Wall clock time and date at job start Tue Mar 31 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.03710 * 2 1 4 4 C 1.44332 * 109.09288 * 119.05488 * 2 1 3 5 5 C 1.53492 * 112.94816 * 179.87016 * 4 2 1 6 6 S 1.78693 * 107.06942 * 277.78160 * 5 4 2 7 7 C 1.83147 * 105.76755 * 92.55916 * 6 5 4 8 8 C 1.56688 * 108.04186 * 321.71752 * 7 6 5 9 9 N 1.42781 * 113.65944 * 321.09003 * 8 7 6 10 10 C 1.34779 * 121.56451 * 284.08873 * 9 8 7 11 11 O 1.21585 * 119.99862 * 174.48514 * 10 9 8 12 12 N 1.34773 * 120.00041 * 354.48539 * 10 9 8 13 13 C 1.46502 * 120.00162 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47441 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47089 * 300.00272 * 14 13 12 16 16 C 1.53004 * 109.46931 * 60.00021 * 14 13 12 17 17 C 1.53001 * 109.47077 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46622 * 180.02562 * 17 14 13 19 19 H 1.07995 * 120.00594 * 359.97438 * 18 17 14 20 20 C 1.37883 * 119.99750 * 180.02562 * 18 17 14 21 21 N 1.31514 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00168 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47011 * 89.99774 * 22 20 18 24 24 H 1.48502 * 109.46987 * 209.99995 * 22 20 18 25 25 H 1.48494 * 109.47052 * 329.99881 * 22 20 18 26 26 H 1.08994 * 109.46755 * 311.24485 * 1 2 3 27 27 H 1.09003 * 109.46687 * 71.24181 * 1 2 3 28 28 H 1.09000 * 109.47257 * 191.24124 * 1 2 3 29 29 H 1.08997 * 108.78895 * 58.97040 * 4 2 1 30 30 H 1.09001 * 108.78594 * 300.75912 * 4 2 1 31 31 H 1.08994 * 109.93466 * 37.17641 * 5 4 2 32 32 H 1.09004 * 109.92966 * 158.31177 * 5 4 2 33 33 H 1.09001 * 109.74755 * 81.36141 * 7 6 5 34 34 H 1.09008 * 109.74220 * 202.03305 * 7 6 5 35 35 H 1.08999 * 108.64757 * 82.17123 * 8 7 6 36 36 H 1.08998 * 108.64408 * 200.00945 * 8 7 6 37 37 H 0.97001 * 120.00298 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47155 * 300.00148 * 13 12 10 39 39 H 1.09002 * 109.46755 * 59.99942 * 13 12 10 40 40 H 1.08999 * 109.47372 * 59.99881 * 15 14 13 41 41 H 1.09000 * 109.46879 * 179.97438 * 15 14 13 42 42 H 1.08999 * 109.46848 * 299.99529 * 15 14 13 43 43 H 1.09000 * 109.47073 * 60.00185 * 16 14 13 44 44 H 1.09000 * 109.47208 * 179.97438 * 16 14 13 45 45 H 1.09000 * 109.47348 * 300.00447 * 16 14 13 46 46 H 1.09000 * 109.47439 * 300.00129 * 17 14 13 47 47 H 1.09002 * 109.46834 * 60.00146 * 17 14 13 48 48 H 0.97003 * 120.00276 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8855 1.0303 0.0000 4 6 2.0021 -0.6624 1.1923 5 6 3.5336 -0.7153 1.2809 6 16 4.0688 -2.1016 0.2886 7 6 4.4106 -1.4193 -1.3763 8 6 3.3240 -0.3345 -1.6887 9 7 2.0174 -0.6838 -1.2309 10 6 1.2608 -1.5899 -1.8813 11 8 0.1950 -1.9405 -1.4127 12 7 1.6855 -2.1074 -3.0510 13 6 0.8629 -3.0919 -3.7582 14 6 1.5688 -3.5140 -5.0483 15 6 1.7771 -2.2885 -5.9402 16 6 2.9257 -4.1336 -4.7079 17 6 0.7098 -4.5427 -5.7865 18 6 1.4055 -4.9589 -7.0569 19 1 2.3641 -4.5321 -7.3124 20 6 0.8176 -5.8838 -7.8936 21 7 -0.3500 -6.4031 -7.5827 22 14 1.6795 -6.3992 -9.4687 23 1 2.5517 -7.5697 -9.1954 24 1 0.6660 -6.7649 -10.4906 25 1 2.5059 -5.2729 -9.9720 26 1 -0.3632 0.6775 0.7727 27 1 -0.3633 0.3305 -0.9731 28 1 -0.3634 -1.0079 0.2003 29 1 1.6143 -1.6809 1.2050 30 1 1.6182 -0.1321 2.0638 31 1 3.9606 0.2083 0.8903 32 1 3.8411 -0.8576 2.3170 33 1 5.4008 -0.9639 -1.3916 34 1 4.3604 -2.2163 -2.1183 35 1 3.6202 0.6018 -1.2158 36 1 3.2857 -0.1800 -2.7670 37 1 2.5360 -1.8280 -3.4246 38 1 0.7141 -3.9649 -3.1226 39 1 -0.1037 -2.6503 -4.0011 40 1 2.3892 -1.5560 -5.4140 41 1 2.2804 -2.5892 -6.8590 42 1 0.8104 -1.8471 -6.1827 43 1 2.7773 -5.0067 -4.0725 44 1 3.4284 -4.4348 -5.6269 45 1 3.5378 -3.4012 -4.1816 46 1 0.5618 -5.4158 -5.1510 47 1 -0.2571 -4.1017 -6.0290 48 1 -0.7635 -7.0541 -8.1711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358677106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:39 Heat of formation + Delta-G solvation = -31.610943 kcal Electronic energy + Delta-G solvation = -25804.531989 eV Core-core repulsion = 22406.715607 eV Total energy + Delta-G solvation = -3397.816382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64107 -37.91703 -36.55147 -34.83627 -33.12103 -31.89714 -31.09818 -29.17287 -27.07248 -26.50513 -26.14436 -24.47184 -23.91225 -22.86193 -21.65790 -19.79205 -18.30112 -17.47768 -16.93359 -16.39393 -16.09516 -15.63444 -15.19233 -14.90992 -14.50522 -14.46721 -14.23674 -13.77849 -13.66628 -13.38725 -13.24903 -12.96744 -12.71119 -12.38471 -12.18617 -12.05318 -12.01115 -11.93228 -11.56489 -11.40782 -11.12899 -11.04683 -10.99915 -10.84093 -10.62472 -10.37514 -10.23791 -9.92594 -9.85584 -9.46685 -9.15819 -8.91398 -8.89549 -8.47935 -8.34454 -7.71248 -5.98513 -3.99753 1.44697 2.43559 2.65569 3.31669 3.38678 3.39633 3.40255 4.06089 4.33388 4.39745 4.46081 4.49657 4.68795 4.85979 4.99379 5.05887 5.19200 5.26409 5.36929 5.37946 5.42191 5.49960 5.53342 5.64748 5.66883 5.77066 5.89544 6.10442 6.18393 6.20076 6.28331 6.32732 6.44085 6.55306 6.63775 6.65968 6.86683 7.04418 7.08416 7.09080 7.17079 7.66260 7.78869 8.00231 8.17206 8.42146 8.83804 9.05058 9.63227 11.12934 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.003202 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.046865 B = 8742.021948 C = 9264.639509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 H 0.072 0.928 4 C -0.137 4.137 5 C -0.092 4.092 6 S -0.246 6.246 7 C -0.107 4.107 8 C 0.105 3.895 9 N -0.621 5.621 10 C 0.715 3.285 11 O -0.581 6.581 12 N -0.735 5.735 13 C 0.147 3.853 14 C -0.072 4.072 15 C -0.125 4.125 16 C -0.125 4.125 17 C 0.037 3.963 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.391 0.609 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.025 0.975 46 H 0.019 0.981 47 H 0.018 0.982 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.380 16.183 16.206 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.064 3.936 3 H 0.090 0.910 4 C -0.177 4.177 5 C -0.241 4.241 6 S -0.020 6.020 7 C -0.258 4.258 8 C -0.024 4.024 9 N -0.359 5.359 10 C 0.417 3.583 11 O -0.459 6.459 12 N -0.391 5.391 13 C 0.023 3.977 14 C -0.072 4.072 15 C -0.182 4.182 16 C -0.182 4.182 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.510 14.754 16.781 23.910 hybrid contribution 0.937 1.031 -1.507 2.052 sum 9.447 15.785 15.274 23.910 Atomic orbital electron populations 1.22228 0.92586 1.04464 1.01601 1.19682 0.96525 0.94327 0.83042 0.90995 1.20857 0.93988 1.04252 0.98593 1.23200 0.98953 0.99520 1.02399 1.86562 1.88005 1.18735 1.08664 1.25092 1.01616 1.02604 0.96461 1.21409 0.83343 0.96814 1.00791 1.46865 1.15208 1.44890 1.28939 1.15750 0.83392 0.78649 0.80534 1.90865 1.23260 1.63724 1.68012 1.45512 1.24923 1.46505 1.22151 1.21478 0.93365 0.90123 0.92689 1.20908 0.96541 0.97115 0.92682 1.21743 1.00679 0.95883 0.99927 1.21744 0.96177 0.98977 1.01289 1.19080 0.94200 0.92318 0.94470 1.21180 1.05027 1.23367 1.05342 0.92302 1.25011 0.94934 0.96484 0.98046 1.69965 1.16054 1.29614 1.37711 0.86659 0.79301 0.78889 0.83518 1.20776 1.21354 1.19974 0.93258 0.92329 0.88889 0.89408 0.90244 0.89911 0.87710 0.88718 0.87553 0.90076 0.90588 0.77363 0.91961 0.92093 0.95555 0.91496 0.93368 0.93288 0.91514 0.95612 0.96298 0.96337 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 7.72 37.16 0.29 -1.42 16 2 C 0.17 1.60 2.57 -70.57 -0.18 1.42 16 3 H 0.07 0.53 7.72 -51.93 -0.40 0.13 16 4 C -0.14 -1.21 4.49 -30.51 -0.14 -1.34 16 5 C -0.09 -0.73 5.97 37.41 0.22 -0.50 16 6 S -0.25 -2.68 20.99 -107.50 -2.26 -4.94 16 7 C -0.11 -0.94 7.08 39.15 0.28 -0.66 16 8 C 0.10 0.87 4.66 -4.01 -0.02 0.85 16 9 N -0.62 -6.99 2.05 -174.92 -0.36 -7.35 16 10 C 0.71 10.89 7.90 -86.92 -0.69 10.21 16 11 O -0.58 -10.82 13.00 5.29 0.07 -10.76 16 12 N -0.74 -10.92 4.85 -65.23 -0.32 -11.24 16 13 C 0.15 2.64 4.56 -4.04 -0.02 2.62 16 14 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 15 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 16 C -0.12 -2.19 8.05 37.16 0.30 -1.89 16 17 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 18 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 19 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.76 7.74 -51.93 -0.40 0.36 16 28 H 0.09 1.32 6.12 -51.93 -0.32 1.00 16 29 H 0.09 1.05 7.70 -51.93 -0.40 0.65 16 30 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.08 0.53 7.16 -51.79 -0.37 0.15 16 32 H 0.10 0.72 8.14 -51.80 -0.42 0.30 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.05 7.74 -51.92 -0.40 0.64 16 35 H 0.08 0.50 6.83 -51.93 -0.35 0.15 16 36 H 0.08 0.60 7.01 -51.93 -0.36 0.23 16 37 H 0.39 5.00 3.81 -40.82 -0.16 4.85 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 45 H 0.02 0.37 6.86 -51.93 -0.36 0.01 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -31.14 367.96 -10.04 -41.18 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.23 Total: 2.68 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.21 Total: -5.59 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.06 Total: -44.30 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.26 Total: -4.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.14 -10.04 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358677106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.567 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds