Wall clock time and date at job start Tue Mar 31 2020 10:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47390 * 2 1 4 4 H 1.09003 * 109.46914 * 304.90169 * 3 2 1 5 5 C 1.50697 * 109.47192 * 184.90242 * 3 2 1 6 6 H 1.08006 * 119.99519 * 245.45260 * 5 3 2 7 7 C 1.37872 * 120.00064 * 65.45038 * 5 3 2 8 8 N 1.31513 * 120.00258 * 9.47556 * 7 5 3 9 9 Si 1.86800 * 119.99925 * 189.47059 * 7 5 3 10 10 H 1.48497 * 109.47329 * 84.99407 * 9 7 5 11 11 H 1.48505 * 109.47207 * 204.99716 * 9 7 5 12 12 H 1.48497 * 109.47095 * 324.99479 * 9 7 5 13 13 N 1.46497 * 109.46995 * 64.89779 * 3 2 1 14 14 C 1.34770 * 120.00485 * 275.00457 * 13 3 2 15 15 O 1.21649 * 119.99826 * 359.97438 * 14 13 3 16 16 C 1.47058 * 120.00185 * 180.02562 * 14 13 3 17 17 C 1.35879 * 125.42940 * 180.02562 * 16 14 13 18 18 C 1.41587 * 107.72178 * 179.97438 * 17 16 14 19 19 C 1.40098 * 133.37356 * 179.97438 * 18 17 16 20 20 C 1.36430 * 119.83337 * 180.02562 * 19 18 17 21 21 C 1.38939 * 120.61473 * 0.25331 * 20 19 18 22 22 C 1.50698 * 119.67972 * 179.74459 * 21 20 19 23 23 C 1.52998 * 109.47099 * 300.00233 * 22 21 20 24 24 C 1.53008 * 109.47177 * 60.00223 * 22 21 20 25 25 C 1.37679 * 120.64867 * 359.46677 * 21 20 19 26 26 C 1.39232 * 119.80417 * 0.54726 * 25 21 20 27 27 N 1.37473 * 133.18121 * 179.73098 * 26 25 21 28 28 H 0.97006 * 125.60196 * 359.96403 * 27 26 25 29 29 H 1.08999 * 109.46743 * 59.99842 * 1 2 3 30 30 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46797 * 300.00241 * 1 2 3 32 32 H 1.08998 * 109.46797 * 239.99759 * 2 1 3 33 33 H 1.08999 * 109.46743 * 120.00158 * 2 1 3 34 34 H 0.96998 * 120.00449 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99850 * 94.99716 * 13 3 2 36 36 H 1.07996 * 126.13678 * 359.97015 * 17 16 14 37 37 H 1.08005 * 120.08717 * 0.02562 * 19 18 17 38 38 H 1.08004 * 119.69720 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47362 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47002 * 299.99306 * 23 22 21 41 41 H 1.08992 * 109.47072 * 60.00060 * 23 22 21 42 42 H 1.09005 * 109.46727 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.46606 * 59.99676 * 24 22 21 44 44 H 1.09000 * 109.47103 * 180.02562 * 24 22 21 45 45 H 1.09001 * 109.46973 * 300.00236 * 24 22 21 46 46 H 1.07998 * 120.09458 * 180.26443 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6068 1.9810 -0.8429 5 6 3.5422 1.4441 -0.1214 6 1 4.1494 1.8090 0.6939 7 6 4.1412 0.9800 -1.2732 8 7 3.4097 0.7115 -2.3326 9 14 5.9919 0.7326 -1.3289 10 1 6.3290 -0.6068 -0.7835 11 1 6.4619 0.8273 -2.7345 12 1 6.6562 1.7807 -0.5132 13 7 1.6505 2.0982 1.2507 14 6 0.4330 2.6651 1.3636 15 8 -0.3422 2.6328 0.4267 16 6 0.0422 3.3238 2.6190 17 6 -1.1524 3.9277 2.8530 18 6 -1.1279 4.4336 4.1751 19 6 -2.0566 5.1367 4.9536 20 6 -1.7369 5.4984 6.2297 21 6 -0.4948 5.1808 6.7651 22 6 -0.1618 5.5958 8.1750 23 6 -0.2403 7.1194 8.2902 24 6 -1.1606 4.9589 9.1435 25 6 0.4327 4.4855 6.0222 26 6 0.1301 4.1057 4.7173 27 7 0.8304 3.4264 3.7488 28 1 1.7305 3.0771 3.8431 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8312 0.3853 -3.1431 35 1 2.2687 2.1242 1.9978 36 1 -1.9731 4.0074 2.1556 37 1 -3.0231 5.3917 4.5447 38 1 -2.4544 6.0408 6.8277 39 1 0.8467 5.2645 8.4227 40 1 0.4714 7.5730 7.6003 41 1 -1.2485 7.4510 8.0424 42 1 0.0002 7.4195 9.3102 43 1 -1.1047 3.8735 9.0614 44 1 -0.9200 5.2595 10.1633 45 1 -2.1689 5.2906 8.8957 46 1 1.3939 4.2396 6.4488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762722270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:32 Heat of formation + Delta-G solvation = -5.164086 kcal Electronic energy + Delta-G solvation = -25461.723971 eV Core-core repulsion = 21929.610460 eV Total energy + Delta-G solvation = -3532.113511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49167 -39.06043 -37.86755 -35.16701 -34.54857 -32.47332 -31.87293 -31.16837 -29.40811 -28.50284 -27.38176 -27.01061 -24.07163 -22.96585 -22.77254 -21.41790 -20.19906 -20.02267 -19.42050 -18.32668 -16.69666 -16.28742 -15.94245 -15.37946 -15.09971 -15.01615 -14.39498 -14.18967 -14.14939 -13.87003 -13.66808 -13.50356 -13.22525 -13.14820 -12.74728 -12.52302 -12.28039 -12.11326 -11.66552 -11.53337 -11.48602 -11.42015 -11.10765 -11.09016 -11.04848 -10.85040 -10.73453 -10.43195 -10.29171 -9.81103 -9.74586 -9.32591 -9.19748 -8.55831 -8.19635 -8.01612 -7.65334 -6.21629 -4.27901 0.86457 1.60689 2.32089 3.00579 3.20200 3.27316 3.28192 3.78393 3.88825 3.92475 4.30871 4.45468 4.59621 4.79870 4.96431 5.06063 5.11609 5.15523 5.23865 5.32910 5.36949 5.37198 5.45732 5.57890 5.67768 5.70311 5.80899 5.95446 5.99163 5.99248 6.07060 6.29126 6.33268 6.48786 6.51811 6.53344 6.65358 6.75104 6.92433 7.05288 7.11997 7.20808 7.28729 7.41747 7.53740 7.62905 7.74458 7.97941 8.49529 8.68302 8.92702 9.37835 10.86528 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002746 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.769621 B =10193.422972 C =11056.029790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.269 3.731 4 H 0.060 0.940 5 C -0.541 4.541 6 H 0.060 0.940 7 C 0.071 3.929 8 N -0.877 5.877 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.566 3.434 15 O -0.527 6.527 16 C 0.035 3.965 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.061 4.061 20 C -0.145 4.145 21 C -0.054 4.054 22 C -0.054 4.054 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.129 4.129 26 C 0.110 3.890 27 N -0.577 5.577 28 H 0.418 0.582 29 H 0.053 0.947 30 H 0.025 0.975 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.266 0.734 35 H 0.383 0.617 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 8.366 20.236 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.078 0.922 5 C -0.579 4.579 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.514 5.514 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.350 3.650 15 O -0.404 6.404 16 C -0.075 4.075 17 C -0.152 4.152 18 C -0.122 4.122 19 C -0.080 4.080 20 C -0.164 4.164 21 C -0.056 4.056 22 C -0.073 4.073 23 C -0.201 4.201 24 C -0.201 4.201 25 C -0.150 4.150 26 C -0.001 4.001 27 N -0.181 5.181 28 H 0.256 0.744 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.215 0.785 36 H 0.171 0.829 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.699 8.164 19.241 22.274 hybrid contribution 1.858 -0.416 0.279 1.924 sum -5.841 7.747 19.519 21.798 Atomic orbital electron populations 1.21860 0.97905 0.98409 1.01577 1.21862 0.93088 0.99649 1.01309 1.18882 0.94561 0.89004 0.80822 0.92230 1.21125 0.90363 1.44487 1.01935 0.92169 1.24875 0.98548 0.95017 0.94920 1.69973 1.35844 1.43410 1.02141 0.86519 0.84850 0.78717 0.77370 1.20379 1.21071 1.19931 1.46465 1.14068 1.55680 1.18711 1.17203 0.83227 0.79283 0.85317 1.90826 1.51625 1.59790 1.38149 1.20743 0.92977 1.05510 0.88239 1.20862 0.97263 1.01601 0.95484 1.18216 0.94584 1.04426 0.95004 1.20349 0.98098 0.96214 0.93327 1.20370 0.96734 1.03662 0.95644 1.19462 0.93661 0.97353 0.95127 1.20098 0.99912 0.96000 0.91271 1.21847 1.02315 0.94450 1.01481 1.21848 0.99109 1.00853 0.98270 1.19887 1.00333 1.03479 0.91300 1.18280 0.92578 0.98150 0.91060 1.42036 1.16106 1.49099 1.10874 0.74393 0.92795 0.95573 0.94060 0.90019 0.94693 0.92416 0.78532 0.82895 0.85940 0.86267 0.90645 0.92487 0.92340 0.92552 0.92504 0.92552 0.92339 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.12 -2.81 5.50 -26.73 -0.15 -2.96 16 3 C 0.27 6.57 2.11 -69.09 -0.15 6.43 16 4 H 0.06 1.71 7.52 -51.93 -0.39 1.32 16 5 C -0.54 -13.92 8.66 -34.44 -0.30 -14.22 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -24.37 12.16 55.43 0.67 -23.70 16 9 Si 0.90 20.23 29.55 -169.99 -5.02 15.21 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.70 -14.15 5.02 -56.13 -0.28 -14.44 16 14 C 0.57 11.29 6.36 -12.69 -0.08 11.21 16 15 O -0.53 -12.20 13.97 5.23 0.07 -12.12 16 16 C 0.04 0.59 6.97 -82.29 -0.57 0.01 16 17 C -0.13 -1.97 10.53 -39.15 -0.41 -2.38 16 18 C -0.12 -1.65 6.16 -106.93 -0.66 -2.31 16 19 C -0.06 -0.71 10.06 -39.54 -0.40 -1.11 16 20 C -0.14 -1.47 8.62 -39.97 -0.34 -1.81 16 21 C -0.05 -0.55 4.79 -104.57 -0.50 -1.05 16 22 C -0.05 -0.42 3.08 -91.77 -0.28 -0.70 16 23 C -0.14 -0.99 9.00 37.16 0.33 -0.65 16 24 C -0.14 -0.98 9.00 37.16 0.33 -0.64 16 25 C -0.13 -1.45 9.68 -39.42 -0.38 -1.83 16 26 C 0.11 1.47 7.25 -83.98 -0.61 0.86 16 27 N -0.58 -7.87 6.07 -7.36 -0.04 -7.91 16 28 H 0.42 4.70 8.12 -40.82 -0.33 4.37 16 29 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 32 H 0.08 2.10 6.80 -51.93 -0.35 1.75 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.38 6.59 7.58 -40.82 -0.31 6.28 16 36 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.12 0.95 7.05 -52.48 -0.37 0.58 16 39 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.38 7.36 -51.93 -0.38 0.00 16 46 H 0.12 1.11 7.92 -52.49 -0.42 0.69 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -29.93 371.59 -9.91 -39.83 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.97 Total: 9.64 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -3.94 Total: -12.11 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.35 Total: -46.05 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.93 -9.91 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762722270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.671 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds