Wall clock time and date at job start Tue Mar 31 2020 12:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.06409 * 2 1 4 4 C 1.53990 * 109.91986 * 121.21105 * 2 1 3 5 5 H 1.09000 * 110.31087 * 239.59001 * 4 2 1 6 6 C 1.50706 * 110.31105 * 1.66011 * 4 2 1 7 7 O 1.21284 * 120.00166 * 88.86665 * 6 4 2 8 8 N 1.34775 * 119.99553 * 268.87662 * 6 4 2 9 9 C 1.37098 * 119.99673 * 175.23428 * 8 6 4 10 10 H 1.08004 * 119.99455 * 222.93559 * 9 8 6 11 11 C 1.38950 * 120.00410 * 42.92463 * 9 8 6 12 12 N 1.31408 * 120.00487 * 210.05381 * 11 9 8 13 13 Si 1.86805 * 119.99565 * 30.05910 * 11 9 8 14 14 H 1.48501 * 109.47187 * 93.92251 * 13 11 9 15 15 H 1.48506 * 109.46867 * 213.91797 * 13 11 9 16 16 H 1.48498 * 109.47231 * 333.92027 * 13 11 9 17 17 C 1.46499 * 120.00527 * 355.22315 * 8 6 4 18 18 C 1.53000 * 117.50241 * 184.06381 * 17 8 6 19 19 C 1.52998 * 117.49632 * 115.43907 * 17 8 6 20 20 C 1.54599 * 105.14186 * 120.57562 * 4 2 1 21 21 C 1.54932 * 102.91953 * 21.95750 * 20 4 2 22 22 N 1.47904 * 109.91126 * 238.79765 * 2 1 3 23 23 C 1.39676 * 111.00042 * 94.80540 * 22 2 1 24 24 C 1.38920 * 120.07333 * 57.45849 * 23 22 2 25 25 C 1.38106 * 119.92267 * 180.02562 * 24 23 22 26 26 C 1.38285 * 120.07416 * 0.02562 * 25 24 23 27 27 C 1.38291 * 120.15316 * 0.26744 * 26 25 24 28 28 C 1.38103 * 120.07010 * 359.45475 * 27 26 25 29 29 H 1.09002 * 109.46852 * 176.16409 * 1 2 3 30 30 H 1.09002 * 109.46859 * 296.16110 * 1 2 3 31 31 H 1.08997 * 109.47471 * 56.15903 * 1 2 3 32 32 H 0.96994 * 120.00208 * 180.02562 * 12 11 9 33 33 H 1.09006 * 115.54665 * 329.77539 * 17 8 6 34 34 H 1.08999 * 117.49695 * 359.97438 * 18 17 8 35 35 H 1.08997 * 117.49902 * 145.02282 * 18 17 8 36 36 H 1.09003 * 117.49808 * 214.98279 * 19 17 8 37 37 H 1.09000 * 117.50300 * 0.02562 * 19 17 8 38 38 H 1.08999 * 110.72402 * 140.31737 * 20 4 2 39 39 H 1.09004 * 110.72498 * 263.42053 * 20 4 2 40 40 H 1.09006 * 110.66607 * 204.15251 * 21 20 4 41 41 H 1.08991 * 110.66917 * 81.02180 * 21 20 4 42 42 H 1.07995 * 120.03546 * 0.05255 * 24 23 22 43 43 H 1.08000 * 119.96285 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.92316 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.96579 * 179.70386 * 27 26 25 46 46 H 1.08003 * 120.03857 * 180.27740 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0547 -0.7502 1.2382 5 1 2.6700 -0.0892 1.8485 6 6 0.9047 -1.2895 2.0493 7 8 0.4571 -2.3909 1.8092 8 7 0.3735 -0.5478 3.0413 9 6 -0.7337 -0.9955 3.7145 10 1 -1.5378 -0.3126 3.9458 11 6 -0.8215 -2.3279 4.0989 12 7 -1.9961 -2.9108 4.1858 13 14 0.7302 -3.2906 4.4925 14 1 0.9927 -3.2311 5.9529 15 1 0.5531 -4.7058 4.0787 16 1 1.8784 -2.7003 3.7587 17 6 0.9793 0.7368 3.4005 18 6 0.3889 1.4866 4.5964 19 6 0.1445 1.9990 3.1755 20 6 2.9059 -1.9118 0.6760 21 6 3.2681 -1.4185 -0.7474 22 7 2.0337 -0.7204 -1.1895 23 6 2.3069 0.1665 -2.2334 24 6 3.2052 1.2091 -2.0440 25 6 3.4726 2.0845 -3.0781 26 6 2.8469 1.9244 -4.3009 27 6 1.9476 0.8912 -4.4910 28 6 1.6799 0.0088 -3.4629 29 1 -0.3633 -1.0254 -0.0688 30 1 -0.3633 0.4531 0.9224 31 1 -0.3634 0.5723 -0.8535 32 1 -2.0574 -3.8407 4.4545 33 1 2.0552 0.8099 3.2415 34 1 -0.4507 1.0244 5.1156 35 1 1.0763 2.0532 5.2244 36 1 0.6712 2.9028 2.8689 37 1 -0.8557 1.8737 2.7607 38 1 3.8053 -2.0559 1.2747 39 1 2.3224 -2.8314 0.6316 40 1 3.4887 -2.2615 -1.4022 41 1 4.1096 -0.7268 -0.7123 42 1 3.6942 1.3346 -1.0893 43 1 4.1706 2.8955 -2.9314 44 1 3.0575 2.6106 -5.1078 45 1 1.4570 0.7718 -5.4457 46 1 0.9808 -0.8006 -3.6133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352568647.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:26 Heat of formation + Delta-G solvation = 37.329584 kcal Electronic energy + Delta-G solvation = -27504.295557 eV Core-core repulsion = 23974.024710 eV Total energy + Delta-G solvation = -3530.270847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89077 -40.47937 -38.64923 -37.77932 -34.91840 -33.77512 -33.19045 -32.33293 -31.78606 -29.62060 -27.56208 -26.31476 -24.00594 -23.57664 -23.05040 -22.98393 -22.33002 -21.37908 -20.55080 -18.67463 -18.28695 -17.80773 -17.08656 -16.86823 -16.46320 -16.17915 -15.78694 -15.49430 -15.38647 -15.09160 -15.01881 -14.59991 -14.34638 -14.12871 -13.99476 -13.65206 -13.34453 -13.23179 -13.02494 -12.86864 -12.70214 -12.55840 -12.42801 -12.21842 -12.12863 -12.07352 -12.01548 -11.84190 -11.73195 -11.51822 -11.21113 -10.74409 -10.13764 -9.80788 -9.56421 -9.47658 -9.29979 -8.45653 -6.06306 0.38557 0.52509 1.21928 1.33400 1.37936 2.01675 2.45309 2.61314 2.82071 2.86900 2.98859 3.23892 3.53506 3.71791 3.85431 4.00180 4.07873 4.13647 4.16090 4.19435 4.28736 4.30905 4.35036 4.35949 4.48730 4.59448 4.60501 4.67154 4.73441 4.76656 4.89333 4.90434 4.97200 5.03044 5.04822 5.18635 5.22925 5.26383 5.37157 5.49172 5.52891 5.63437 5.65163 5.72205 5.78046 5.94430 5.98820 6.53436 6.85558 7.01857 7.44436 8.03807 8.65828 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.004482 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.393462 B = 6245.514069 C = 6788.808597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.106 3.894 3 H 0.084 0.916 4 C -0.113 4.113 5 H 0.116 0.884 6 C 0.487 3.513 7 O -0.594 6.594 8 N -0.449 5.449 9 C -0.349 4.349 10 H 0.063 0.937 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.956 3.044 14 H -0.286 1.286 15 H -0.308 1.308 16 H -0.264 1.264 17 C 0.039 3.961 18 C -0.170 4.170 19 C -0.177 4.177 20 C -0.115 4.115 21 C 0.055 3.945 22 N -0.499 5.499 23 C 0.070 3.930 24 C -0.157 4.157 25 C -0.112 4.112 26 C -0.127 4.127 27 C -0.117 4.117 28 C -0.116 4.116 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.270 0.730 33 H 0.142 0.858 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.130 0.870 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.787 13.871 -12.735 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.001 4.001 3 H 0.102 0.898 4 C -0.135 4.135 5 H 0.134 0.866 6 C 0.278 3.722 7 O -0.478 6.478 8 N -0.169 5.169 9 C -0.475 4.475 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.533 5.533 13 Si 0.785 3.215 14 H -0.214 1.214 15 H -0.236 1.236 16 H -0.188 1.188 17 C -0.065 4.065 18 C -0.208 4.208 19 C -0.216 4.216 20 C -0.154 4.154 21 C -0.071 4.071 22 N -0.222 5.222 23 C -0.024 4.024 24 C -0.177 4.177 25 C -0.130 4.130 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.135 4.135 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.160 0.840 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.148 0.852 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.024 12.795 -12.981 23.621 hybrid contribution 0.082 -0.746 0.871 1.150 sum 15.106 12.049 -12.110 22.804 Atomic orbital electron populations 1.21736 0.95223 1.00832 1.01182 1.22119 0.95251 0.95888 0.86868 0.89834 1.22319 0.95506 0.99088 0.96568 0.86565 1.20517 0.85820 0.85946 0.79920 1.90437 1.64215 1.22772 1.70358 1.43250 1.26344 1.18029 1.29305 1.18364 0.96108 0.94487 1.38554 0.91907 1.25803 0.98148 0.97582 0.93056 1.69970 1.26663 1.12596 1.44033 0.85538 0.82896 0.77342 0.75726 1.21425 1.23553 1.18825 1.22184 0.96556 0.83055 1.04699 1.23177 1.03731 1.02456 0.91416 1.23284 1.01044 0.97937 0.99324 1.22513 0.99226 0.97586 0.96027 1.23255 0.90459 0.98598 0.94752 1.62284 1.27978 1.26008 1.05897 1.19176 0.97071 0.93407 0.92698 1.21799 0.99175 0.96144 1.00564 1.21347 0.99829 0.99048 0.92780 1.21517 0.96586 0.98261 0.98102 1.21367 0.98342 0.94775 0.99068 1.21174 0.99747 1.00021 0.92569 0.95115 0.92310 0.92509 0.92072 0.84041 0.90543 0.85578 0.85261 0.91435 0.88890 0.92434 0.89536 0.90729 0.85232 0.83638 0.83466 0.84020 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.37 71.98 0.60 -4.42 16 2 C 0.11 3.29 2.89 45.06 0.13 3.42 16 3 H 0.08 2.17 6.52 -2.39 -0.02 2.15 16 4 C -0.11 -3.82 2.82 -10.66 -0.03 -3.85 16 5 H 0.12 3.14 6.05 -2.39 -0.01 3.13 16 6 C 0.49 22.65 2.60 87.66 0.23 22.87 16 7 O -0.59 -33.74 11.52 -3.04 -0.04 -33.78 16 8 N -0.45 -20.83 1.80 -613.13 -1.10 -21.93 16 9 C -0.35 -19.74 8.34 84.04 0.70 -19.04 16 10 H 0.06 3.81 7.39 -2.91 -0.02 3.79 16 11 C 0.06 3.61 4.51 84.93 0.38 4.00 16 12 N -0.90 -57.30 13.96 21.66 0.30 -57.00 16 13 Si 0.96 50.88 26.01 68.60 1.78 52.66 16 14 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 15 H -0.31 -17.18 7.11 99.48 0.71 -16.47 16 16 H -0.26 -13.39 5.92 99.48 0.59 -12.80 16 17 C 0.04 1.33 5.68 44.99 0.26 1.59 16 18 C -0.17 -5.35 9.80 30.60 0.30 -5.05 16 19 C -0.18 -5.20 9.83 30.60 0.30 -4.90 16 20 C -0.12 -3.67 6.55 31.80 0.21 -3.46 16 21 C 0.05 1.42 6.42 86.65 0.56 1.98 16 22 N -0.50 -14.83 4.91 -659.23 -3.24 -18.07 16 23 C 0.07 1.77 4.85 38.22 0.19 1.96 16 24 C -0.16 -3.14 7.89 22.40 0.18 -2.97 16 25 C -0.11 -1.79 10.04 22.25 0.22 -1.57 16 26 C -0.13 -1.96 10.04 22.29 0.22 -1.74 16 27 C -0.12 -2.15 10.04 22.25 0.22 -1.93 16 28 C -0.12 -2.81 9.97 22.40 0.22 -2.59 16 29 H 0.03 1.42 7.19 -2.39 -0.02 1.40 16 30 H 0.06 2.38 6.14 -2.39 -0.01 2.37 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 33 H 0.14 3.75 6.33 -2.38 -0.02 3.74 16 34 H 0.08 2.98 6.71 -2.39 -0.02 2.96 16 35 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.32 6.85 -2.38 -0.02 2.30 16 40 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 41 H 0.07 1.52 6.81 -2.39 -0.02 1.51 16 42 H 0.13 2.26 7.05 -2.91 -0.02 2.24 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 46 H 0.11 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -76.64 355.31 3.46 -73.18 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.85 Total: 20.63 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 4.89 Total: -15.68 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.03 Total: -97.00 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.04 Total: -33.78 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 1.78 Total: 52.66 kcal Total: -76.64 3.46 -73.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352568647.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.506 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds