Wall clock time and date at job start Tue Mar 31 2020 10:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47115 * 2 1 4 4 N 1.46500 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.34774 * 119.99892 * 90.00560 * 4 3 2 6 6 O 1.21666 * 120.00131 * 7.19068 * 5 4 3 7 7 C 1.46891 * 119.99876 * 187.19538 * 5 4 3 8 8 C 1.36120 * 125.44113 * 21.84526 * 7 5 4 9 9 C 1.41703 * 107.75231 * 180.24429 * 8 7 5 10 10 C 1.40017 * 133.35151 * 179.81730 * 9 8 7 11 11 C 1.36572 * 119.82709 * 179.97438 * 10 9 8 12 12 C 1.38847 * 120.60544 * 0.02562 * 11 10 9 13 13 C 1.37852 * 120.63320 * 359.97438 * 12 11 10 14 14 C 1.39087 * 119.81025 * 0.02562 * 13 12 11 15 15 N 1.37830 * 133.16080 * 180.02562 * 14 13 12 16 16 C 1.36895 * 125.62298 * 359.93260 * 15 14 13 17 17 H 1.07995 * 120.00125 * 138.96602 * 16 15 14 18 18 C 1.39012 * 120.00011 * 318.97372 * 16 15 14 19 19 N 1.31346 * 119.99841 * 344.41012 * 18 16 15 20 20 Si 1.86797 * 120.00191 * 164.13912 * 18 16 15 21 21 H 1.48499 * 109.47059 * 275.29282 * 20 18 16 22 22 H 1.48503 * 109.46865 * 35.28789 * 20 18 16 23 23 H 1.48497 * 109.47217 * 155.28926 * 20 18 16 24 24 C 1.46496 * 120.00177 * 269.99994 * 4 3 2 25 25 C 1.53002 * 109.47240 * 306.13721 * 24 4 3 26 26 C 1.53002 * 109.47182 * 66.13491 * 24 4 3 27 27 H 1.08999 * 109.47339 * 300.00127 * 1 2 3 28 28 H 1.09006 * 109.47400 * 60.00041 * 1 2 3 29 29 H 1.09007 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47036 * 240.00230 * 2 1 3 31 31 H 1.08996 * 109.47371 * 120.00104 * 2 1 3 32 32 H 1.09004 * 109.46981 * 60.00197 * 3 2 1 33 33 H 1.08996 * 109.47086 * 300.00278 * 3 2 1 34 34 H 1.08004 * 126.12385 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.08367 * 359.94213 * 10 9 8 36 36 H 1.08007 * 119.69612 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.68892 * 180.02562 * 12 11 10 38 38 H 1.07993 * 120.09315 * 180.02562 * 13 12 11 39 39 H 0.96998 * 120.00140 * 351.42004 * 19 18 16 40 40 H 1.09003 * 109.47346 * 186.13727 * 24 4 3 41 41 H 1.08991 * 109.47264 * 59.99521 * 25 24 4 42 42 H 1.09003 * 109.47216 * 179.97438 * 25 24 4 43 43 H 1.09005 * 109.46732 * 299.99760 * 25 24 4 44 44 H 1.08997 * 109.47158 * 53.66233 * 26 24 4 45 45 H 1.08994 * 109.47372 * 173.66521 * 26 24 4 46 46 H 1.09007 * 109.46996 * 293.66493 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1793 1.4424 -1.1663 6 8 3.5786 1.5742 -2.2161 7 6 5.6395 1.2830 -1.1707 8 6 6.3755 0.7236 -0.1715 9 6 7.7370 0.7662 -0.5619 10 6 8.9257 0.3488 0.0492 11 6 10.1183 0.5283 -0.5916 12 6 10.1646 1.1223 -1.8457 13 6 9.0078 1.5414 -2.4676 14 6 7.7813 1.3694 -1.8347 15 7 6.4855 1.6759 -2.1907 16 6 6.1002 2.2751 -3.3597 17 1 5.2166 1.9317 -3.8769 18 6 6.8466 3.3256 -3.8811 19 7 7.7250 3.9451 -3.1263 20 14 6.6057 3.8511 -5.6573 21 1 7.4390 2.9989 -6.5431 22 1 5.1756 3.7008 -6.0284 23 1 7.0107 5.2713 -5.8127 24 6 4.2370 1.4426 1.2696 25 6 3.7550 2.6077 2.1363 26 6 3.9862 0.1236 2.0032 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 5.9909 0.3225 0.7546 35 1 8.8994 -0.1133 1.0249 36 1 11.0339 0.2052 -0.1185 37 1 11.1158 1.2566 -2.3393 38 1 9.0539 2.0020 -3.4432 39 1 7.7667 3.7563 -2.1758 40 1 5.3036 1.5524 1.0738 41 1 2.6884 2.4980 2.3320 42 1 4.2993 2.6076 3.0807 43 1 3.9336 3.5475 1.6136 44 1 4.2244 -0.7103 1.3430 45 1 4.6169 0.0759 2.8908 46 1 2.9385 0.0655 2.2984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594094828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:34 Heat of formation + Delta-G solvation = 11.995347 kcal Electronic energy + Delta-G solvation = -27350.787938 eV Core-core repulsion = 23819.418515 eV Total energy + Delta-G solvation = -3531.369422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56729 -40.73180 -38.10609 -37.56148 -35.82971 -34.79299 -32.38201 -32.28489 -30.77950 -30.17840 -28.13925 -27.31612 -26.52395 -24.61500 -22.98708 -22.77176 -22.22791 -21.74256 -20.48479 -19.62812 -18.02829 -17.50846 -17.43850 -16.71895 -16.39687 -15.95441 -15.87085 -15.53084 -15.35270 -15.27954 -14.80383 -14.70227 -14.38706 -14.20434 -14.04241 -13.74711 -13.52673 -13.38398 -13.02098 -12.90740 -12.84565 -12.55929 -12.45358 -12.41340 -12.23834 -12.15544 -12.03024 -11.99841 -11.68651 -11.52049 -11.40884 -11.03953 -10.86204 -10.43346 -9.73168 -9.40044 -8.79137 -8.46718 -6.52912 0.03562 0.96780 1.28440 1.39047 1.49614 1.68209 1.79206 2.23028 2.37848 2.77460 2.92214 3.20162 3.61480 3.87350 3.99647 4.03419 4.12107 4.23305 4.32310 4.33601 4.37496 4.44667 4.50016 4.60134 4.65509 4.71016 4.76085 4.80354 4.86608 4.90380 4.97228 5.04334 5.08540 5.10957 5.15837 5.20864 5.21869 5.30922 5.38393 5.44826 5.47876 5.70488 5.74632 5.77350 5.84061 6.08872 6.11258 6.38760 6.46106 6.90788 7.16754 7.28018 8.15733 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.005659 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.300767 B = 4947.001055 C = 6619.636973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.113 3.887 4 N -0.590 5.590 5 C 0.578 3.422 6 O -0.582 6.582 7 C -0.049 4.049 8 C -0.191 4.191 9 C -0.144 4.144 10 C -0.078 4.078 11 C -0.152 4.152 12 C -0.124 4.124 13 C -0.116 4.116 14 C 0.033 3.967 15 N -0.278 5.278 16 C -0.437 4.437 17 H 0.083 0.917 18 C -0.014 4.014 19 N -0.854 5.854 20 Si 1.127 2.873 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.266 1.266 24 C 0.084 3.916 25 C -0.155 4.155 26 C -0.158 4.158 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.185 0.815 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.267 0.733 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.034 0.966 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.223 -6.365 13.341 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.008 4.008 4 N -0.322 5.322 5 C 0.369 3.631 6 O -0.463 6.463 7 C -0.165 4.165 8 C -0.217 4.217 9 C -0.149 4.149 10 C -0.097 4.097 11 C -0.170 4.170 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.080 4.080 15 N 0.059 4.941 16 C -0.565 4.565 17 H 0.101 0.899 18 C -0.221 4.221 19 N -0.483 5.483 20 Si 0.944 3.056 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.190 1.190 24 C -0.017 4.017 25 C -0.213 4.213 26 C -0.216 4.216 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.202 0.798 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.155 0.845 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.112 0.888 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.109 -5.089 11.349 13.446 hybrid contribution -0.766 -0.629 0.417 1.075 sum -5.875 -5.717 11.766 14.340 Atomic orbital electron populations 1.21666 0.93367 1.02626 1.02379 1.21985 0.97547 0.95987 1.01965 1.21627 0.77978 0.98123 1.03107 1.47745 1.06893 1.72632 1.04938 1.17458 0.85658 0.75919 0.84071 1.90699 1.70669 1.51718 1.33217 1.20379 0.91765 1.12801 0.91514 1.21251 0.90887 1.09848 0.99725 1.18487 0.95135 1.06158 0.95096 1.20577 0.89886 0.99130 1.00062 1.20839 0.98495 1.02513 0.95202 1.21044 0.96405 1.00323 0.96664 1.20313 0.90868 1.02370 1.00063 1.18951 0.86188 1.04786 0.98098 1.40233 1.03758 1.38368 1.11749 1.20858 1.16734 1.18593 1.00296 0.89905 1.28207 0.91940 0.91312 1.10633 1.70687 1.31888 1.38242 1.07460 0.82797 0.77358 0.77419 0.67985 1.18384 1.19936 1.19035 1.22323 0.99196 0.97768 0.82433 1.22125 1.02903 0.96232 0.99998 1.22256 1.03848 0.94822 1.00650 0.90508 0.93651 0.91501 0.95189 0.89455 0.87277 0.92967 0.79844 0.83180 0.82875 0.84539 0.88971 0.92185 0.87256 0.90602 0.88793 0.94714 0.93180 0.88829 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.91 71.98 0.71 -1.94 16 2 C -0.14 -3.33 6.02 30.59 0.18 -3.14 16 3 C 0.11 3.21 5.08 86.38 0.44 3.65 16 4 N -0.59 -20.27 2.40 -802.28 -1.92 -22.20 16 5 C 0.58 27.53 7.51 86.51 0.65 28.18 16 6 O -0.58 -32.43 14.77 -4.24 -0.06 -32.49 16 7 C -0.05 -2.46 6.42 39.91 0.26 -2.21 16 8 C -0.19 -7.95 8.44 22.63 0.19 -7.76 16 9 C -0.14 -6.38 6.16 -21.34 -0.13 -6.51 16 10 C -0.08 -2.73 10.06 22.31 0.22 -2.51 16 11 C -0.15 -5.04 9.97 22.03 0.22 -4.82 16 12 C -0.12 -4.86 10.02 22.32 0.22 -4.64 16 13 C -0.12 -5.74 8.41 22.38 0.19 -5.55 16 14 C 0.03 1.74 5.39 39.06 0.21 1.95 16 15 N -0.28 -15.85 2.61 -331.34 -0.86 -16.71 16 16 C -0.44 -26.42 8.97 84.09 0.75 -25.67 16 17 H 0.08 5.33 6.84 -2.91 -0.02 5.31 16 18 C -0.01 -0.78 4.50 84.95 0.38 -0.40 16 19 N -0.85 -50.13 11.74 21.67 0.25 -49.88 16 20 Si 1.13 49.90 29.95 68.60 2.05 51.95 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 C 0.08 2.23 2.50 44.99 0.11 2.34 16 25 C -0.15 -3.28 9.04 71.98 0.65 -2.62 16 26 C -0.16 -2.96 7.27 71.98 0.52 -2.44 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 1.77 5.57 -2.39 -0.01 1.76 16 32 H 0.11 2.30 6.12 -2.38 -0.01 2.29 16 33 H 0.05 1.80 7.34 -2.39 -0.02 1.78 16 34 H 0.18 5.90 4.49 -2.91 -0.01 5.89 16 35 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 38 H 0.09 4.98 6.61 -2.91 -0.02 4.96 16 39 H 0.27 16.51 6.72 -92.71 -0.62 15.88 16 40 H 0.11 3.43 3.66 -2.39 -0.01 3.42 16 41 H 0.08 1.29 6.49 -2.39 -0.02 1.27 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.05 1.09 7.80 -2.39 -0.02 1.07 16 45 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 1.19 6.53 -2.38 -0.02 1.18 16 Total: -1.00 -76.98 357.81 6.38 -70.60 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 1.14 Total: 32.81 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 5.79 Total: -34.09 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -2.53 Total: -88.79 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.06 Total: -32.49 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Total: -76.98 6.38 -70.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594094828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.593 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds