Wall clock time and date at job start Tue Mar 31 2020 10:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46653 * 2 1 4 4 N 1.46506 * 109.46589 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.99681 * 90.00539 * 4 3 2 6 6 C 1.53004 * 109.47369 * 89.99675 * 5 4 3 7 7 N 1.46898 * 109.46850 * 180.02562 * 6 5 4 8 8 C 1.46845 * 111.00565 * 45.79157 * 7 6 5 9 9 C 1.53034 * 109.52676 * 185.84030 * 8 7 6 10 10 C 1.53126 * 109.27454 * 300.81918 * 9 8 7 11 11 C 1.53119 * 109.16048 * 57.65518 * 10 9 8 12 12 C 1.46850 * 110.99813 * 170.00223 * 7 6 5 13 13 C 1.34773 * 120.00281 * 269.99993 * 4 3 2 14 14 O 1.21277 * 120.00404 * 180.02562 * 13 4 3 15 15 C 1.50706 * 119.99786 * 0.02562 * 13 4 3 16 16 S 1.80998 * 109.47034 * 179.97438 * 15 13 4 17 17 C 1.76202 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00091 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99920 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00083 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00298 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46940 * 89.99594 * 21 19 17 23 23 H 1.48492 * 109.47632 * 210.00126 * 21 19 17 24 24 H 1.48503 * 109.46815 * 330.00324 * 21 19 17 25 25 H 1.08999 * 109.47333 * 59.99877 * 1 2 3 26 26 H 1.09002 * 109.46664 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46713 * 299.99700 * 1 2 3 28 28 H 1.08994 * 109.46572 * 240.00285 * 2 1 3 29 29 H 1.08999 * 109.47333 * 120.00122 * 2 1 3 30 30 H 1.09004 * 109.47316 * 60.00669 * 3 2 1 31 31 H 1.08999 * 109.47351 * 300.00112 * 3 2 1 32 32 H 1.09006 * 109.47054 * 329.99626 * 5 4 3 33 33 H 1.08999 * 109.46804 * 210.00034 * 5 4 3 34 34 H 1.08995 * 109.46637 * 59.99753 * 6 5 4 35 35 H 1.09001 * 109.46762 * 299.99710 * 6 5 4 36 36 H 1.08995 * 109.46315 * 65.81881 * 8 7 6 37 37 H 1.09005 * 109.45975 * 305.85394 * 8 7 6 38 38 H 1.08997 * 109.50792 * 180.88024 * 9 8 7 39 39 H 1.09006 * 109.50471 * 60.75677 * 9 8 7 40 40 H 1.08999 * 109.52028 * 177.55723 * 10 9 8 41 41 H 1.08993 * 109.52259 * 297.74866 * 10 9 8 42 42 H 1.09004 * 109.50440 * 62.28501 * 11 10 9 43 43 H 1.09003 * 109.50154 * 182.40625 * 11 10 9 44 44 H 1.09005 * 109.46186 * 54.13967 * 12 7 6 45 45 H 1.08998 * 109.46012 * 294.17361 * 12 7 6 46 46 H 1.09008 * 109.46856 * 299.99734 * 15 13 4 47 47 H 1.08991 * 109.47063 * 59.99697 * 15 13 4 48 48 H 0.96998 * 120.00239 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2369 1.4429 -1.2697 6 6 4.4917 2.8855 -1.7112 7 7 5.2250 2.8856 -2.9841 8 6 4.6362 1.9301 -3.9309 9 6 5.5080 1.8507 -5.1862 10 6 5.6016 3.2391 -5.8252 11 6 6.1727 4.2254 -4.8027 12 6 5.2816 4.2359 -3.5585 13 6 4.1794 1.4424 1.1662 14 8 5.3922 1.4428 1.1657 15 6 3.4265 1.4416 2.4717 16 16 4.6032 1.4408 3.8469 17 6 3.4838 1.4408 5.2076 18 1 2.4184 1.4408 5.0304 19 6 3.9711 1.4397 6.5072 20 7 3.1348 1.4391 7.5237 21 14 5.8138 1.4389 6.8138 22 1 6.3025 2.8388 6.8960 23 1 6.1030 0.7379 8.0905 24 1 6.5009 0.7396 5.6984 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.6474 0.9291 -2.0292 33 1 5.1893 0.9290 -1.1399 34 1 5.0810 3.3991 -0.9517 35 1 3.5391 3.3992 -1.8410 36 1 3.6344 2.2606 -4.2048 37 1 4.5792 0.9460 -3.4655 38 1 5.0624 1.1531 -5.8953 39 1 6.5062 1.5069 -4.9149 40 1 6.2568 3.1962 -6.6952 41 1 4.6083 3.5666 -6.1319 42 1 7.1813 3.9190 -4.5254 43 1 6.2019 5.2244 -5.2378 44 1 5.6934 4.9267 -2.8227 45 1 4.2768 4.5557 -3.8342 46 1 2.7995 2.3314 2.5300 47 1 2.8002 0.5515 2.5294 48 1 3.4754 1.4387 8.4319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342780704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:18 Heat of formation + Delta-G solvation = -48.247188 kcal Electronic energy + Delta-G solvation = -24464.688369 eV Core-core repulsion = 21066.150586 eV Total energy + Delta-G solvation = -3398.537783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.98273 -39.01419 -36.25497 -34.46208 -32.68149 -32.42863 -31.22225 -30.18146 -27.99065 -26.12396 -25.61076 -24.67866 -23.27326 -21.95773 -21.70905 -19.95503 -19.05328 -17.68284 -17.01163 -16.65354 -15.79882 -15.27920 -15.09983 -14.93148 -14.82408 -14.72388 -14.61553 -13.85695 -13.78689 -13.67152 -13.39231 -13.37065 -12.97903 -12.79754 -12.58899 -12.31572 -12.23560 -11.86407 -11.77370 -11.51597 -11.44344 -11.29945 -11.21210 -11.00787 -10.94996 -10.81859 -10.65472 -10.61584 -10.53045 -9.84367 -9.45675 -8.99346 -8.62147 -8.51346 -8.47297 -6.90625 -6.28097 -3.99591 2.69267 2.94395 3.14743 3.34218 3.51936 3.57002 3.79736 4.34065 4.49944 4.52056 4.58447 4.63423 4.73775 4.79638 4.87648 4.91250 5.02473 5.11012 5.11507 5.16560 5.18074 5.23693 5.27697 5.29852 5.34706 5.42059 5.50330 5.56982 5.61468 5.63324 5.66200 5.78637 5.83103 5.84700 5.85459 5.88205 5.94214 5.97223 6.02779 6.08764 6.18898 6.57515 6.86364 6.88765 7.45672 7.94967 8.42194 8.46216 9.18305 10.81099 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.003010 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.818808 B = 9299.106477 C =10532.416960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.110 3.890 4 N -0.618 5.618 5 C 0.116 3.884 6 C 0.043 3.957 7 N -0.533 5.533 8 C 0.047 3.953 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.057 3.943 13 C 0.532 3.468 14 O -0.513 6.513 15 C -0.121 4.121 16 S -0.144 6.144 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.031 0.969 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 1.695 -26.509 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C -0.014 4.014 4 N -0.354 5.354 5 C -0.007 4.007 6 C -0.086 4.086 7 N -0.259 5.259 8 C -0.081 4.081 9 C -0.155 4.155 10 C -0.159 4.159 11 C -0.155 4.155 12 C -0.071 4.071 13 C 0.319 3.681 14 O -0.387 6.387 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.049 0.951 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.036 1.549 -26.204 26.250 hybrid contribution -1.770 0.344 0.265 1.823 sum -1.734 1.893 -25.938 26.065 Atomic orbital electron populations 1.21702 0.95045 1.02064 1.01961 1.21976 0.96231 0.97150 1.02950 1.21669 0.79326 0.97114 1.03283 1.47940 1.06509 1.75423 1.05508 1.21509 0.98399 0.96090 0.84684 1.22489 0.96535 0.97971 0.91595 1.61923 1.53124 1.07235 1.03593 1.22235 0.95675 0.97061 0.93142 1.21596 1.01064 0.96945 0.95940 1.21581 1.00824 0.95469 0.98030 1.21587 1.00061 0.99084 0.94758 1.22077 0.98363 0.89981 0.96697 1.20327 0.87925 0.75168 0.84663 1.90706 1.13628 1.47540 1.86778 1.23335 1.03032 1.05535 0.95212 1.84803 1.11974 1.97399 0.97545 1.22303 0.94854 1.58686 0.90885 0.89430 1.24709 0.98522 0.93194 0.94878 1.69936 1.34796 1.48158 0.98862 0.86739 0.85398 0.79938 0.79819 1.19221 1.19974 1.15881 0.92841 0.92410 0.92177 0.91861 0.91096 0.89784 0.90785 0.90749 0.88939 0.89859 0.94933 0.95102 0.90127 0.91658 0.90925 0.91884 0.92463 0.90926 0.91640 0.90645 0.95095 0.88686 0.88531 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.14 -1.43 6.26 -26.73 -0.17 -1.60 16 3 C 0.11 1.15 5.21 -4.04 -0.02 1.13 16 4 N -0.62 -8.33 2.47 -173.68 -0.43 -8.76 16 5 C 0.12 1.38 4.66 -4.04 -0.02 1.36 16 6 C 0.04 0.50 5.60 -3.82 -0.02 0.47 16 7 N -0.53 -5.60 4.81 -234.67 -1.13 -6.72 16 8 C 0.05 0.40 4.85 -3.84 -0.02 0.38 16 9 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 10 C -0.12 -0.85 6.00 -26.60 -0.16 -1.01 16 11 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 12 C 0.06 0.52 5.42 -3.83 -0.02 0.50 16 13 C 0.53 9.66 7.69 -10.98 -0.08 9.58 16 14 O -0.51 -11.21 15.44 5.56 0.09 -11.12 16 15 C -0.12 -2.37 4.71 36.01 0.17 -2.20 16 16 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 17 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 21 Si 0.86 21.91 27.74 -169.99 -4.72 17.19 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.84 7.22 -51.93 -0.37 0.47 16 30 H 0.08 0.92 6.44 -51.93 -0.33 0.59 16 31 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.07 0.70 6.14 -51.93 -0.32 0.38 16 33 H 0.09 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.68 5.81 -51.93 -0.30 0.38 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 45 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.09 1.74 7.40 -51.91 -0.38 1.36 16 47 H 0.10 1.78 7.18 -51.92 -0.37 1.41 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -32.87 386.04 -10.48 -43.35 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.81 Total: -1.91 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.08 Total: -6.35 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.78 Total: -41.31 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.19 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.87 -10.48 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342780704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.897 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds