Wall clock time and date at job start Tue Mar 31 2020 10:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47115 * 2 1 4 4 N 1.46500 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.34774 * 119.99892 * 90.00560 * 4 3 2 6 6 O 1.21666 * 120.00131 * 7.19068 * 5 4 3 7 7 C 1.46891 * 119.99876 * 187.19538 * 5 4 3 8 8 C 1.36120 * 125.44113 * 21.84526 * 7 5 4 9 9 C 1.41703 * 107.75231 * 180.24429 * 8 7 5 10 10 C 1.40017 * 133.35151 * 179.81730 * 9 8 7 11 11 C 1.36572 * 119.82709 * 179.97438 * 10 9 8 12 12 C 1.38847 * 120.60544 * 0.02562 * 11 10 9 13 13 C 1.37852 * 120.63320 * 359.97438 * 12 11 10 14 14 C 1.39087 * 119.81025 * 0.02562 * 13 12 11 15 15 N 1.37830 * 133.16080 * 180.02562 * 14 13 12 16 16 C 1.36895 * 125.62298 * 359.93260 * 15 14 13 17 17 H 1.07995 * 120.00125 * 138.96602 * 16 15 14 18 18 C 1.39012 * 120.00011 * 318.97372 * 16 15 14 19 19 N 1.31346 * 119.99841 * 344.41012 * 18 16 15 20 20 Si 1.86797 * 120.00191 * 164.13912 * 18 16 15 21 21 H 1.48499 * 109.47059 * 275.29282 * 20 18 16 22 22 H 1.48503 * 109.46865 * 35.28789 * 20 18 16 23 23 H 1.48497 * 109.47217 * 155.28926 * 20 18 16 24 24 C 1.46496 * 120.00177 * 269.99994 * 4 3 2 25 25 C 1.53002 * 109.47240 * 306.13721 * 24 4 3 26 26 C 1.53002 * 109.47182 * 66.13491 * 24 4 3 27 27 H 1.08999 * 109.47339 * 300.00127 * 1 2 3 28 28 H 1.09006 * 109.47400 * 60.00041 * 1 2 3 29 29 H 1.09007 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47036 * 240.00230 * 2 1 3 31 31 H 1.08996 * 109.47371 * 120.00104 * 2 1 3 32 32 H 1.09004 * 109.46981 * 60.00197 * 3 2 1 33 33 H 1.08996 * 109.47086 * 300.00278 * 3 2 1 34 34 H 1.08004 * 126.12385 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.08367 * 359.94213 * 10 9 8 36 36 H 1.08007 * 119.69612 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.68892 * 180.02562 * 12 11 10 38 38 H 1.07993 * 120.09315 * 180.02562 * 13 12 11 39 39 H 0.96998 * 120.00140 * 351.42004 * 19 18 16 40 40 H 1.09003 * 109.47346 * 186.13727 * 24 4 3 41 41 H 1.08991 * 109.47264 * 59.99521 * 25 24 4 42 42 H 1.09003 * 109.47216 * 179.97438 * 25 24 4 43 43 H 1.09005 * 109.46732 * 299.99760 * 25 24 4 44 44 H 1.08997 * 109.47158 * 53.66233 * 26 24 4 45 45 H 1.08994 * 109.47372 * 173.66521 * 26 24 4 46 46 H 1.09007 * 109.46996 * 293.66493 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1793 1.4424 -1.1663 6 8 3.5786 1.5742 -2.2161 7 6 5.6395 1.2830 -1.1707 8 6 6.3755 0.7236 -0.1715 9 6 7.7370 0.7662 -0.5619 10 6 8.9257 0.3488 0.0492 11 6 10.1183 0.5283 -0.5916 12 6 10.1646 1.1223 -1.8457 13 6 9.0078 1.5414 -2.4676 14 6 7.7813 1.3694 -1.8347 15 7 6.4855 1.6759 -2.1907 16 6 6.1002 2.2751 -3.3597 17 1 5.2166 1.9317 -3.8769 18 6 6.8466 3.3256 -3.8811 19 7 7.7250 3.9451 -3.1263 20 14 6.6057 3.8511 -5.6573 21 1 7.4390 2.9989 -6.5431 22 1 5.1756 3.7008 -6.0284 23 1 7.0107 5.2713 -5.8127 24 6 4.2370 1.4426 1.2696 25 6 3.7550 2.6077 2.1363 26 6 3.9862 0.1236 2.0032 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 5.9909 0.3225 0.7546 35 1 8.8994 -0.1133 1.0249 36 1 11.0339 0.2052 -0.1185 37 1 11.1158 1.2566 -2.3393 38 1 9.0539 2.0020 -3.4432 39 1 7.7667 3.7563 -2.1758 40 1 5.3036 1.5524 1.0738 41 1 2.6884 2.4980 2.3320 42 1 4.2993 2.6076 3.0807 43 1 3.9336 3.5475 1.6136 44 1 4.2244 -0.7103 1.3430 45 1 4.6169 0.0759 2.8908 46 1 2.9385 0.0655 2.2984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594094828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:35 Heat of formation + Delta-G solvation = 28.105064 kcal Electronic energy + Delta-G solvation = -27350.089368 eV Core-core repulsion = 23819.418515 eV Total energy + Delta-G solvation = -3530.670852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85453 -39.18940 -36.57174 -35.89308 -34.20266 -33.48805 -31.03907 -30.57227 -29.06955 -28.60506 -27.16597 -26.02242 -24.62942 -23.09384 -21.63798 -21.37923 -20.72336 -20.08097 -18.89670 -17.97926 -16.49218 -15.91058 -15.64903 -15.20407 -14.79602 -14.56465 -14.25577 -14.04380 -14.02437 -13.82429 -13.19231 -13.15902 -13.07552 -12.89964 -12.55020 -12.39200 -12.19381 -11.96621 -11.89589 -11.80652 -11.47388 -11.37733 -11.09671 -11.02143 -10.89823 -10.64987 -10.47624 -10.39339 -10.27540 -10.13280 -9.83997 -9.24719 -9.03211 -8.72674 -8.31404 -7.48766 -6.96614 -6.67911 -4.48011 1.73108 2.63006 2.99609 3.17469 3.22376 3.25316 3.39699 3.97462 4.13090 4.52237 4.74240 4.89016 4.95620 5.02392 5.06154 5.23716 5.27425 5.33426 5.48236 5.58488 5.63255 5.71051 5.73858 5.78910 5.85380 5.85919 5.91169 5.99027 6.01723 6.05825 6.18801 6.20319 6.23314 6.36205 6.41035 6.43680 6.56983 6.72792 6.86994 6.97918 7.01662 7.36003 7.44696 7.52328 7.72333 7.80506 7.87867 7.96628 8.25090 8.78032 8.89885 9.15533 10.21724 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.005659 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.300767 B = 4947.001055 C = 6619.636973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.118 3.882 4 N -0.604 5.604 5 C 0.590 3.410 6 O -0.533 6.533 7 C -0.019 4.019 8 C -0.225 4.225 9 C -0.119 4.119 10 C -0.090 4.090 11 C -0.153 4.153 12 C -0.145 4.145 13 C -0.069 4.069 14 C 0.052 3.948 15 N -0.238 5.238 16 C -0.409 4.409 17 H 0.114 0.886 18 C 0.020 3.980 19 N -0.835 5.835 20 Si 1.085 2.915 21 H -0.276 1.276 22 H -0.276 1.276 23 H -0.275 1.275 24 C 0.093 3.907 25 C -0.160 4.160 26 C -0.164 4.164 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.287 0.713 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 -4.736 9.334 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C -0.005 4.005 4 N -0.338 5.338 5 C 0.381 3.619 6 O -0.409 6.409 7 C -0.136 4.136 8 C -0.251 4.251 9 C -0.124 4.124 10 C -0.109 4.109 11 C -0.172 4.172 12 C -0.165 4.165 13 C -0.089 4.089 14 C -0.062 4.062 15 N 0.101 4.899 16 C -0.538 4.538 17 H 0.132 0.868 18 C -0.194 4.194 19 N -0.463 5.463 20 Si 0.908 3.092 21 H -0.202 1.202 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.010 4.010 25 C -0.218 4.218 26 C -0.223 4.223 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.152 0.848 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.657 -3.443 7.281 9.842 hybrid contribution -0.644 -0.989 1.395 1.827 sum -6.301 -4.432 8.676 11.602 Atomic orbital electron populations 1.21688 0.95590 1.01541 1.01703 1.22057 0.95691 0.97808 1.02763 1.21375 0.79726 0.96568 1.02806 1.47598 1.05711 1.75052 1.05446 1.17256 0.85783 0.75822 0.83052 1.90742 1.70015 1.49056 1.31095 1.19752 0.90788 1.12480 0.90606 1.20752 0.91646 1.13018 0.99713 1.17975 0.93319 1.05360 0.95732 1.20057 0.91195 1.00978 0.98703 1.20325 0.96730 1.03932 0.96258 1.20576 0.96665 1.03152 0.96146 1.20294 0.89565 0.99062 0.99977 1.18404 0.86276 1.04746 0.96728 1.40112 1.02731 1.35991 1.11072 1.21091 1.16777 1.17337 0.98552 0.86808 1.26939 0.92655 0.92015 1.07752 1.70579 1.30025 1.37152 1.08558 0.83278 0.77137 0.77135 0.71677 1.20161 1.20123 1.20034 1.22120 1.00813 0.94656 0.83364 1.22151 1.01158 0.98741 0.99785 1.22294 1.01793 0.97746 1.00418 0.92894 0.92593 0.92771 0.91708 0.91440 0.90852 0.90097 0.83839 0.87659 0.87701 0.87322 0.86164 0.90034 0.84794 0.92721 0.91575 0.92244 0.91922 0.91728 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.14 -1.84 6.02 -26.73 -0.16 -2.00 16 3 C 0.12 1.70 5.08 -4.04 -0.02 1.68 16 4 N -0.60 -10.32 2.40 -167.56 -0.40 -10.72 16 5 C 0.59 13.22 7.51 -12.76 -0.10 13.13 16 6 O -0.53 -13.58 14.77 5.22 0.08 -13.51 16 7 C -0.02 -0.44 6.42 -82.25 -0.53 -0.97 16 8 C -0.22 -4.73 8.44 -39.02 -0.33 -5.06 16 9 C -0.12 -2.68 6.16 -106.89 -0.66 -3.34 16 10 C -0.09 -1.76 10.06 -39.52 -0.40 -2.15 16 11 C -0.15 -2.87 9.97 -39.96 -0.40 -3.26 16 12 C -0.14 -2.95 10.02 -39.50 -0.40 -3.34 16 13 C -0.07 -1.65 8.41 -39.41 -0.33 -1.99 16 14 C 0.05 1.31 5.39 -83.84 -0.45 0.86 16 15 N -0.24 -6.34 2.61 -56.08 -0.15 -6.48 16 16 C -0.41 -11.31 8.97 -15.00 -0.13 -11.44 16 17 H 0.11 3.28 6.84 -52.49 -0.36 2.92 16 18 C 0.02 0.52 4.50 -17.47 -0.08 0.44 16 19 N -0.84 -22.93 11.74 55.50 0.65 -22.28 16 20 Si 1.08 23.16 29.95 -169.99 -5.09 18.07 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 C 0.09 1.33 2.50 -67.93 -0.17 1.16 16 25 C -0.16 -1.94 9.04 37.16 0.34 -1.60 16 26 C -0.16 -1.89 7.27 37.16 0.27 -1.62 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.79 5.57 -51.93 -0.29 0.50 16 32 H 0.07 0.87 6.12 -51.93 -0.32 0.56 16 33 H 0.08 1.32 7.34 -51.93 -0.38 0.94 16 34 H 0.14 2.49 4.49 -52.48 -0.24 2.25 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.02 6.61 -52.49 -0.35 2.67 16 39 H 0.29 8.25 6.72 -40.82 -0.27 7.97 16 40 H 0.14 2.21 3.66 -51.93 -0.19 2.02 16 41 H 0.05 0.58 6.49 -51.93 -0.34 0.24 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.79 7.80 -51.93 -0.40 0.39 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.60 6.53 -51.93 -0.34 0.26 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -30.55 357.81 -9.19 -39.74 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.50 Total: 10.45 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -3.18 Total: -20.66 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.10 Total: -39.49 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.09 Total: 18.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.55 -9.19 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594094828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.850 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds