Wall clock time and date at job start Tue Mar 31 2020 12:09:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08991 * 109.03710 * 2 1
4 4 C 1.44332 * 109.09288 * 119.05488 * 2 1 3
5 5 C 1.53492 * 112.94816 * 179.87016 * 4 2 1
6 6 S 1.78693 * 107.06942 * 277.78160 * 5 4 2
7 7 C 1.83147 * 105.76755 * 92.55916 * 6 5 4
8 8 C 1.56688 * 108.04186 * 321.71752 * 7 6 5
9 9 N 1.42781 * 113.65944 * 321.09003 * 8 7 6
10 10 C 1.34779 * 121.56451 * 284.08873 * 9 8 7
11 11 O 1.21585 * 119.99862 * 174.48514 * 10 9 8
12 12 N 1.34773 * 120.00041 * 354.48539 * 10 9 8
13 13 C 1.46502 * 120.00162 * 180.02562 * 12 10 9
14 14 C 1.52997 * 109.47441 * 179.97438 * 13 12 10
15 15 C 1.52999 * 109.47089 * 300.00272 * 14 13 12
16 16 C 1.53004 * 109.46931 * 60.00021 * 14 13 12
17 17 C 1.53001 * 109.47077 * 179.97438 * 14 13 12
18 18 C 1.50700 * 109.46622 * 180.02562 * 17 14 13
19 19 H 1.07995 * 120.00594 * 359.97438 * 18 17 14
20 20 C 1.37883 * 119.99750 * 180.02562 * 18 17 14
21 21 N 1.31514 * 119.99913 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 120.00168 * 179.97438 * 20 18 17
23 23 H 1.48505 * 109.47011 * 89.99774 * 22 20 18
24 24 H 1.48502 * 109.46987 * 209.99995 * 22 20 18
25 25 H 1.48494 * 109.47052 * 329.99881 * 22 20 18
26 26 H 1.08994 * 109.46755 * 311.24485 * 1 2 3
27 27 H 1.09003 * 109.46687 * 71.24181 * 1 2 3
28 28 H 1.09000 * 109.47257 * 191.24124 * 1 2 3
29 29 H 1.08997 * 108.78895 * 58.97040 * 4 2 1
30 30 H 1.09001 * 108.78594 * 300.75912 * 4 2 1
31 31 H 1.08994 * 109.93466 * 37.17641 * 5 4 2
32 32 H 1.09004 * 109.92966 * 158.31177 * 5 4 2
33 33 H 1.09001 * 109.74755 * 81.36141 * 7 6 5
34 34 H 1.09008 * 109.74220 * 202.03305 * 7 6 5
35 35 H 1.08999 * 108.64757 * 82.17123 * 8 7 6
36 36 H 1.08998 * 108.64408 * 200.00945 * 8 7 6
37 37 H 0.97001 * 120.00298 * 0.02562 * 12 10 9
38 38 H 1.09000 * 109.47155 * 300.00148 * 13 12 10
39 39 H 1.09002 * 109.46755 * 59.99942 * 13 12 10
40 40 H 1.08999 * 109.47372 * 59.99881 * 15 14 13
41 41 H 1.09000 * 109.46879 * 179.97438 * 15 14 13
42 42 H 1.08999 * 109.46848 * 299.99529 * 15 14 13
43 43 H 1.09000 * 109.47073 * 60.00185 * 16 14 13
44 44 H 1.09000 * 109.47208 * 179.97438 * 16 14 13
45 45 H 1.09000 * 109.47348 * 300.00447 * 16 14 13
46 46 H 1.09000 * 109.47439 * 300.00129 * 17 14 13
47 47 H 1.09002 * 109.46834 * 60.00146 * 17 14 13
48 48 H 0.97003 * 120.00276 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8855 1.0303 0.0000
4 6 2.0021 -0.6624 1.1923
5 6 3.5336 -0.7153 1.2809
6 16 4.0688 -2.1016 0.2886
7 6 4.4106 -1.4193 -1.3763
8 6 3.3240 -0.3345 -1.6887
9 7 2.0174 -0.6838 -1.2309
10 6 1.2608 -1.5899 -1.8813
11 8 0.1950 -1.9405 -1.4127
12 7 1.6855 -2.1074 -3.0510
13 6 0.8629 -3.0919 -3.7582
14 6 1.5688 -3.5140 -5.0483
15 6 1.7771 -2.2885 -5.9402
16 6 2.9257 -4.1336 -4.7079
17 6 0.7098 -4.5427 -5.7865
18 6 1.4055 -4.9589 -7.0569
19 1 2.3641 -4.5321 -7.3124
20 6 0.8176 -5.8838 -7.8936
21 7 -0.3500 -6.4031 -7.5827
22 14 1.6795 -6.3992 -9.4687
23 1 2.5517 -7.5697 -9.1954
24 1 0.6660 -6.7649 -10.4906
25 1 2.5059 -5.2729 -9.9720
26 1 -0.3632 0.6775 0.7727
27 1 -0.3633 0.3305 -0.9731
28 1 -0.3634 -1.0079 0.2003
29 1 1.6143 -1.6809 1.2050
30 1 1.6182 -0.1321 2.0638
31 1 3.9606 0.2083 0.8903
32 1 3.8411 -0.8576 2.3170
33 1 5.4008 -0.9639 -1.3916
34 1 4.3604 -2.2163 -2.1183
35 1 3.6202 0.6018 -1.2158
36 1 3.2857 -0.1800 -2.7670
37 1 2.5360 -1.8280 -3.4246
38 1 0.7141 -3.9649 -3.1226
39 1 -0.1037 -2.6503 -4.0011
40 1 2.3892 -1.5560 -5.4140
41 1 2.2804 -2.5892 -6.8590
42 1 0.8104 -1.8471 -6.1827
43 1 2.7773 -5.0067 -4.0725
44 1 3.4284 -4.4348 -5.6269
45 1 3.5378 -3.4012 -4.1816
46 1 0.5618 -5.4158 -5.1510
47 1 -0.2571 -4.1017 -6.0290
48 1 -0.7635 -7.0541 -8.1711
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000358677106.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:39
Heat of formation + Delta-G solvation = -49.501301 kcal
Electronic energy + Delta-G solvation = -25805.307773 eV
Core-core repulsion = 22406.715607 eV
Total energy + Delta-G solvation = -3398.592166 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.69589 -39.24022 -37.80783 -35.87537 -34.75284 -33.49168 -31.86121 -30.04783
-29.00711 -27.97103 -27.56549 -25.39832 -24.95936 -24.34036 -22.60630 -21.00327
-19.73144 -18.56392 -18.35664 -17.74862 -17.16330 -16.67218 -16.56956 -16.08776
-15.77212 -15.51628 -15.44738 -14.93483 -14.76335 -14.55104 -14.31478 -14.20431
-14.00097 -13.93437 -13.66157 -13.16847 -12.96882 -12.84919 -12.71526 -12.69790
-12.57242 -12.35939 -12.27775 -12.21642 -12.16347 -11.96044 -11.76484 -11.53203
-11.03513 -10.86222 -10.62793 -10.57223 -10.50508 -10.09469 -9.53833 -8.52082
-8.12876 -6.20874 0.76670 1.43158 1.43741 1.53974 1.63248 1.80801
2.23533 2.45025 3.04651 3.21580 3.61495 3.71974 3.85659 3.98419
4.07017 4.10506 4.19417 4.23578 4.35289 4.43406 4.46921 4.63482
4.66083 4.72390 4.74863 4.78049 4.80052 4.82676 4.88156 4.96578
5.05641 5.11463 5.12062 5.33844 5.36298 5.40955 5.49913 5.51298
5.55157 5.63410 5.75673 5.81124 5.90668 6.00765 6.31634 6.94014
7.08018 7.46861 7.67417 8.99783
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.024426 B = 0.003202 C = 0.003022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1146.046865 B = 8742.021948 C = 9264.639509
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.163 3.837
3 H 0.113 0.887
4 C -0.131 4.131
5 C -0.071 4.071
6 S -0.327 6.327
7 C -0.092 4.092
8 C 0.095 3.905
9 N -0.614 5.614
10 C 0.709 3.291
11 O -0.623 6.623
12 N -0.725 5.725
13 C 0.164 3.836
14 C -0.063 4.063
15 C -0.118 4.118
16 C -0.118 4.118
17 C 0.041 3.959
18 C -0.513 4.513
19 H 0.074 0.926
20 C -0.006 4.006
21 N -0.939 5.939
22 Si 0.959 3.041
23 H -0.277 1.277
24 H -0.290 1.290
25 H -0.258 1.258
26 H 0.077 0.923
27 H 0.036 0.964
28 H 0.055 0.945
29 H 0.047 0.953
30 H 0.106 0.894
31 H 0.110 0.890
32 H 0.116 0.884
33 H 0.123 0.877
34 H 0.092 0.908
35 H 0.117 0.883
36 H 0.088 0.912
37 H 0.404 0.596
38 H 0.037 0.963
39 H 0.042 0.958
40 H 0.067 0.933
41 H 0.056 0.944
42 H 0.037 0.963
43 H 0.032 0.968
44 H 0.057 0.943
45 H 0.065 0.935
46 H -0.017 1.017
47 H -0.014 1.014
48 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.595 19.404 16.458 28.390
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.062 3.938
3 H 0.131 0.869
4 C -0.172 4.172
5 C -0.219 4.219
6 S -0.101 6.101
7 C -0.242 4.242
8 C -0.032 4.032
9 N -0.350 5.350
10 C 0.411 3.589
11 O -0.504 6.504
12 N -0.382 5.382
13 C 0.039 3.961
14 C -0.063 4.063
15 C -0.175 4.175
16 C -0.175 4.175
17 C 0.003 3.997
18 C -0.551 4.551
19 H 0.092 0.908
20 C -0.202 4.202
21 N -0.580 5.580
22 Si 0.784 3.216
23 H -0.202 1.202
24 H -0.216 1.216
25 H -0.182 1.182
26 H 0.095 0.905
27 H 0.055 0.945
28 H 0.074 0.926
29 H 0.066 0.934
30 H 0.124 0.876
31 H 0.129 0.871
32 H 0.134 0.866
33 H 0.141 0.859
34 H 0.111 0.889
35 H 0.135 0.865
36 H 0.106 0.894
37 H 0.242 0.758
38 H 0.055 0.945
39 H 0.060 0.940
40 H 0.086 0.914
41 H 0.075 0.925
42 H 0.056 0.944
43 H 0.052 0.948
44 H 0.076 0.924
45 H 0.084 0.916
46 H 0.002 0.998
47 H 0.004 0.996
48 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 11.790 18.022 17.048 27.467
hybrid contribution -0.107 0.058 -1.476 1.481
sum 11.682 18.080 15.572 26.568
Atomic orbital electron populations
1.22102 0.94315 1.02711 1.01190 1.19947 0.95198 0.96171 0.82503
0.86889 1.20764 0.94921 1.02138 0.99330 1.23200 0.97668 0.98717
1.02273 1.86922 1.88458 1.22815 1.11874 1.25105 1.03124 1.02160
0.93785 1.21726 0.81482 0.98002 1.01958 1.46888 1.15945 1.43346
1.28858 1.15978 0.83312 0.79130 0.80484 1.90864 1.25386 1.65229
1.68924 1.45168 1.24954 1.45902 1.22221 1.20990 0.93087 0.89928
0.92102 1.20696 0.96306 0.96573 0.92765 1.21658 1.00814 0.95620
0.99436 1.21657 0.95420 0.99425 1.00980 1.18955 0.93877 0.92474
0.94348 1.21588 1.05316 1.22692 1.05483 0.90819 1.25962 0.95616
0.96821 1.01841 1.70130 1.17998 1.30652 1.39256 0.85535 0.78120
0.78920 0.79011 1.20232 1.21613 1.18165 0.90476 0.94475 0.92642
0.93401 0.87601 0.87149 0.86612 0.85885 0.88916 0.86490 0.89373
0.75815 0.94492 0.93992 0.91434 0.92456 0.94421 0.94838 0.92372
0.91636 0.99831 0.99576 0.93200
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.17 7.72 71.98 0.56 -2.62 16
2 C 0.16 2.66 2.57 41.90 0.11 2.77 16
3 H 0.11 1.03 7.72 -2.39 -0.02 1.01 16
4 C -0.13 -2.00 4.49 28.15 0.13 -1.87 16
5 C -0.07 -0.87 5.97 72.15 0.43 -0.44 16
6 S -0.33 -6.58 20.99 -56.49 -1.19 -7.77 16
7 C -0.09 -1.29 7.08 73.27 0.52 -0.77 16
8 C 0.10 1.17 4.66 88.35 0.41 1.59 16
9 N -0.61 -12.39 2.05 -825.58 -1.69 -14.09 16
10 C 0.71 21.44 7.90 179.05 1.41 22.86 16
11 O -0.62 -24.33 13.00 -3.99 -0.05 -24.38 16
12 N -0.73 -21.04 4.85 -478.54 -2.32 -23.36 16
13 C 0.16 6.13 4.56 86.38 0.39 6.53 16
14 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16
15 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16
16 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16
17 C 0.04 2.12 4.04 29.85 0.12 2.24 16
18 C -0.51 -27.61 7.65 25.60 0.20 -27.42 16
19 H 0.07 3.69 5.68 -2.91 -0.02 3.67 16
20 C -0.01 -0.32 5.46 84.66 0.46 0.14 16
21 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16
22 Si 0.96 43.72 29.54 68.60 2.03 45.75 16
23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16
24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16
26 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16
27 H 0.04 0.95 7.74 -2.39 -0.02 0.93 16
28 H 0.05 1.64 6.12 -2.39 -0.01 1.63 16
29 H 0.05 1.15 7.70 -2.39 -0.02 1.13 16
30 H 0.11 1.08 8.13 -2.39 -0.02 1.06 16
31 H 0.11 0.77 7.16 -2.48 -0.02 0.76 16
32 H 0.12 1.20 8.14 -2.47 -0.02 1.18 16
33 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16
34 H 0.09 1.56 7.74 -2.38 -0.02 1.54 16
35 H 0.12 0.70 6.83 -2.39 -0.02 0.68 16
36 H 0.09 0.95 7.01 -2.39 -0.02 0.93 16
37 H 0.40 9.28 3.81 -92.71 -0.35 8.92 16
38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16
40 H 0.07 1.69 6.86 -2.39 -0.02 1.68 16
41 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16
42 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16
43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16
44 H 0.06 2.10 6.62 -2.39 -0.02 2.09 16
45 H 0.06 1.71 6.86 -2.39 -0.02 1.70 16
46 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16
47 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16
48 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16
Total: -1.00 -74.03 367.96 3.51 -70.52
By element:
Atomic # 1 Polarization: 16.41 SS G_CDS: 0.58 Total: 16.99 kcal
Atomic # 6 Polarization: -12.13 SS G_CDS: 5.87 Total: -6.26 kcal
Atomic # 7 Polarization: -91.12 SS G_CDS: -3.73 Total: -94.85 kcal
Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal
Atomic # 16 Polarization: -6.58 SS G_CDS: -1.19 Total: -7.77 kcal
Total: -74.03 3.51 -70.52 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000358677106.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.021 kcal
(2) G-P(sol) polarization free energy of solvation -74.029 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.523 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.501 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds