Wall clock time and date at job start Tue Mar 31 2020 10:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47390 * 2 1 4 4 H 1.09003 * 109.46914 * 304.90169 * 3 2 1 5 5 C 1.50697 * 109.47192 * 184.90242 * 3 2 1 6 6 H 1.08006 * 119.99519 * 245.45260 * 5 3 2 7 7 C 1.37872 * 120.00064 * 65.45038 * 5 3 2 8 8 N 1.31513 * 120.00258 * 9.47556 * 7 5 3 9 9 Si 1.86800 * 119.99925 * 189.47059 * 7 5 3 10 10 H 1.48497 * 109.47329 * 84.99407 * 9 7 5 11 11 H 1.48505 * 109.47207 * 204.99716 * 9 7 5 12 12 H 1.48497 * 109.47095 * 324.99479 * 9 7 5 13 13 N 1.46497 * 109.46995 * 64.89779 * 3 2 1 14 14 C 1.34770 * 120.00485 * 275.00457 * 13 3 2 15 15 O 1.21649 * 119.99826 * 359.97438 * 14 13 3 16 16 C 1.47058 * 120.00185 * 180.02562 * 14 13 3 17 17 C 1.35879 * 125.42940 * 180.02562 * 16 14 13 18 18 C 1.41587 * 107.72178 * 179.97438 * 17 16 14 19 19 C 1.40098 * 133.37356 * 179.97438 * 18 17 16 20 20 C 1.36430 * 119.83337 * 180.02562 * 19 18 17 21 21 C 1.38939 * 120.61473 * 0.25331 * 20 19 18 22 22 C 1.50698 * 119.67972 * 179.74459 * 21 20 19 23 23 C 1.52998 * 109.47099 * 300.00233 * 22 21 20 24 24 C 1.53008 * 109.47177 * 60.00223 * 22 21 20 25 25 C 1.37679 * 120.64867 * 359.46677 * 21 20 19 26 26 C 1.39232 * 119.80417 * 0.54726 * 25 21 20 27 27 N 1.37473 * 133.18121 * 179.73098 * 26 25 21 28 28 H 0.97006 * 125.60196 * 359.96403 * 27 26 25 29 29 H 1.08999 * 109.46743 * 59.99842 * 1 2 3 30 30 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46797 * 300.00241 * 1 2 3 32 32 H 1.08998 * 109.46797 * 239.99759 * 2 1 3 33 33 H 1.08999 * 109.46743 * 120.00158 * 2 1 3 34 34 H 0.96998 * 120.00449 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99850 * 94.99716 * 13 3 2 36 36 H 1.07996 * 126.13678 * 359.97015 * 17 16 14 37 37 H 1.08005 * 120.08717 * 0.02562 * 19 18 17 38 38 H 1.08004 * 119.69720 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47362 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47002 * 299.99306 * 23 22 21 41 41 H 1.08992 * 109.47072 * 60.00060 * 23 22 21 42 42 H 1.09005 * 109.46727 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.46606 * 59.99676 * 24 22 21 44 44 H 1.09000 * 109.47103 * 180.02562 * 24 22 21 45 45 H 1.09001 * 109.46973 * 300.00236 * 24 22 21 46 46 H 1.07998 * 120.09458 * 180.26443 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6068 1.9810 -0.8429 5 6 3.5422 1.4441 -0.1214 6 1 4.1494 1.8090 0.6939 7 6 4.1412 0.9800 -1.2732 8 7 3.4097 0.7115 -2.3326 9 14 5.9919 0.7326 -1.3289 10 1 6.3290 -0.6068 -0.7835 11 1 6.4619 0.8273 -2.7345 12 1 6.6562 1.7807 -0.5132 13 7 1.6505 2.0982 1.2507 14 6 0.4330 2.6651 1.3636 15 8 -0.3422 2.6328 0.4267 16 6 0.0422 3.3238 2.6190 17 6 -1.1524 3.9277 2.8530 18 6 -1.1279 4.4336 4.1751 19 6 -2.0566 5.1367 4.9536 20 6 -1.7369 5.4984 6.2297 21 6 -0.4948 5.1808 6.7651 22 6 -0.1618 5.5958 8.1750 23 6 -0.2403 7.1194 8.2902 24 6 -1.1606 4.9589 9.1435 25 6 0.4327 4.4855 6.0222 26 6 0.1301 4.1057 4.7173 27 7 0.8304 3.4264 3.7488 28 1 1.7305 3.0771 3.8431 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8312 0.3853 -3.1431 35 1 2.2687 2.1242 1.9978 36 1 -1.9731 4.0074 2.1556 37 1 -3.0231 5.3917 4.5447 38 1 -2.4544 6.0408 6.8277 39 1 0.8467 5.2645 8.4227 40 1 0.4714 7.5730 7.6003 41 1 -1.2485 7.4510 8.0424 42 1 0.0002 7.4195 9.3102 43 1 -1.1047 3.8735 9.0614 44 1 -0.9200 5.2595 10.1633 45 1 -2.1689 5.2906 8.8957 46 1 1.3939 4.2396 6.4488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762722270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:31 Heat of formation + Delta-G solvation = -21.741019 kcal Electronic energy + Delta-G solvation = -25462.442801 eV Core-core repulsion = 21929.610460 eV Total energy + Delta-G solvation = -3532.832341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.58075 -40.56177 -38.82550 -37.00154 -35.35253 -34.34984 -32.98008 -32.86860 -30.42977 -29.69989 -28.75371 -27.88222 -25.56357 -24.47839 -23.71351 -22.63521 -21.66044 -21.22267 -20.77010 -19.72690 -18.17997 -17.58132 -17.19968 -16.78076 -16.50890 -16.35668 -15.91904 -15.41671 -15.11449 -14.96268 -14.70365 -14.52695 -14.47936 -14.17039 -14.13023 -13.87781 -13.49130 -13.33766 -13.09975 -13.01098 -12.95553 -12.65590 -12.35597 -12.24762 -12.24046 -12.13564 -11.82730 -11.71470 -11.67305 -11.42322 -11.15625 -11.02782 -10.79453 -10.57306 -9.82669 -9.13666 -8.70990 -8.22927 -6.36597 -0.19742 0.69230 1.13468 1.42859 1.43831 1.53152 1.91368 2.27721 2.38942 2.49399 2.92699 3.09027 3.66941 3.84263 3.87214 4.06263 4.23304 4.37379 4.41023 4.42163 4.42458 4.49374 4.52647 4.62040 4.67482 4.81265 4.91145 4.96650 5.01418 5.03164 5.09063 5.09733 5.18985 5.28428 5.35691 5.39010 5.41577 5.48646 5.49873 5.55825 5.62136 5.69668 5.69978 5.79143 5.85187 6.00532 6.14850 6.44656 6.69485 6.82522 7.24155 7.39319 8.85844 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002746 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.769621 B =10193.422972 C =11056.029790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C 0.277 3.723 4 H 0.008 0.992 5 C -0.552 4.552 6 H 0.072 0.928 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.698 5.698 14 C 0.568 3.432 15 O -0.567 6.567 16 C 0.009 3.991 17 C -0.123 4.123 18 C -0.144 4.144 19 C -0.067 4.067 20 C -0.141 4.141 21 C -0.044 4.044 22 C -0.054 4.054 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.141 4.141 26 C 0.107 3.893 27 N -0.569 5.569 28 H 0.427 0.573 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.266 0.734 35 H 0.399 0.601 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.812 9.213 23.837 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.026 0.974 5 C -0.590 4.590 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.346 5.346 14 C 0.355 3.645 15 O -0.447 6.447 16 C -0.101 4.101 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.085 4.085 20 C -0.160 4.160 21 C -0.045 4.045 22 C -0.072 4.072 23 C -0.200 4.200 24 C -0.200 4.200 25 C -0.162 4.162 26 C -0.004 4.004 27 N -0.174 5.174 28 H 0.267 0.733 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.233 0.767 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.170 9.017 22.893 25.628 hybrid contribution 1.592 -0.554 -0.686 1.820 sum -5.579 8.463 22.207 24.411 Atomic orbital electron populations 1.21703 0.96686 0.99569 1.00462 1.21715 0.94087 0.98788 1.00584 1.18476 0.94010 0.89166 0.80985 0.97418 1.21488 0.91063 1.44177 1.02311 0.90980 1.25756 1.03201 0.94677 0.94504 1.70122 1.37853 1.44443 1.02768 0.85429 0.79138 0.79035 0.77172 1.19506 1.21366 1.18864 1.46166 1.14775 1.55717 1.17919 1.17561 0.82404 0.78493 0.86069 1.90795 1.52650 1.61281 1.40006 1.20096 0.94200 1.07755 0.88008 1.21014 0.96762 1.00810 0.96414 1.18397 0.95888 1.05950 0.94551 1.20628 0.98457 0.95687 0.93753 1.20715 0.97239 1.02816 0.95186 1.19885 0.93146 0.95404 0.96113 1.20174 1.00632 0.96692 0.89731 1.21845 1.02374 0.93538 1.02249 1.21845 0.98996 1.00324 0.98808 1.20181 1.01672 1.03846 0.90475 1.18585 0.92324 0.97808 0.91667 1.41878 1.16310 1.49166 1.10057 0.73311 0.95196 0.93108 0.93866 0.92625 0.93249 0.92492 0.76690 0.83206 0.84245 0.83642 0.89979 0.93274 0.91960 0.91107 0.93198 0.91118 0.91962 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.51 71.98 0.61 -5.05 16 2 C -0.11 -5.43 5.50 30.60 0.17 -5.26 16 3 C 0.28 14.05 2.11 44.24 0.09 14.14 16 4 H 0.01 0.48 7.52 -2.39 -0.02 0.46 16 5 C -0.55 -28.80 8.66 25.60 0.22 -28.58 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.02 1.04 5.16 84.65 0.44 1.48 16 8 N -0.91 -52.47 12.16 21.45 0.26 -52.21 16 9 Si 0.97 41.55 29.55 68.60 2.03 43.58 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.70 -28.88 5.02 -449.73 -2.26 -31.14 16 14 C 0.57 23.56 6.36 86.56 0.55 24.11 16 15 O -0.57 -27.75 13.97 -4.19 -0.06 -27.81 16 16 C 0.01 0.32 6.97 39.92 0.28 0.60 16 17 C -0.12 -3.91 10.53 22.55 0.24 -3.67 16 18 C -0.14 -3.91 6.16 -21.36 -0.13 -4.04 16 19 C -0.07 -1.41 10.06 22.30 0.22 -1.19 16 20 C -0.14 -2.42 8.62 22.02 0.19 -2.23 16 21 C -0.04 -0.75 4.79 -19.83 -0.09 -0.84 16 22 C -0.05 -0.64 3.08 -11.54 -0.04 -0.67 16 23 C -0.14 -1.47 9.00 71.98 0.65 -0.82 16 24 C -0.14 -1.44 9.00 71.98 0.65 -0.79 16 25 C -0.14 -2.83 9.68 22.38 0.22 -2.62 16 26 C 0.11 2.72 7.25 39.14 0.28 3.01 16 27 N -0.57 -15.24 6.07 -177.18 -1.08 -16.31 16 28 H 0.43 9.27 8.12 -92.70 -0.75 8.52 16 29 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.89 5.65 -2.39 -0.01 1.87 16 32 H 0.06 2.96 6.80 -2.39 -0.02 2.95 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.40 13.76 7.58 -92.71 -0.70 13.06 16 36 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.15 1.74 7.05 -2.91 -0.02 1.72 16 39 H 0.08 0.90 7.85 -2.39 -0.02 0.88 16 40 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.60 7.36 -2.39 -0.02 0.58 16 42 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 0.59 7.36 -2.39 -0.02 0.57 16 46 H 0.14 2.18 7.92 -2.91 -0.02 2.16 16 Total: -1.00 -66.91 371.59 2.99 -63.92 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.45 Total: 32.39 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.55 Total: -12.42 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.07 Total: -99.66 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.06 Total: -27.81 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -66.91 2.99 -63.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762722270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.175 kcal (2) G-P(sol) polarization free energy of solvation -66.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds