 16
6 C -0.16 -4.72 9.15 27.04 0.25 -4.47 16
7 C -0.07 -2.42 4.59 29.66 0.14 -2.29 16
8 C -0.10 -3.62 1.51 -11.39 -0.02 -3.64 16
9 H 0.09 3.68 6.74 -2.39 -0.02 3.66 16
10 C 0.52 21.36 6.71 87.66 0.59 21.95 16
11 O -0.58 -24.49 13.18 -3.04 -0.04 -24.53 16
12 N -0.59 -24.41 2.45 -830.48 -2.04 -26.45 16
13 C 0.25 11.73 4.81 85.63 0.41 12.14 16
14 C -0.55 -27.74 8.63 25.60 0.22 -27.51 16
15 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16
16 C 0.03 1.43 5.46 84.66 0.46 1.89 16
17 N -0.91 -48.93 13.29 21.45 0.28 -48.65 16
18 Si 0.95 41.04 29.54 68.60 2.03 43.07 16
19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
21 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16
22 C 0.16 5.74 5.57 85.63 0.48 6.22 16
23 C -0.15 -5.09 5.48 -19.77 -0.11 -5.20 16
24 C -0.07 -2.02 9.86 22.47 0.22 -1.80 16
25 C -0.17 -3.93 10.11 22.36 0.23 -3.71 16
26 C 0.09 2.19 11.18 84.69 0.95 3.14 16
27 N -0.51 -16.10 10.36 -195.84 -2.03 -18.13 16
28 C 0.10 3.49 10.86 84.67 0.92 4.41 16
29 H 0.05 1.58 5.67 -2.39 -0.01 1.56 16
30 H 0.06 2.06 5.71 -2.39 -0.01 2.04 16
31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16
32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
33 H 0.09 2.04 8.11 -2.39 -0.02 2.02 16
34 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16
35 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16
36 H 0.07 2.34 6.86 -2.39 -0.02 2.32 16
37 H 0.06 2.34 6.11 -2.38 -0.01 2.33 16
38 H 0.02 1.06 8.03 -2.39 -0.02 1.04 16
39 H 0.03 1.61 4.80 -2.39 -0.01 1.60 16
40 H 0.27 13.66 8.31 -92.71 -0.77 12.88 16
41 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16
42 H 0.08 2.98 7.32 -2.39 -0.02 2.97 16
43 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16
44 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16
45 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16
46 H 0.14 5.08 7.85 -2.91 -0.02 5.06 16
Total: -1.00 -59.29 365.79 4.90 -54.39
By element:
Atomic # 1 Polarization: 29.90 SS G_CDS: 0.97 Total: 30.87 kcal
Atomic # 6 Polarization: -16.30 SS G_CDS: 5.72 Total: -10.58 kcal
Atomic # 7 Polarization: -89.44 SS G_CDS: -3.78 Total: -93.22 kcal
Atomic # 8 Polarization: -24.49 SS G_CDS: -0.04 Total: -24.53 kcal
Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal
Total: -59.29 4.90 -54.39 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000341002937.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.284 kcal
(2) G-P(sol) polarization free energy of solvation -59.286 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.002 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds