Wall clock time and date at job start Tue Mar 31 2020 10:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99906 * 2 1 4 4 N 1.46899 * 109.47019 * 124.14275 * 3 2 1 5 5 C 1.46902 * 110.99874 * 300.57512 * 4 3 2 6 6 C 1.52995 * 109.47394 * 287.99138 * 5 4 3 7 7 C 1.47204 * 109.47258 * 179.27395 * 6 5 4 8 8 N 5.53662 * 77.89816 * 65.45651 * 2 1 3 9 9 C 1.46891 * 111.00281 * 64.53174 * 4 3 2 10 10 C 1.50703 * 109.47122 * 66.04852 * 9 4 3 11 11 C 1.38292 * 119.96838 * 269.97663 * 10 9 4 12 12 C 1.38243 * 120.10894 * 180.02562 * 11 10 9 13 13 C 1.38173 * 120.05628 * 359.67393 * 12 11 10 14 14 C 1.38715 * 119.94248 * 0.62614 * 13 12 11 15 15 O 1.35895 * 120.05461 * 179.67291 * 14 13 12 16 16 C 1.42900 * 117.00252 * 359.72398 * 15 14 13 17 17 C 1.53000 * 109.47160 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47196 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99707 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99967 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47149 * 59.99544 * 22 20 18 24 24 H 1.48503 * 109.47201 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46951 * 300.00104 * 22 20 18 26 26 C 1.38124 * 119.97359 * 90.00014 * 10 9 4 27 27 H 1.07999 * 119.99882 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99881 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00132 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46990 * 4.13793 * 3 2 1 31 31 H 1.09001 * 109.46567 * 244.14103 * 3 2 1 32 32 H 1.09004 * 109.46602 * 47.99208 * 5 4 3 33 33 H 1.08999 * 109.47049 * 167.98789 * 5 4 3 34 34 H 1.09005 * 109.47104 * 299.26937 * 6 5 4 35 35 H 1.09005 * 109.47219 * 59.27449 * 6 5 4 36 36 H 1.09000 * 109.47508 * 306.04491 * 9 4 3 37 37 H 1.08999 * 109.47337 * 186.04810 * 9 4 3 38 38 H 1.07990 * 119.94539 * 0.02562 * 11 10 9 39 39 H 1.07995 * 119.97347 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.03059 * 180.29437 * 13 12 11 41 41 H 1.08998 * 109.47261 * 300.00221 * 16 15 14 42 42 H 1.09000 * 109.46721 * 59.99807 * 16 15 14 43 43 H 1.08998 * 109.47320 * 300.00314 * 17 16 15 44 44 H 1.09000 * 109.47003 * 59.99912 * 17 16 15 45 45 H 0.96998 * 119.99431 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.02967 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9815 1.3406 1.1463 5 6 2.2483 1.2070 2.4122 6 6 1.4754 2.4972 2.6926 7 6 0.7269 2.3570 3.9523 8 7 0.1492 2.2487 4.9244 9 6 4.0155 0.3043 1.0249 10 6 4.9017 0.6146 -0.1538 11 6 4.5855 0.1186 -1.4054 12 6 5.3967 0.4010 -2.4886 13 6 6.5223 1.1854 -2.3243 14 6 6.8450 1.6790 -1.0688 15 8 7.9551 2.4452 -0.9034 16 6 8.7479 2.6980 -2.0651 17 6 9.9452 3.5716 -1.6853 18 6 10.7810 3.8387 -2.9105 19 1 10.4877 3.4263 -3.8646 20 6 11.9205 4.6088 -2.8132 21 7 12.2779 5.1105 -1.6513 22 14 12.9568 4.9393 -4.3319 23 1 12.1344 5.6423 -5.3489 24 1 14.1189 5.7873 -3.9632 25 1 13.4407 3.6513 -4.8908 26 6 6.0294 1.3937 0.0169 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3575 2.1323 0.0742 31 1 2.6333 1.3956 -0.9248 32 1 1.5498 0.3731 2.3412 33 1 2.9534 1.0224 3.2227 34 1 2.1750 3.3290 2.7764 35 1 0.7794 2.6887 1.8758 36 1 3.5417 -0.6663 0.8777 37 1 4.6155 0.2814 1.9345 38 1 3.7034 -0.4904 -1.5368 39 1 5.1479 0.0122 -3.4649 40 1 7.1531 1.4097 -3.1717 41 1 9.1030 1.7527 -2.4755 42 1 8.1443 3.2142 -2.8116 43 1 9.5898 4.5168 -1.2752 44 1 10.5489 3.0558 -0.9386 45 1 13.0794 5.6526 -1.5831 46 1 6.2764 1.7802 0.9947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430086268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:38 Heat of formation + Delta-G solvation = 11.532678 kcal Electronic energy + Delta-G solvation = -24585.808464 eV Core-core repulsion = 21054.418979 eV Total energy + Delta-G solvation = -3531.389485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.11261 -39.78807 -38.24063 -37.43497 -35.44682 -34.15883 -33.32720 -32.53905 -31.18610 -30.36884 -27.75805 -26.92926 -26.02810 -23.61235 -23.24661 -22.65886 -21.64675 -20.22573 -18.98854 -18.46896 -18.02958 -17.12543 -16.95027 -16.86144 -16.73739 -16.54389 -16.35677 -15.63357 -15.20823 -15.15320 -14.82067 -14.35215 -14.28998 -14.24107 -14.18598 -13.93032 -13.50611 -13.32052 -13.15373 -12.94021 -12.71745 -12.61483 -12.51741 -12.50303 -12.40422 -12.28905 -12.05561 -11.75589 -11.63120 -11.53717 -11.52225 -11.34239 -10.59667 -10.23882 -9.73505 -9.21607 -8.97916 -8.24794 -6.38430 0.42471 0.61487 1.42178 1.43160 1.46060 1.54044 1.77356 1.85333 2.30826 2.55660 2.71078 3.03961 3.09440 3.54933 3.88733 3.99503 4.02104 4.12014 4.15296 4.28722 4.30321 4.30385 4.30693 4.45067 4.50488 4.56469 4.66288 4.68346 4.77061 4.84632 4.91918 4.99350 5.07645 5.12235 5.19275 5.22246 5.34577 5.49729 5.52862 5.60535 5.66817 5.71659 5.77033 5.83430 5.96757 6.08812 6.11727 6.22582 6.63709 6.64703 6.76368 7.31536 8.88019 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019920 B = 0.002172 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.277604 B =12889.570924 C =13886.848289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.197 4.197 3 C 0.069 3.931 4 N -0.529 5.529 5 C 0.059 3.941 6 C -0.018 4.018 7 C 0.240 3.760 8 N -0.503 5.503 9 C 0.097 3.903 10 C -0.036 4.036 11 C -0.150 4.150 12 C -0.080 4.080 13 C -0.224 4.224 14 C 0.104 3.896 15 O -0.343 6.343 16 C 0.087 3.913 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.070 0.930 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.975 3.025 23 H -0.263 1.263 24 H -0.283 1.283 25 H -0.264 1.264 26 C -0.148 4.148 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.122 0.878 41 H 0.058 0.942 42 H 0.058 0.942 43 H -0.002 1.002 44 H -0.002 1.002 45 H 0.267 0.733 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.673 -12.047 1.402 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.216 4.216 3 C -0.058 4.058 4 N -0.251 5.251 5 C -0.070 4.070 6 C -0.058 4.058 7 C -0.077 4.077 8 N -0.182 5.182 9 C -0.030 4.030 10 C -0.036 4.036 11 C -0.168 4.168 12 C -0.098 4.098 13 C -0.243 4.243 14 C 0.059 3.941 15 O -0.257 6.257 16 C 0.012 3.988 17 C -0.009 4.009 18 C -0.584 4.584 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.189 1.189 26 C -0.167 4.167 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.140 0.860 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.017 0.983 44 H 0.016 0.984 45 H 0.075 0.925 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.078 -11.537 3.143 27.783 hybrid contribution 0.883 -0.296 -0.985 1.355 sum -24.195 -11.833 2.158 27.020 Atomic orbital electron populations 1.24022 0.95865 1.02521 0.99090 1.23581 0.96776 0.99838 1.01449 1.21600 0.94723 0.95069 0.94445 1.62112 1.13167 1.47739 1.02053 1.21981 0.97212 0.95736 0.92102 1.19406 0.98329 1.01181 0.86882 1.29642 0.92264 0.91401 0.94405 1.81282 1.12396 1.10540 1.13943 1.21040 0.92162 0.93759 0.96008 1.19582 0.93409 0.95111 0.95529 1.21163 1.01047 1.02914 0.91704 1.21173 0.92740 0.95611 1.00264 1.21468 1.01942 1.04757 0.96163 1.19551 0.87273 0.92015 0.95234 1.86080 1.35503 1.66280 1.37846 1.22808 0.91331 0.99002 0.85631 1.18958 0.91361 0.93749 0.96833 1.21371 1.09171 1.32768 0.95094 0.91144 1.26044 0.98903 0.95078 0.99745 1.70114 1.25792 1.34762 1.26294 0.85346 0.77657 0.78619 0.78497 1.18812 1.20837 1.18860 1.20414 0.95964 1.02922 0.97448 0.88428 0.87631 0.87319 0.88613 0.89940 0.92822 0.89727 0.85089 0.85350 0.91548 0.89214 0.83635 0.83617 0.86025 0.92414 0.92345 0.98330 0.98391 0.92463 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 14.32 67.78 0.97 -0.32 16 2 C -0.20 -1.60 7.35 25.65 0.19 -1.41 16 3 C 0.07 0.66 5.31 85.56 0.45 1.11 16 4 N -0.53 -5.85 4.66 -905.38 -4.22 -10.07 16 5 C 0.06 0.48 4.78 86.30 0.41 0.89 16 6 C -0.02 -0.11 5.76 28.79 0.17 0.05 16 7 C 0.24 3.33 15.43 89.44 1.38 4.72 16 8 N -0.50 -10.93 18.54 20.01 0.37 -10.56 16 9 C 0.10 1.28 4.96 85.56 0.42 1.70 16 10 C -0.04 -0.70 4.89 -19.88 -0.10 -0.80 16 11 C -0.15 -2.66 7.89 22.28 0.18 -2.49 16 12 C -0.08 -1.70 10.04 22.26 0.22 -1.48 16 13 C -0.22 -6.49 9.04 22.37 0.20 -6.28 16 14 C 0.10 3.51 6.69 22.51 0.15 3.66 16 15 O -0.34 -14.37 10.14 -92.37 -0.94 -15.31 16 16 C 0.09 3.78 4.68 71.98 0.34 4.12 16 17 C 0.03 1.54 5.34 29.85 0.16 1.70 16 18 C -0.55 -30.73 9.11 25.60 0.23 -30.49 16 19 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 20 C 0.00 0.05 5.46 84.66 0.46 0.51 16 21 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 22 Si 0.98 43.23 29.54 68.60 2.03 45.25 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 26 C -0.15 -4.06 9.64 22.37 0.22 -3.85 16 27 H 0.10 0.67 8.06 -2.91 -0.02 0.64 16 28 H 0.11 0.59 7.84 -2.91 -0.02 0.57 16 29 H 0.11 0.89 6.81 -2.91 -0.02 0.87 16 30 H 0.10 0.65 6.36 -2.39 -0.02 0.64 16 31 H 0.08 1.05 5.85 -2.39 -0.01 1.04 16 32 H 0.05 0.43 6.69 -2.38 -0.02 0.41 16 33 H 0.08 0.71 7.81 -2.39 -0.02 0.69 16 34 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.13 0.35 6.75 -2.38 -0.02 0.33 16 36 H 0.07 0.68 6.30 -2.39 -0.02 0.66 16 37 H 0.09 1.15 7.80 -2.39 -0.02 1.13 16 38 H 0.15 1.74 7.91 -2.92 -0.02 1.71 16 39 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.12 3.58 6.30 -2.91 -0.02 3.57 16 41 H 0.06 2.37 7.67 -2.39 -0.02 2.36 16 42 H 0.06 2.40 7.65 -2.39 -0.02 2.38 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -71.51 384.56 4.55 -66.96 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.97 Total: 8.62 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 6.06 Total: -28.67 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -3.56 Total: -76.86 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.94 Total: -15.31 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.51 4.55 -66.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430086268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.493 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds