Wall clock time and date at job start Tue Mar 31 2020 12:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.06409 * 2 1 4 4 C 1.53990 * 109.91986 * 121.21105 * 2 1 3 5 5 H 1.09000 * 110.31087 * 239.59001 * 4 2 1 6 6 C 1.50706 * 110.31105 * 1.66011 * 4 2 1 7 7 O 1.21284 * 120.00166 * 88.86665 * 6 4 2 8 8 N 1.34775 * 119.99553 * 268.87662 * 6 4 2 9 9 C 1.37098 * 119.99673 * 175.23428 * 8 6 4 10 10 H 1.08004 * 119.99455 * 222.93559 * 9 8 6 11 11 C 1.38950 * 120.00410 * 42.92463 * 9 8 6 12 12 N 1.31408 * 120.00487 * 210.05381 * 11 9 8 13 13 Si 1.86805 * 119.99565 * 30.05910 * 11 9 8 14 14 H 1.48501 * 109.47187 * 93.92251 * 13 11 9 15 15 H 1.48506 * 109.46867 * 213.91797 * 13 11 9 16 16 H 1.48498 * 109.47231 * 333.92027 * 13 11 9 17 17 C 1.46499 * 120.00527 * 355.22315 * 8 6 4 18 18 C 1.53000 * 117.50241 * 184.06381 * 17 8 6 19 19 C 1.52998 * 117.49632 * 115.43907 * 17 8 6 20 20 C 1.54599 * 105.14186 * 120.57562 * 4 2 1 21 21 C 1.54932 * 102.91953 * 21.95750 * 20 4 2 22 22 N 1.47904 * 109.91126 * 238.79765 * 2 1 3 23 23 C 1.39676 * 111.00042 * 94.80540 * 22 2 1 24 24 C 1.38920 * 120.07333 * 57.45849 * 23 22 2 25 25 C 1.38106 * 119.92267 * 180.02562 * 24 23 22 26 26 C 1.38285 * 120.07416 * 0.02562 * 25 24 23 27 27 C 1.38291 * 120.15316 * 0.26744 * 26 25 24 28 28 C 1.38103 * 120.07010 * 359.45475 * 27 26 25 29 29 H 1.09002 * 109.46852 * 176.16409 * 1 2 3 30 30 H 1.09002 * 109.46859 * 296.16110 * 1 2 3 31 31 H 1.08997 * 109.47471 * 56.15903 * 1 2 3 32 32 H 0.96994 * 120.00208 * 180.02562 * 12 11 9 33 33 H 1.09006 * 115.54665 * 329.77539 * 17 8 6 34 34 H 1.08999 * 117.49695 * 359.97438 * 18 17 8 35 35 H 1.08997 * 117.49902 * 145.02282 * 18 17 8 36 36 H 1.09003 * 117.49808 * 214.98279 * 19 17 8 37 37 H 1.09000 * 117.50300 * 0.02562 * 19 17 8 38 38 H 1.08999 * 110.72402 * 140.31737 * 20 4 2 39 39 H 1.09004 * 110.72498 * 263.42053 * 20 4 2 40 40 H 1.09006 * 110.66607 * 204.15251 * 21 20 4 41 41 H 1.08991 * 110.66917 * 81.02180 * 21 20 4 42 42 H 1.07995 * 120.03546 * 0.05255 * 24 23 22 43 43 H 1.08000 * 119.96285 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.92316 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.96579 * 179.70386 * 27 26 25 46 46 H 1.08003 * 120.03857 * 180.27740 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0547 -0.7502 1.2382 5 1 2.6700 -0.0892 1.8485 6 6 0.9047 -1.2895 2.0493 7 8 0.4571 -2.3909 1.8092 8 7 0.3735 -0.5478 3.0413 9 6 -0.7337 -0.9955 3.7145 10 1 -1.5378 -0.3126 3.9458 11 6 -0.8215 -2.3279 4.0989 12 7 -1.9961 -2.9108 4.1858 13 14 0.7302 -3.2906 4.4925 14 1 0.9927 -3.2311 5.9529 15 1 0.5531 -4.7058 4.0787 16 1 1.8784 -2.7003 3.7587 17 6 0.9793 0.7368 3.4005 18 6 0.3889 1.4866 4.5964 19 6 0.1445 1.9990 3.1755 20 6 2.9059 -1.9118 0.6760 21 6 3.2681 -1.4185 -0.7474 22 7 2.0337 -0.7204 -1.1895 23 6 2.3069 0.1665 -2.2334 24 6 3.2052 1.2091 -2.0440 25 6 3.4726 2.0845 -3.0781 26 6 2.8469 1.9244 -4.3009 27 6 1.9476 0.8912 -4.4910 28 6 1.6799 0.0088 -3.4629 29 1 -0.3633 -1.0254 -0.0688 30 1 -0.3633 0.4531 0.9224 31 1 -0.3634 0.5723 -0.8535 32 1 -2.0574 -3.8407 4.4545 33 1 2.0552 0.8099 3.2415 34 1 -0.4507 1.0244 5.1156 35 1 1.0763 2.0532 5.2244 36 1 0.6712 2.9028 2.8689 37 1 -0.8557 1.8737 2.7607 38 1 3.8053 -2.0559 1.2747 39 1 2.3224 -2.8314 0.6316 40 1 3.4887 -2.2615 -1.4022 41 1 4.1096 -0.7268 -0.7123 42 1 3.6942 1.3346 -1.0893 43 1 4.1706 2.8955 -2.9314 44 1 3.0575 2.6106 -5.1078 45 1 1.4570 0.7718 -5.4457 46 1 0.9808 -0.8006 -3.6133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352568647.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:27 Heat of formation + Delta-G solvation = 56.470679 kcal Electronic energy + Delta-G solvation = -27503.465537 eV Core-core repulsion = 23974.024710 eV Total energy + Delta-G solvation = -3529.440827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58363 -39.12842 -37.46524 -36.20392 -33.00209 -32.42250 -31.45948 -30.98213 -30.87201 -28.51383 -25.97665 -24.61153 -23.00686 -22.19854 -22.02550 -21.63581 -20.85087 -20.14982 -18.81845 -17.58397 -16.70629 -16.12395 -15.91095 -15.36528 -15.04456 -14.82993 -14.59317 -14.36513 -13.83716 -13.63131 -13.41645 -13.40023 -12.97176 -12.75512 -12.59344 -12.26070 -12.02807 -11.61574 -11.55756 -11.43326 -11.30419 -11.19890 -11.05469 -10.96854 -10.79986 -10.48388 -10.43429 -10.28073 -10.17567 -9.85140 -9.68859 -8.99086 -8.67479 -8.63500 -8.44260 -8.22037 -7.42170 -6.24456 -3.88880 1.22929 1.34739 3.27416 3.51398 3.51656 3.67607 3.84526 3.94104 4.33237 4.49007 4.59816 4.81638 4.87163 4.88515 5.01597 5.05808 5.11516 5.27135 5.32537 5.37991 5.40348 5.47872 5.57761 5.60825 5.62533 5.69639 5.77118 5.80730 5.95180 5.96435 6.03373 6.12948 6.14544 6.29153 6.32334 6.40426 6.43032 6.44410 6.52348 6.59576 6.63351 6.80870 6.85599 6.92933 7.04745 7.53657 7.85595 8.05429 8.84118 9.01076 9.48030 9.93487 10.82835 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.004482 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.393462 B = 6245.514069 C = 6788.808597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.095 3.905 3 H 0.056 0.944 4 C -0.118 4.118 5 H 0.083 0.917 6 C 0.493 3.507 7 O -0.543 6.543 8 N -0.436 5.436 9 C -0.362 4.362 10 H 0.091 0.909 11 C 0.108 3.892 12 N -0.847 5.847 13 Si 0.909 3.091 14 H -0.301 1.301 15 H -0.289 1.289 16 H -0.274 1.274 17 C 0.062 3.938 18 C -0.172 4.172 19 C -0.199 4.199 20 C -0.113 4.113 21 C 0.045 3.955 22 N -0.479 5.479 23 C 0.094 3.906 24 C -0.152 4.152 25 C -0.113 4.113 26 C -0.130 4.130 27 C -0.116 4.116 28 C -0.095 4.095 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.271 0.729 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 10.299 -11.372 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.012 4.012 3 H 0.074 0.926 4 C -0.140 4.140 5 H 0.101 0.899 6 C 0.281 3.719 7 O -0.423 6.423 8 N -0.157 5.157 9 C -0.487 4.487 10 H 0.109 0.891 11 C -0.103 4.103 12 N -0.480 5.480 13 Si 0.739 3.261 14 H -0.229 1.229 15 H -0.215 1.215 16 H -0.199 1.199 17 C -0.044 4.044 18 C -0.210 4.210 19 C -0.238 4.238 20 C -0.152 4.152 21 C -0.081 4.081 22 N -0.201 5.201 23 C 0.000 4.000 24 C -0.172 4.172 25 C -0.132 4.132 26 C -0.148 4.148 27 C -0.134 4.134 28 C -0.114 4.114 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.958 9.175 -11.626 18.423 hybrid contribution 1.413 0.251 0.596 1.554 sum 12.371 9.426 -11.030 19.067 Atomic orbital electron populations 1.21899 0.92692 1.03893 1.01551 1.22254 0.97435 0.94628 0.86895 0.92617 1.22278 0.97287 0.98011 0.96449 0.89924 1.19564 0.85220 0.86775 0.80301 1.90460 1.62352 1.20238 1.69287 1.43135 1.26951 1.16182 1.29404 1.18498 0.95002 0.95255 1.39971 0.89145 1.25182 0.96381 0.96356 0.92371 1.69877 1.25010 1.12272 1.40812 0.86280 0.85050 0.79485 0.75311 1.22942 1.21516 1.19876 1.21799 0.94654 0.85067 1.02844 1.23140 1.04278 1.02630 0.90943 1.23278 1.02456 0.97661 1.00368 1.22521 0.99176 0.99721 0.93738 1.23287 0.90158 0.98030 0.96672 1.62440 1.26761 1.25078 1.05855 1.19125 0.95352 0.92452 0.93102 1.21694 0.99574 0.96485 0.99478 1.20988 0.99927 0.98994 0.93259 1.21124 0.97799 0.98588 0.97325 1.21108 0.98249 0.95171 0.98900 1.21098 0.99247 0.99353 0.91697 0.90532 0.90703 0.93761 0.91869 0.87837 0.86986 0.89604 0.89706 0.88678 0.91262 0.88423 0.89855 0.93607 0.86341 0.86360 0.86321 0.85943 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.37 37.16 0.31 -2.37 16 2 C 0.09 1.57 2.89 -66.64 -0.19 1.37 16 3 H 0.06 0.84 6.52 -51.93 -0.34 0.50 16 4 C -0.12 -2.12 2.82 -90.41 -0.26 -2.38 16 5 H 0.08 1.32 6.05 -51.93 -0.31 1.00 16 6 C 0.49 11.39 2.60 -10.98 -0.03 11.37 16 7 O -0.54 -14.79 11.52 5.55 0.06 -14.73 16 8 N -0.44 -10.10 1.80 -107.73 -0.19 -10.30 16 9 C -0.36 -9.85 8.34 -14.93 -0.12 -9.97 16 10 H 0.09 2.57 7.39 -52.48 -0.39 2.19 16 11 C 0.11 3.12 4.51 -17.47 -0.08 3.04 16 12 N -0.85 -25.55 13.96 55.50 0.77 -24.77 16 13 Si 0.91 23.96 26.01 -169.99 -4.42 19.54 16 14 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 15 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 16 H -0.27 -7.06 5.92 56.52 0.33 -6.73 16 17 C 0.06 1.14 5.68 -67.93 -0.39 0.75 16 18 C -0.17 -2.90 9.80 -26.73 -0.26 -3.16 16 19 C -0.20 -3.19 9.83 -26.73 -0.26 -3.45 16 20 C -0.11 -1.89 6.55 -24.87 -0.16 -2.06 16 21 C 0.04 0.63 6.42 -1.90 -0.01 0.62 16 22 N -0.48 -7.46 4.91 -159.72 -0.78 -8.25 16 23 C 0.09 1.29 4.85 -83.78 -0.41 0.89 16 24 C -0.15 -1.84 7.89 -39.38 -0.31 -2.15 16 25 C -0.11 -1.18 10.04 -39.61 -0.40 -1.57 16 26 C -0.13 -1.29 10.04 -39.54 -0.40 -1.68 16 27 C -0.12 -1.22 10.04 -39.61 -0.40 -1.62 16 28 C -0.10 -1.21 9.97 -39.38 -0.39 -1.60 16 29 H 0.08 1.70 7.19 -51.93 -0.37 1.32 16 30 H 0.07 1.50 6.14 -51.93 -0.32 1.18 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.10 1.65 6.33 -51.93 -0.33 1.32 16 34 H 0.11 2.16 6.71 -51.93 -0.35 1.81 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.93 6.85 -51.93 -0.36 1.57 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.57 6.81 -51.93 -0.35 0.22 16 42 H 0.12 1.35 7.05 -52.49 -0.37 0.98 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -32.05 355.31 -9.88 -41.93 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.92 Total: 5.20 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -3.76 Total: -13.98 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.20 Total: -43.31 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.06 Total: -14.73 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.42 Total: 19.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.05 -9.88 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352568647.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.396 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds