Wall clock time and date at job start Tue Mar 31 2020 12:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.33435 * 2 1 4 4 C 1.54906 * 110.37310 * 122.37258 * 2 1 3 5 5 C 1.55140 * 101.65459 * 155.90014 * 4 2 1 6 6 H 1.08999 * 110.70531 * 82.72830 * 5 4 2 7 7 N 1.46502 * 110.70623 * 205.96405 * 5 4 2 8 8 C 1.34771 * 120.00103 * 200.05247 * 7 5 4 9 9 O 1.21617 * 119.99982 * 359.97438 * 8 7 5 10 10 C 1.47432 * 120.00416 * 180.02562 * 8 7 5 11 11 C 1.39227 * 120.28007 * 355.56419 * 10 8 7 12 12 C 1.38219 * 120.09221 * 179.71948 * 11 10 8 13 13 C 1.38827 * 120.67315 * 0.56435 * 12 11 10 14 14 C 1.37591 * 120.57210 * 359.71498 * 13 12 11 15 15 C 1.40705 * 119.88092 * 0.02562 * 14 13 12 16 16 C 1.40894 * 120.32822 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00334 * 141.36980 * 16 15 14 18 18 C 1.40278 * 119.99907 * 321.37526 * 16 15 14 19 19 N 1.30627 * 120.00067 * 173.97144 * 18 16 15 20 20 Si 1.86798 * 119.99815 * 353.96622 * 18 16 15 21 21 H 1.48509 * 109.46842 * 89.39115 * 20 18 16 22 22 H 1.48497 * 109.47250 * 209.38533 * 20 18 16 23 23 H 1.48499 * 109.47441 * 329.39143 * 20 18 16 24 24 C 1.54316 * 103.01806 * 324.34630 * 5 4 2 25 25 N 1.47452 * 107.23444 * 22.28276 * 24 5 4 26 26 C 1.46897 * 110.99921 * 123.25567 * 25 24 5 27 27 C 1.53004 * 117.49469 * 127.77503 * 26 25 24 28 28 C 1.52994 * 60.00314 * 252.51429 * 27 26 25 29 29 H 1.08995 * 109.46968 * 182.25683 * 1 2 3 30 30 H 1.09006 * 109.46907 * 62.25393 * 1 2 3 31 31 H 1.08998 * 109.47247 * 302.25680 * 1 2 3 32 32 H 1.09003 * 110.99156 * 273.99373 * 4 2 1 33 33 H 1.08999 * 110.99203 * 37.80500 * 4 2 1 34 34 H 0.96996 * 119.99709 * 20.04888 * 7 5 4 35 35 H 1.08009 * 119.94861 * 359.97438 * 11 10 8 36 36 H 1.08004 * 119.66181 * 180.30241 * 12 11 10 37 37 H 1.08001 * 119.71224 * 179.69446 * 13 12 11 38 38 H 1.07996 * 120.05814 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00160 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.88982 * 262.87855 * 24 5 4 41 41 H 1.08997 * 110.02565 * 141.76242 * 24 5 4 42 42 H 1.08997 * 115.55311 * 273.49374 * 26 25 24 43 43 H 1.08997 * 117.50014 * 0.02562 * 27 26 25 44 44 H 1.09000 * 117.49247 * 145.01899 * 27 26 25 45 45 H 1.09004 * 117.49906 * 252.51159 * 28 27 26 46 46 H 1.09001 * 117.49636 * 107.49405 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0693 -0.7775 1.2265 5 6 3.4786 -1.2003 0.7346 6 1 4.1942 -0.3897 0.8726 7 7 3.9266 -2.4119 1.4258 8 6 5.2379 -2.7210 1.4623 9 8 6.0492 -1.9944 0.9211 10 6 5.6887 -3.9405 2.1574 11 6 4.7775 -4.7279 2.8560 12 6 5.2034 -5.8736 3.5014 13 6 6.5401 -6.2474 3.4724 14 6 7.4650 -5.4865 2.7952 15 6 7.0565 -4.3185 2.1254 16 6 7.9958 -3.5321 1.4294 17 1 7.7275 -3.0782 0.4869 18 6 9.2796 -3.3387 1.9606 19 7 10.1873 -2.7097 1.2629 20 14 9.6911 -3.9804 3.6660 21 1 10.2001 -5.3716 3.5619 22 1 10.7310 -3.1177 4.2819 23 1 8.4693 -3.9622 4.5099 24 6 3.2536 -1.4799 -0.7662 25 7 2.0447 -0.7396 -1.1721 26 6 2.3357 0.1741 -2.2849 27 6 1.4421 0.0857 -3.5236 28 6 2.8786 -0.4379 -3.5779 29 1 -0.3633 -1.0268 0.0405 30 1 -0.3633 0.4785 -0.9096 31 1 -0.3633 0.5485 0.8690 32 1 2.1388 -0.1293 2.1001 33 1 1.4515 -1.6502 1.4381 34 1 3.2795 -2.9915 1.8571 35 1 3.7356 -4.4452 2.8902 36 1 4.4897 -6.4819 4.0372 37 1 6.8567 -7.1430 3.9863 38 1 8.5028 -5.7849 2.7784 39 1 11.0749 -2.5757 1.6303 40 1 3.1056 -2.5479 -0.9263 41 1 4.1113 -1.1340 -1.3430 42 1 2.7059 1.1589 -2.0001 43 1 0.6380 -0.6501 -3.5127 44 1 1.2239 1.0127 -4.0539 45 1 3.6056 0.1446 -4.1439 46 1 3.0198 -1.5185 -3.6028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601299463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:37 Heat of formation + Delta-G solvation = 19.152061 kcal Electronic energy + Delta-G solvation = -26155.746132 eV Core-core repulsion = 22624.687048 eV Total energy + Delta-G solvation = -3531.059084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.88928 -38.72871 -37.07408 -36.06456 -33.89365 -33.29781 -31.05323 -30.48318 -30.33157 -28.63275 -25.66679 -25.28846 -22.89044 -22.36966 -21.81713 -21.08421 -20.71529 -19.89069 -19.26991 -17.58540 -16.93165 -16.44324 -15.99689 -15.32342 -15.14401 -14.61619 -14.18808 -14.10358 -13.88753 -13.74867 -13.52464 -13.22811 -12.75702 -12.65173 -12.56359 -12.29070 -12.17122 -11.97838 -11.80642 -11.60293 -11.55303 -11.22042 -11.17318 -10.96340 -10.74637 -10.70203 -10.45494 -10.39513 -10.15447 -10.07401 -9.80213 -9.27286 -8.63280 -8.52308 -8.22048 -7.83767 -7.59828 -6.88043 -4.47250 2.08166 2.58280 3.08553 3.17253 3.28087 3.56338 3.78713 3.90461 3.95655 3.98493 4.56139 4.59453 4.72302 4.85916 4.91771 4.98914 5.20517 5.28363 5.30575 5.37828 5.39565 5.50474 5.58943 5.70062 5.76215 5.77565 5.79897 5.84979 5.91206 5.96306 6.00201 6.10996 6.13923 6.17790 6.25318 6.40975 6.48705 6.78007 6.89988 7.07899 7.11056 7.12890 7.22172 7.36821 7.56371 7.73267 7.99318 8.30532 8.47859 8.61804 8.83133 9.32771 10.10190 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.003552 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.802921 B = 7880.049431 C = 8772.868394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.073 3.927 3 H 0.057 0.943 4 C -0.132 4.132 5 C 0.134 3.866 6 H 0.089 0.911 7 N -0.738 5.738 8 C 0.561 3.439 9 O -0.524 6.524 10 C -0.247 4.247 11 C -0.042 4.042 12 C -0.252 4.252 13 C -0.066 4.066 14 C -0.226 4.226 15 C 0.119 3.881 16 C -0.397 4.397 17 H 0.115 0.885 18 C 0.079 3.921 19 N -0.798 5.798 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.243 1.243 24 C 0.034 3.966 25 N -0.497 5.497 26 C 0.001 3.999 27 C -0.164 4.164 28 C -0.173 4.173 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.393 0.607 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.286 0.714 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.544 3.966 -1.868 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.035 4.035 3 H 0.075 0.925 4 C -0.171 4.171 5 C 0.027 3.973 6 H 0.107 0.893 7 N -0.392 5.392 8 C 0.354 3.646 9 O -0.400 6.400 10 C -0.251 4.251 11 C -0.061 4.061 12 C -0.271 4.271 13 C -0.084 4.084 14 C -0.245 4.245 15 C 0.114 3.886 16 C -0.425 4.425 17 H 0.133 0.867 18 C -0.141 4.141 19 N -0.422 5.422 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.217 1.217 23 H -0.167 1.167 24 C -0.094 4.094 25 N -0.222 5.222 26 C -0.108 4.108 27 C -0.202 4.202 28 C -0.211 4.211 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.227 0.773 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.031 4.297 -2.527 15.836 hybrid contribution 0.654 0.002 1.177 1.346 sum -14.377 4.299 -1.350 15.067 Atomic orbital electron populations 1.21669 0.93796 1.02253 1.01222 1.22498 0.96102 0.95986 0.88943 0.92508 1.23055 0.95653 1.00795 0.97571 1.21914 0.95008 0.89052 0.91323 0.89253 1.45961 1.08541 1.25924 1.58810 1.18393 0.80801 0.85730 0.79706 1.90770 1.52193 1.51647 1.45422 1.19448 0.95573 0.98543 1.11570 1.20788 0.96537 0.93946 0.94834 1.20306 0.95526 1.00956 1.10358 1.20749 0.93607 0.97616 0.96462 1.21198 0.98578 0.97612 1.07105 1.17559 0.91400 0.90713 0.88944 1.19960 0.92972 1.22698 1.06825 0.86699 1.26301 0.94990 0.93002 0.99797 1.69545 1.04159 1.30676 1.37781 0.86398 0.79326 0.78353 0.82518 1.19415 1.21706 1.16659 1.23266 0.91040 0.99554 0.95558 1.63343 1.28598 1.24319 1.05894 1.22622 1.04682 0.96146 0.87333 1.23025 0.94283 1.02748 1.00135 1.23038 0.96916 1.01688 0.99432 0.92052 0.92581 0.92555 0.90307 0.90073 0.77254 0.88649 0.88482 0.88530 0.87674 0.90321 0.90147 0.91668 0.89424 0.88347 0.89113 0.88734 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.59 37.16 0.36 -0.83 16 2 C 0.07 0.79 3.05 -66.19 -0.20 0.59 16 3 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 4 C -0.13 -1.49 6.10 -24.59 -0.15 -1.64 16 5 C 0.13 2.01 3.23 -66.11 -0.21 1.80 16 6 H 0.09 1.54 7.70 -51.93 -0.40 1.14 16 7 N -0.74 -12.47 5.08 -53.11 -0.27 -12.74 16 8 C 0.56 12.53 7.72 -12.52 -0.10 12.43 16 9 O -0.52 -13.76 13.38 5.26 0.07 -13.69 16 10 C -0.25 -5.71 5.92 -104.37 -0.62 -6.33 16 11 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16 12 C -0.25 -4.89 10.03 -39.37 -0.39 -5.28 16 13 C -0.07 -1.36 10.01 -39.60 -0.40 -1.75 16 14 C -0.23 -5.31 6.96 -38.89 -0.27 -5.58 16 15 C 0.12 3.04 5.03 -106.54 -0.54 2.50 16 16 C -0.40 -11.14 8.10 -37.81 -0.31 -11.45 16 17 H 0.12 3.56 6.33 -52.49 -0.33 3.23 16 18 C 0.08 2.11 5.50 -17.30 -0.10 2.02 16 19 N -0.80 -21.88 13.92 55.56 0.77 -21.10 16 20 Si 0.91 20.88 24.49 -169.99 -4.16 16.71 16 21 H -0.27 -5.85 6.70 56.52 0.38 -5.47 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.24 -5.72 6.70 56.52 0.38 -5.35 16 24 C 0.03 0.51 6.30 -2.83 -0.02 0.49 16 25 N -0.50 -6.15 4.98 -215.47 -1.07 -7.22 16 26 C 0.00 0.02 5.03 -67.71 -0.34 -0.32 16 27 C -0.16 -1.60 10.46 -26.73 -0.28 -1.88 16 28 C -0.17 -1.91 9.60 -26.73 -0.26 -2.17 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 34 H 0.39 5.64 6.57 -40.82 -0.27 5.37 16 35 H 0.10 1.51 6.42 -52.48 -0.34 1.17 16 36 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 37 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.11 2.44 4.93 -52.49 -0.26 2.18 16 39 H 0.29 7.06 8.29 -40.82 -0.34 6.73 16 40 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 41 H 0.06 1.08 7.21 -51.93 -0.37 0.70 16 42 H 0.09 0.99 7.74 -51.93 -0.40 0.59 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -29.80 364.39 -10.36 -40.16 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.00 Total: 11.00 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -4.19 Total: -18.61 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.57 Total: -41.06 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.07 Total: -13.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.16 Total: 16.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.80 -10.36 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601299463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.311 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds