Wall clock time and date at job start Tue Mar 31 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.03710 * 2 1 4 4 C 1.44332 * 109.09288 * 119.05488 * 2 1 3 5 5 C 1.53492 * 112.94816 * 179.87016 * 4 2 1 6 6 S 1.78693 * 107.06942 * 277.78160 * 5 4 2 7 7 C 1.83147 * 105.76755 * 92.55916 * 6 5 4 8 8 C 1.56688 * 108.04186 * 321.71752 * 7 6 5 9 9 N 1.42781 * 113.65944 * 321.09003 * 8 7 6 10 10 C 1.34779 * 121.56451 * 284.08873 * 9 8 7 11 11 O 1.21585 * 119.99862 * 174.48514 * 10 9 8 12 12 N 1.34773 * 120.00041 * 354.48539 * 10 9 8 13 13 C 1.46502 * 120.00162 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47441 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47089 * 300.00272 * 14 13 12 16 16 C 1.53004 * 109.46931 * 60.00021 * 14 13 12 17 17 C 1.53001 * 109.47077 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46622 * 180.02562 * 17 14 13 19 19 H 1.07995 * 120.00594 * 359.97438 * 18 17 14 20 20 C 1.37883 * 119.99750 * 180.02562 * 18 17 14 21 21 N 1.31514 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00168 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47011 * 89.99774 * 22 20 18 24 24 H 1.48502 * 109.46987 * 209.99995 * 22 20 18 25 25 H 1.48494 * 109.47052 * 329.99881 * 22 20 18 26 26 H 1.08994 * 109.46755 * 311.24485 * 1 2 3 27 27 H 1.09003 * 109.46687 * 71.24181 * 1 2 3 28 28 H 1.09000 * 109.47257 * 191.24124 * 1 2 3 29 29 H 1.08997 * 108.78895 * 58.97040 * 4 2 1 30 30 H 1.09001 * 108.78594 * 300.75912 * 4 2 1 31 31 H 1.08994 * 109.93466 * 37.17641 * 5 4 2 32 32 H 1.09004 * 109.92966 * 158.31177 * 5 4 2 33 33 H 1.09001 * 109.74755 * 81.36141 * 7 6 5 34 34 H 1.09008 * 109.74220 * 202.03305 * 7 6 5 35 35 H 1.08999 * 108.64757 * 82.17123 * 8 7 6 36 36 H 1.08998 * 108.64408 * 200.00945 * 8 7 6 37 37 H 0.97001 * 120.00298 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47155 * 300.00148 * 13 12 10 39 39 H 1.09002 * 109.46755 * 59.99942 * 13 12 10 40 40 H 1.08999 * 109.47372 * 59.99881 * 15 14 13 41 41 H 1.09000 * 109.46879 * 179.97438 * 15 14 13 42 42 H 1.08999 * 109.46848 * 299.99529 * 15 14 13 43 43 H 1.09000 * 109.47073 * 60.00185 * 16 14 13 44 44 H 1.09000 * 109.47208 * 179.97438 * 16 14 13 45 45 H 1.09000 * 109.47348 * 300.00447 * 16 14 13 46 46 H 1.09000 * 109.47439 * 300.00129 * 17 14 13 47 47 H 1.09002 * 109.46834 * 60.00146 * 17 14 13 48 48 H 0.97003 * 120.00276 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8855 1.0303 0.0000 4 6 2.0021 -0.6624 1.1923 5 6 3.5336 -0.7153 1.2809 6 16 4.0688 -2.1016 0.2886 7 6 4.4106 -1.4193 -1.3763 8 6 3.3240 -0.3345 -1.6887 9 7 2.0174 -0.6838 -1.2309 10 6 1.2608 -1.5899 -1.8813 11 8 0.1950 -1.9405 -1.4127 12 7 1.6855 -2.1074 -3.0510 13 6 0.8629 -3.0919 -3.7582 14 6 1.5688 -3.5140 -5.0483 15 6 1.7771 -2.2885 -5.9402 16 6 2.9257 -4.1336 -4.7079 17 6 0.7098 -4.5427 -5.7865 18 6 1.4055 -4.9589 -7.0569 19 1 2.3641 -4.5321 -7.3124 20 6 0.8176 -5.8838 -7.8936 21 7 -0.3500 -6.4031 -7.5827 22 14 1.6795 -6.3992 -9.4687 23 1 2.5517 -7.5697 -9.1954 24 1 0.6660 -6.7649 -10.4906 25 1 2.5059 -5.2729 -9.9720 26 1 -0.3632 0.6775 0.7727 27 1 -0.3633 0.3305 -0.9731 28 1 -0.3634 -1.0079 0.2003 29 1 1.6143 -1.6809 1.2050 30 1 1.6182 -0.1321 2.0638 31 1 3.9606 0.2083 0.8903 32 1 3.8411 -0.8576 2.3170 33 1 5.4008 -0.9639 -1.3916 34 1 4.3604 -2.2163 -2.1183 35 1 3.6202 0.6018 -1.2158 36 1 3.2857 -0.1800 -2.7670 37 1 2.5360 -1.8280 -3.4246 38 1 0.7141 -3.9649 -3.1226 39 1 -0.1037 -2.6503 -4.0011 40 1 2.3892 -1.5560 -5.4140 41 1 2.2804 -2.5892 -6.8590 42 1 0.8104 -1.8471 -6.1827 43 1 2.7773 -5.0067 -4.0725 44 1 3.4284 -4.4348 -5.6269 45 1 3.5378 -3.4012 -4.1816 46 1 0.5618 -5.4158 -5.1510 47 1 -0.2571 -4.1017 -6.0290 48 1 -0.7635 -7.0541 -8.1711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358677106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:39 Heat of formation + Delta-G solvation = -49.501301 kcal Electronic energy + Delta-G solvation = -25805.307773 eV Core-core repulsion = 22406.715607 eV Total energy + Delta-G solvation = -3398.592166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69589 -39.24022 -37.80783 -35.87537 -34.75284 -33.49168 -31.86121 -30.04783 -29.00711 -27.97103 -27.56549 -25.39832 -24.95936 -24.34036 -22.60630 -21.00327 -19.73144 -18.56392 -18.35664 -17.74862 -17.16330 -16.67218 -16.56956 -16.08776 -15.77212 -15.51628 -15.44738 -14.93483 -14.76335 -14.55104 -14.31478 -14.20431 -14.00097 -13.93437 -13.66157 -13.16847 -12.96882 -12.84919 -12.71526 -12.69790 -12.57242 -12.35939 -12.27775 -12.21642 -12.16347 -11.96044 -11.76484 -11.53203 -11.03513 -10.86222 -10.62793 -10.57223 -10.50508 -10.09469 -9.53833 -8.52082 -8.12876 -6.20874 0.76670 1.43158 1.43741 1.53974 1.63248 1.80801 2.23533 2.45025 3.04651 3.21580 3.61495 3.71974 3.85659 3.98419 4.07017 4.10506 4.19417 4.23578 4.35289 4.43406 4.46921 4.63482 4.66083 4.72390 4.74863 4.78049 4.80052 4.82676 4.88156 4.96578 5.05641 5.11463 5.12062 5.33844 5.36298 5.40955 5.49913 5.51298 5.55157 5.63410 5.75673 5.81124 5.90668 6.00765 6.31634 6.94014 7.08018 7.46861 7.67417 8.99783 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.003202 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.046865 B = 8742.021948 C = 9264.639509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.163 3.837 3 H 0.113 0.887 4 C -0.131 4.131 5 C -0.071 4.071 6 S -0.327 6.327 7 C -0.092 4.092 8 C 0.095 3.905 9 N -0.614 5.614 10 C 0.709 3.291 11 O -0.623 6.623 12 N -0.725 5.725 13 C 0.164 3.836 14 C -0.063 4.063 15 C -0.118 4.118 16 C -0.118 4.118 17 C 0.041 3.959 18 C -0.513 4.513 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.959 3.041 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.258 1.258 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.404 0.596 38 H 0.037 0.963 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.057 0.943 45 H 0.065 0.935 46 H -0.017 1.017 47 H -0.014 1.014 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.595 19.404 16.458 28.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.062 3.938 3 H 0.131 0.869 4 C -0.172 4.172 5 C -0.219 4.219 6 S -0.101 6.101 7 C -0.242 4.242 8 C -0.032 4.032 9 N -0.350 5.350 10 C 0.411 3.589 11 O -0.504 6.504 12 N -0.382 5.382 13 C 0.039 3.961 14 C -0.063 4.063 15 C -0.175 4.175 16 C -0.175 4.175 17 C 0.003 3.997 18 C -0.551 4.551 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.182 1.182 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.242 0.758 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.002 0.998 47 H 0.004 0.996 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.790 18.022 17.048 27.467 hybrid contribution -0.107 0.058 -1.476 1.481 sum 11.682 18.080 15.572 26.568 Atomic orbital electron populations 1.22102 0.94315 1.02711 1.01190 1.19947 0.95198 0.96171 0.82503 0.86889 1.20764 0.94921 1.02138 0.99330 1.23200 0.97668 0.98717 1.02273 1.86922 1.88458 1.22815 1.11874 1.25105 1.03124 1.02160 0.93785 1.21726 0.81482 0.98002 1.01958 1.46888 1.15945 1.43346 1.28858 1.15978 0.83312 0.79130 0.80484 1.90864 1.25386 1.65229 1.68924 1.45168 1.24954 1.45902 1.22221 1.20990 0.93087 0.89928 0.92102 1.20696 0.96306 0.96573 0.92765 1.21658 1.00814 0.95620 0.99436 1.21657 0.95420 0.99425 1.00980 1.18955 0.93877 0.92474 0.94348 1.21588 1.05316 1.22692 1.05483 0.90819 1.25962 0.95616 0.96821 1.01841 1.70130 1.17998 1.30652 1.39256 0.85535 0.78120 0.78920 0.79011 1.20232 1.21613 1.18165 0.90476 0.94475 0.92642 0.93401 0.87601 0.87149 0.86612 0.85885 0.88916 0.86490 0.89373 0.75815 0.94492 0.93992 0.91434 0.92456 0.94421 0.94838 0.92372 0.91636 0.99831 0.99576 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 7.72 71.98 0.56 -2.62 16 2 C 0.16 2.66 2.57 41.90 0.11 2.77 16 3 H 0.11 1.03 7.72 -2.39 -0.02 1.01 16 4 C -0.13 -2.00 4.49 28.15 0.13 -1.87 16 5 C -0.07 -0.87 5.97 72.15 0.43 -0.44 16 6 S -0.33 -6.58 20.99 -56.49 -1.19 -7.77 16 7 C -0.09 -1.29 7.08 73.27 0.52 -0.77 16 8 C 0.10 1.17 4.66 88.35 0.41 1.59 16 9 N -0.61 -12.39 2.05 -825.58 -1.69 -14.09 16 10 C 0.71 21.44 7.90 179.05 1.41 22.86 16 11 O -0.62 -24.33 13.00 -3.99 -0.05 -24.38 16 12 N -0.73 -21.04 4.85 -478.54 -2.32 -23.36 16 13 C 0.16 6.13 4.56 86.38 0.39 6.53 16 14 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 15 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 16 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 17 C 0.04 2.12 4.04 29.85 0.12 2.24 16 18 C -0.51 -27.61 7.65 25.60 0.20 -27.42 16 19 H 0.07 3.69 5.68 -2.91 -0.02 3.67 16 20 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 21 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 22 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.04 0.95 7.74 -2.39 -0.02 0.93 16 28 H 0.05 1.64 6.12 -2.39 -0.01 1.63 16 29 H 0.05 1.15 7.70 -2.39 -0.02 1.13 16 30 H 0.11 1.08 8.13 -2.39 -0.02 1.06 16 31 H 0.11 0.77 7.16 -2.48 -0.02 0.76 16 32 H 0.12 1.20 8.14 -2.47 -0.02 1.18 16 33 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.56 7.74 -2.38 -0.02 1.54 16 35 H 0.12 0.70 6.83 -2.39 -0.02 0.68 16 36 H 0.09 0.95 7.01 -2.39 -0.02 0.93 16 37 H 0.40 9.28 3.81 -92.71 -0.35 8.92 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.69 6.86 -2.39 -0.02 1.68 16 41 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 2.10 6.62 -2.39 -0.02 2.09 16 45 H 0.06 1.71 6.86 -2.39 -0.02 1.70 16 46 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 47 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 48 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -74.03 367.96 3.51 -70.52 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.58 Total: 16.99 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.87 Total: -6.26 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.73 Total: -94.85 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -6.58 SS G_CDS: -1.19 Total: -7.77 kcal Total: -74.03 3.51 -70.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358677106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.021 kcal (2) G-P(sol) polarization free energy of solvation -74.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds