Wall clock time and date at job start Tue Mar 31 2020 10:47:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52999 * 109.47115 * 2 1
4 4 N 1.46500 * 109.46975 * 179.97438 * 3 2 1
5 5 C 1.34774 * 119.99892 * 90.00560 * 4 3 2
6 6 O 1.21666 * 120.00131 * 7.19068 * 5 4 3
7 7 C 1.46891 * 119.99876 * 187.19538 * 5 4 3
8 8 C 1.36120 * 125.44113 * 21.84526 * 7 5 4
9 9 C 1.41703 * 107.75231 * 180.24429 * 8 7 5
10 10 C 1.40017 * 133.35151 * 179.81730 * 9 8 7
11 11 C 1.36572 * 119.82709 * 179.97438 * 10 9 8
12 12 C 1.38847 * 120.60544 * 0.02562 * 11 10 9
13 13 C 1.37852 * 120.63320 * 359.97438 * 12 11 10
14 14 C 1.39087 * 119.81025 * 0.02562 * 13 12 11
15 15 N 1.37830 * 133.16080 * 180.02562 * 14 13 12
16 16 C 1.36895 * 125.62298 * 359.93260 * 15 14 13
17 17 H 1.07995 * 120.00125 * 138.96602 * 16 15 14
18 18 C 1.39012 * 120.00011 * 318.97372 * 16 15 14
19 19 N 1.31346 * 119.99841 * 344.41012 * 18 16 15
20 20 Si 1.86797 * 120.00191 * 164.13912 * 18 16 15
21 21 H 1.48499 * 109.47059 * 275.29282 * 20 18 16
22 22 H 1.48503 * 109.46865 * 35.28789 * 20 18 16
23 23 H 1.48497 * 109.47217 * 155.28926 * 20 18 16
24 24 C 1.46496 * 120.00177 * 269.99994 * 4 3 2
25 25 C 1.53002 * 109.47240 * 306.13721 * 24 4 3
26 26 C 1.53002 * 109.47182 * 66.13491 * 24 4 3
27 27 H 1.08999 * 109.47339 * 300.00127 * 1 2 3
28 28 H 1.09006 * 109.47400 * 60.00041 * 1 2 3
29 29 H 1.09007 * 109.47408 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.47036 * 240.00230 * 2 1 3
31 31 H 1.08996 * 109.47371 * 120.00104 * 2 1 3
32 32 H 1.09004 * 109.46981 * 60.00197 * 3 2 1
33 33 H 1.08996 * 109.47086 * 300.00278 * 3 2 1
34 34 H 1.08004 * 126.12385 * 0.02562 * 8 7 5
35 35 H 1.07999 * 120.08367 * 359.94213 * 10 9 8
36 36 H 1.08007 * 119.69612 * 180.02562 * 11 10 9
37 37 H 1.08002 * 119.68892 * 180.02562 * 12 11 10
38 38 H 1.07993 * 120.09315 * 180.02562 * 13 12 11
39 39 H 0.96998 * 120.00140 * 351.42004 * 19 18 16
40 40 H 1.09003 * 109.47346 * 186.13727 * 24 4 3
41 41 H 1.08991 * 109.47264 * 59.99521 * 25 24 4
42 42 H 1.09003 * 109.47216 * 179.97438 * 25 24 4
43 43 H 1.09005 * 109.46732 * 299.99760 * 25 24 4
44 44 H 1.08997 * 109.47158 * 53.66233 * 26 24 4
45 45 H 1.08994 * 109.47372 * 173.66521 * 26 24 4
46 46 H 1.09007 * 109.46996 * 293.66493 * 26 24 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 0.0006
5 6 4.1793 1.4424 -1.1663
6 8 3.5786 1.5742 -2.2161
7 6 5.6395 1.2830 -1.1707
8 6 6.3755 0.7236 -0.1715
9 6 7.7370 0.7662 -0.5619
10 6 8.9257 0.3488 0.0492
11 6 10.1183 0.5283 -0.5916
12 6 10.1646 1.1223 -1.8457
13 6 9.0078 1.5414 -2.4676
14 6 7.7813 1.3694 -1.8347
15 7 6.4855 1.6759 -2.1907
16 6 6.1002 2.2751 -3.3597
17 1 5.2166 1.9317 -3.8769
18 6 6.8466 3.3256 -3.8811
19 7 7.7250 3.9451 -3.1263
20 14 6.6057 3.8511 -5.6573
21 1 7.4390 2.9989 -6.5431
22 1 5.1756 3.7008 -6.0284
23 1 7.0107 5.2713 -5.8127
24 6 4.2370 1.4426 1.2696
25 6 3.7550 2.6077 2.1363
26 6 3.9862 0.1236 2.0032
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0277 -0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8899
32 1 1.6766 1.9563 0.8900
33 1 1.6766 1.9563 -0.8899
34 1 5.9909 0.3225 0.7546
35 1 8.8994 -0.1133 1.0249
36 1 11.0339 0.2052 -0.1185
37 1 11.1158 1.2566 -2.3393
38 1 9.0539 2.0020 -3.4432
39 1 7.7667 3.7563 -2.1758
40 1 5.3036 1.5524 1.0738
41 1 2.6884 2.4980 2.3320
42 1 4.2993 2.6076 3.0807
43 1 3.9336 3.5475 1.6136
44 1 4.2244 -0.7103 1.3430
45 1 4.6169 0.0759 2.8908
46 1 2.9385 0.0655 2.2984
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594094828.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:35
Heat of formation + Delta-G solvation = 28.105064 kcal
Electronic energy + Delta-G solvation = -27350.089368 eV
Core-core repulsion = 23819.418515 eV
Total energy + Delta-G solvation = -3530.670852 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.85453 -39.18940 -36.57174 -35.89308 -34.20266 -33.48805 -31.03907 -30.57227
-29.06955 -28.60506 -27.16597 -26.02242 -24.62942 -23.09384 -21.63798 -21.37923
-20.72336 -20.08097 -18.89670 -17.97926 -16.49218 -15.91058 -15.64903 -15.20407
-14.79602 -14.56465 -14.25577 -14.04380 -14.02437 -13.82429 -13.19231 -13.15902
-13.07552 -12.89964 -12.55020 -12.39200 -12.19381 -11.96621 -11.89589 -11.80652
-11.47388 -11.37733 -11.09671 -11.02143 -10.89823 -10.64987 -10.47624 -10.39339
-10.27540 -10.13280 -9.83997 -9.24719 -9.03211 -8.72674 -8.31404 -7.48766
-6.96614 -6.67911 -4.48011 1.73108 2.63006 2.99609 3.17469 3.22376
3.25316 3.39699 3.97462 4.13090 4.52237 4.74240 4.89016 4.95620
5.02392 5.06154 5.23716 5.27425 5.33426 5.48236 5.58488 5.63255
5.71051 5.73858 5.78910 5.85380 5.85919 5.91169 5.99027 6.01723
6.05825 6.18801 6.20319 6.23314 6.36205 6.41035 6.43680 6.56983
6.72792 6.86994 6.97918 7.01662 7.36003 7.44696 7.52328 7.72333
7.80506 7.87867 7.96628 8.25090 8.78032 8.89885 9.15533 10.21724
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.012002 B = 0.005659 C = 0.004229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2332.300767 B = 4947.001055 C = 6619.636973
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.145 4.145
3 C 0.118 3.882
4 N -0.604 5.604
5 C 0.590 3.410
6 O -0.533 6.533
7 C -0.019 4.019
8 C -0.225 4.225
9 C -0.119 4.119
10 C -0.090 4.090
11 C -0.153 4.153
12 C -0.145 4.145
13 C -0.069 4.069
14 C 0.052 3.948
15 N -0.238 5.238
16 C -0.409 4.409
17 H 0.114 0.886
18 C 0.020 3.980
19 N -0.835 5.835
20 Si 1.085 2.915
21 H -0.276 1.276
22 H -0.276 1.276
23 H -0.275 1.275
24 C 0.093 3.907
25 C -0.160 4.160
26 C -0.164 4.164
27 H 0.052 0.948
28 H 0.055 0.945
29 H 0.053 0.947
30 H 0.064 0.936
31 H 0.067 0.933
32 H 0.073 0.927
33 H 0.081 0.919
34 H 0.144 0.856
35 H 0.105 0.895
36 H 0.105 0.895
37 H 0.109 0.891
38 H 0.120 0.880
39 H 0.287 0.713
40 H 0.135 0.865
41 H 0.054 0.946
42 H 0.065 0.935
43 H 0.058 0.942
44 H 0.062 0.938
45 H 0.064 0.936
46 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.791 -4.736 9.334 11.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.183 4.183
3 C -0.005 4.005
4 N -0.338 5.338
5 C 0.381 3.619
6 O -0.409 6.409
7 C -0.136 4.136
8 C -0.251 4.251
9 C -0.124 4.124
10 C -0.109 4.109
11 C -0.172 4.172
12 C -0.165 4.165
13 C -0.089 4.089
14 C -0.062 4.062
15 N 0.101 4.899
16 C -0.538 4.538
17 H 0.132 0.868
18 C -0.194 4.194
19 N -0.463 5.463
20 Si 0.908 3.092
21 H -0.202 1.202
22 H -0.201 1.201
23 H -0.200 1.200
24 C -0.010 4.010
25 C -0.218 4.218
26 C -0.223 4.223
27 H 0.071 0.929
28 H 0.074 0.926
29 H 0.072 0.928
30 H 0.083 0.917
31 H 0.086 0.914
32 H 0.091 0.909
33 H 0.099 0.901
34 H 0.162 0.838
35 H 0.123 0.877
36 H 0.123 0.877
37 H 0.127 0.873
38 H 0.138 0.862
39 H 0.100 0.900
40 H 0.152 0.848
41 H 0.073 0.927
42 H 0.084 0.916
43 H 0.078 0.922
44 H 0.081 0.919
45 H 0.083 0.917
46 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -5.657 -3.443 7.281 9.842
hybrid contribution -0.644 -0.989 1.395 1.827
sum -6.301 -4.432 8.676 11.602
Atomic orbital electron populations
1.21688 0.95590 1.01541 1.01703 1.22057 0.95691 0.97808 1.02763
1.21375 0.79726 0.96568 1.02806 1.47598 1.05711 1.75052 1.05446
1.17256 0.85783 0.75822 0.83052 1.90742 1.70015 1.49056 1.31095
1.19752 0.90788 1.12480 0.90606 1.20752 0.91646 1.13018 0.99713
1.17975 0.93319 1.05360 0.95732 1.20057 0.91195 1.00978 0.98703
1.20325 0.96730 1.03932 0.96258 1.20576 0.96665 1.03152 0.96146
1.20294 0.89565 0.99062 0.99977 1.18404 0.86276 1.04746 0.96728
1.40112 1.02731 1.35991 1.11072 1.21091 1.16777 1.17337 0.98552
0.86808 1.26939 0.92655 0.92015 1.07752 1.70579 1.30025 1.37152
1.08558 0.83278 0.77137 0.77135 0.71677 1.20161 1.20123 1.20034
1.22120 1.00813 0.94656 0.83364 1.22151 1.01158 0.98741 0.99785
1.22294 1.01793 0.97746 1.00418 0.92894 0.92593 0.92771 0.91708
0.91440 0.90852 0.90097 0.83839 0.87659 0.87701 0.87322 0.86164
0.90034 0.84794 0.92721 0.91575 0.92244 0.91922 0.91728 0.92351
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16
2 C -0.14 -1.84 6.02 -26.73 -0.16 -2.00 16
3 C 0.12 1.70 5.08 -4.04 -0.02 1.68 16
4 N -0.60 -10.32 2.40 -167.56 -0.40 -10.72 16
5 C 0.59 13.22 7.51 -12.76 -0.10 13.13 16
6 O -0.53 -13.58 14.77 5.22 0.08 -13.51 16
7 C -0.02 -0.44 6.42 -82.25 -0.53 -0.97 16
8 C -0.22 -4.73 8.44 -39.02 -0.33 -5.06 16
9 C -0.12 -2.68 6.16 -106.89 -0.66 -3.34 16
10 C -0.09 -1.76 10.06 -39.52 -0.40 -2.15 16
11 C -0.15 -2.87 9.97 -39.96 -0.40 -3.26 16
12 C -0.14 -2.95 10.02 -39.50 -0.40 -3.34 16
13 C -0.07 -1.65 8.41 -39.41 -0.33 -1.99 16
14 C 0.05 1.31 5.39 -83.84 -0.45 0.86 16
15 N -0.24 -6.34 2.61 -56.08 -0.15 -6.48 16
16 C -0.41 -11.31 8.97 -15.00 -0.13 -11.44 16
17 H 0.11 3.28 6.84 -52.49 -0.36 2.92 16
18 C 0.02 0.52 4.50 -17.47 -0.08 0.44 16
19 N -0.84 -22.93 11.74 55.50 0.65 -22.28 16
20 Si 1.08 23.16 29.95 -169.99 -5.09 18.07 16
21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16
22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16
23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16
24 C 0.09 1.33 2.50 -67.93 -0.17 1.16 16
25 C -0.16 -1.94 9.04 37.16 0.34 -1.60 16
26 C -0.16 -1.89 7.27 37.16 0.27 -1.62 16
27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
31 H 0.07 0.79 5.57 -51.93 -0.29 0.50 16
32 H 0.07 0.87 6.12 -51.93 -0.32 0.56 16
33 H 0.08 1.32 7.34 -51.93 -0.38 0.94 16
34 H 0.14 2.49 4.49 -52.48 -0.24 2.25 16
35 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16
36 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16
37 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16
38 H 0.12 3.02 6.61 -52.49 -0.35 2.67 16
39 H 0.29 8.25 6.72 -40.82 -0.27 7.97 16
40 H 0.14 2.21 3.66 -51.93 -0.19 2.02 16
41 H 0.05 0.58 6.49 -51.93 -0.34 0.24 16
42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
44 H 0.06 0.79 7.80 -51.93 -0.40 0.39 16
45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
46 H 0.06 0.60 6.53 -51.93 -0.34 0.26 16
LS Contribution 357.81 15.07 5.39 5.39
Total: -1.00 -30.55 357.81 -9.19 -39.74
By element:
Atomic # 1 Polarization: 16.95 SS G_CDS: -6.50 Total: 10.45 kcal
Atomic # 6 Polarization: -17.48 SS G_CDS: -3.18 Total: -20.66 kcal
Atomic # 7 Polarization: -39.59 SS G_CDS: 0.10 Total: -39.49 kcal
Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.51 kcal
Atomic # 14 Polarization: 23.16 SS G_CDS: -5.09 Total: 18.07 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -30.55 -9.19 -39.74 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594094828.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.850 kcal
(2) G-P(sol) polarization free energy of solvation -30.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds