Wall clock time and date at job start Tue Mar 31 2020 10:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47075 * 2 1 4 4 C 1.52998 * 109.46997 * 119.99448 * 2 1 3 5 5 C 1.52996 * 109.47488 * 239.99597 * 2 1 3 6 6 C 1.52999 * 109.46919 * 300.00364 * 5 2 1 7 7 C 1.47210 * 109.46706 * 59.99800 * 5 2 1 8 8 N 3.43550 * 83.99739 * 278.55092 * 2 1 3 9 9 N 1.46498 * 109.47344 * 180.02562 * 5 2 1 10 10 C 1.34779 * 119.99666 * 180.02562 * 9 5 2 11 11 O 1.21281 * 120.00217 * 0.02562 * 10 9 5 12 12 C 1.50706 * 119.99755 * 179.97438 * 10 9 5 13 13 C 1.50694 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.37641 * 120.12608 * 264.99768 * 13 12 10 15 15 C 1.38612 * 120.24595 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.50677 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24384 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12914 * 84.72581 * 13 12 10 19 19 C 1.41394 * 120.24393 * 359.97438 * 18 13 12 20 20 H 1.08003 * 120.00065 * 333.89456 * 19 18 13 21 21 C 1.39953 * 120.00059 * 153.89359 * 19 18 13 22 22 N 1.30820 * 119.99761 * 343.71922 * 21 19 18 23 23 Si 1.86796 * 120.00012 * 163.71679 * 21 19 18 24 24 H 1.48508 * 109.47239 * 59.99866 * 23 21 19 25 25 H 1.48496 * 109.47365 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47330 * 300.00293 * 23 21 19 27 27 H 1.09004 * 109.46991 * 59.99994 * 1 2 3 28 28 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46873 * 300.00370 * 1 2 3 30 30 H 1.08993 * 109.46921 * 59.99775 * 3 2 1 31 31 H 1.08999 * 109.46906 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46894 * 299.99675 * 3 2 1 33 33 H 1.09003 * 109.47330 * 60.00456 * 4 2 1 34 34 H 1.09008 * 109.47198 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47458 * 299.99824 * 4 2 1 36 36 H 1.08998 * 109.47278 * 59.99807 * 6 5 2 37 37 H 1.09006 * 109.46859 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47004 * 299.99641 * 6 5 2 39 39 H 0.97001 * 120.00195 * 359.97438 * 9 5 2 40 40 H 1.09003 * 109.46740 * 299.99802 * 12 10 9 41 41 H 1.08997 * 109.47018 * 59.99925 * 12 10 9 42 42 H 1.07993 * 119.87515 * 0.02562 * 14 13 12 43 43 H 1.08004 * 119.75041 * 180.02562 * 15 14 13 44 44 H 1.07998 * 119.87934 * 179.97438 * 16 15 14 45 45 H 1.07999 * 120.12872 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99848 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0401 -0.7213 -1.2491 6 6 1.5300 -2.1638 -1.2491 7 6 1.5493 -0.0274 -2.4511 8 7 1.1707 0.5080 -3.3787 9 7 3.5051 -0.7218 -1.2488 10 6 4.1789 -1.3052 -2.2598 11 8 3.5725 -1.8292 -3.1701 12 6 5.6860 -1.3052 -2.2598 13 6 6.1883 -2.0147 -3.4907 14 6 6.5164 -3.3501 -3.4328 15 6 6.9781 -4.0053 -4.5637 16 6 7.1155 -3.3254 -5.7643 17 6 6.7945 -1.9898 -5.8451 18 6 6.3182 -1.3159 -4.7050 19 6 5.9783 0.0546 -4.7779 20 1 5.2545 0.4687 -4.0915 21 6 6.5796 0.8745 -5.7396 22 7 7.6656 0.4771 -6.3512 23 14 5.8316 2.5363 -6.1497 24 1 5.7999 3.3800 -4.9280 25 1 6.6513 3.2045 -7.1922 26 1 4.4484 2.3454 -6.6553 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7488 1.2494 34 1 3.1300 -0.7207 1.2496 35 1 1.6767 -0.2072 2.1393 36 1 0.4401 -2.1638 -1.2491 37 1 1.8931 -2.6775 -2.1393 38 1 1.8933 -2.6775 -0.3590 39 1 3.9901 -0.3017 -0.5213 40 1 6.0493 -0.2775 -2.2595 41 1 6.0492 -1.8193 -1.3699 42 1 6.4129 -3.8897 -2.5031 43 1 7.2329 -5.0535 -4.5093 44 1 7.4766 -3.8458 -6.6390 45 1 6.9026 -1.4619 -6.7811 46 1 8.0821 1.0452 -7.0180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766587713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:31 Heat of formation + Delta-G solvation = -0.681956 kcal Electronic energy + Delta-G solvation = -26929.688975 eV Core-core repulsion = 23397.769824 eV Total energy + Delta-G solvation = -3531.919151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53451 -38.35650 -37.08394 -35.60382 -33.59658 -33.44903 -31.84084 -30.30282 -29.42064 -27.74868 -27.60039 -26.51017 -25.02676 -24.25219 -20.96665 -20.86156 -20.11727 -19.18499 -17.59223 -17.12122 -16.78150 -15.50469 -15.38643 -14.86384 -14.58759 -14.48149 -14.16154 -14.06944 -13.68281 -13.47932 -13.23244 -13.02607 -12.63869 -12.54932 -12.54083 -12.33509 -12.15891 -12.07930 -12.01047 -11.71790 -11.54760 -11.53505 -11.16758 -11.07848 -11.06656 -10.96317 -10.89117 -10.79302 -10.66319 -10.37734 -9.46484 -9.36192 -9.15510 -9.11618 -9.03933 -7.28998 -7.27043 -6.71151 -4.31726 2.65975 2.86208 3.00820 3.05612 3.08484 3.14206 3.20984 3.31556 3.70193 3.96840 3.97323 4.31842 4.50944 4.68519 4.70487 5.01453 5.09628 5.33962 5.38201 5.44033 5.50646 5.59245 5.62576 5.65095 5.67624 5.78308 5.79234 5.85020 6.00018 6.03770 6.04258 6.13553 6.29654 6.32677 6.43207 6.53019 6.59504 6.81659 7.11284 7.31901 7.44733 7.64973 7.76010 7.83366 7.95080 8.09520 8.15586 8.33919 8.67043 8.75623 8.94368 9.04106 10.22764 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004958 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.967565 B = 5645.845902 C = 6984.135374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.150 4.150 4 C -0.143 4.143 5 C 0.288 3.712 6 C -0.167 4.167 7 C 0.208 3.792 8 N -0.418 5.418 9 N -0.734 5.734 10 C 0.515 3.485 11 O -0.506 6.506 12 C -0.069 4.069 13 C -0.183 4.183 14 C -0.079 4.079 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.130 3.870 19 C -0.455 4.455 20 H 0.071 0.929 21 C 0.079 3.921 22 N -0.794 5.794 23 Si 0.899 3.101 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.264 1.264 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.403 0.597 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 0.043 16.521 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.207 4.207 4 C -0.200 4.200 5 C 0.198 3.802 6 C -0.225 4.225 7 C -0.112 4.112 8 N -0.093 5.093 9 N -0.392 5.392 10 C 0.303 3.697 11 O -0.378 6.378 12 C -0.108 4.108 13 C -0.185 4.185 14 C -0.098 4.098 15 C -0.259 4.259 16 C -0.125 4.125 17 C -0.178 4.178 18 C 0.128 3.872 19 C -0.484 4.484 20 H 0.090 0.910 21 C -0.139 4.139 22 N -0.420 5.420 23 Si 0.723 3.277 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.189 1.189 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.240 0.760 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.322 0.541 14.240 17.028 hybrid contribution 0.153 0.864 0.257 0.914 sum -9.169 1.405 14.497 17.210 Atomic orbital electron populations 1.21981 0.93115 1.02842 1.02490 1.20772 0.96874 0.95867 0.93136 1.21982 1.01702 0.94529 1.02517 1.21950 1.01550 1.00764 0.95733 1.17525 0.81833 0.94571 0.86300 1.22360 1.01529 0.93462 1.05183 1.29188 0.94075 0.93458 0.94466 1.81133 1.08455 1.09815 1.09910 1.46401 1.04047 1.61500 1.27258 1.21433 0.91202 0.76625 0.80483 1.90687 1.69903 1.42792 1.34394 1.20261 0.89181 1.03035 0.98345 1.19017 1.11915 0.94233 0.93375 1.20280 0.99400 0.93690 0.96393 1.20297 1.13274 0.97959 0.94415 1.20677 1.00664 0.95139 0.96046 1.21297 1.04767 0.92742 0.99003 1.17318 0.87825 0.92470 0.89591 1.19413 1.21081 0.93565 1.14377 0.91045 1.25839 0.93447 1.00117 0.94450 1.69806 1.14159 1.37592 1.20421 0.86516 0.80458 0.81634 0.79071 1.19086 1.20222 1.18852 0.92475 0.91428 0.91523 0.91563 0.91813 0.92422 0.91442 0.91904 0.91719 0.91156 0.89246 0.90323 0.76044 0.88529 0.90298 0.89717 0.89700 0.89635 0.86596 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.87 37.16 0.29 -0.87 16 2 C -0.06 -0.56 0.33 -154.51 -0.05 -0.61 16 3 C -0.15 -1.32 8.05 37.16 0.30 -1.03 16 4 C -0.14 -0.88 7.95 37.16 0.30 -0.58 16 5 C 0.29 3.59 0.19 -134.60 -0.03 3.56 16 6 C -0.17 -1.95 7.65 37.16 0.28 -1.67 16 7 C 0.21 3.52 10.21 -20.76 -0.21 3.30 16 8 N -0.42 -8.34 18.54 42.15 0.78 -7.56 16 9 N -0.73 -9.68 4.49 -50.22 -0.23 -9.90 16 10 C 0.51 9.40 6.85 -10.98 -0.08 9.32 16 11 O -0.51 -11.50 13.24 5.56 0.07 -11.43 16 12 C -0.07 -1.28 5.18 -29.04 -0.15 -1.43 16 13 C -0.18 -4.34 4.43 -103.92 -0.46 -4.80 16 14 C -0.08 -1.79 9.66 -39.66 -0.38 -2.18 16 15 C -0.24 -5.57 10.05 -39.29 -0.39 -5.96 16 16 C -0.11 -2.63 10.02 -39.66 -0.40 -3.02 16 17 C -0.16 -4.30 8.69 -38.87 -0.34 -4.64 16 18 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16 19 C -0.45 -12.23 8.14 -37.74 -0.31 -12.54 16 20 H 0.07 1.90 6.67 -52.48 -0.35 1.55 16 21 C 0.08 2.05 5.16 -17.34 -0.09 1.96 16 22 N -0.79 -20.91 10.96 55.55 0.61 -20.30 16 23 Si 0.90 19.94 29.59 -169.99 -5.03 14.91 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 27 H 0.06 0.56 7.23 -51.93 -0.38 0.18 16 28 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.53 6.86 -51.93 -0.36 0.18 16 32 H 0.06 0.64 7.23 -51.93 -0.38 0.27 16 33 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 34 H 0.06 0.36 6.86 -51.92 -0.36 0.00 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.09 1.39 6.17 -51.93 -0.32 1.07 16 38 H 0.08 0.72 6.43 -51.93 -0.33 0.39 16 39 H 0.40 3.95 6.16 -40.82 -0.25 3.69 16 40 H 0.10 1.80 7.08 -51.93 -0.37 1.43 16 41 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 42 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 44 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 45 H 0.12 3.25 6.20 -52.49 -0.33 2.92 16 46 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -33.12 365.25 -7.10 -40.22 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.50 Total: 6.83 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.31 Total: -18.27 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 1.16 Total: -37.76 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.07 Total: -11.43 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.12 -7.10 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766587713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.534 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds