Wall clock time and date at job start Tue Mar 31 2020 10:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47075 * 2 1 4 4 C 1.52998 * 109.46997 * 119.99448 * 2 1 3 5 5 C 1.52996 * 109.47488 * 239.99597 * 2 1 3 6 6 C 1.52999 * 109.46919 * 300.00364 * 5 2 1 7 7 C 1.47210 * 109.46706 * 59.99800 * 5 2 1 8 8 N 3.43550 * 83.99739 * 278.55092 * 2 1 3 9 9 N 1.46498 * 109.47344 * 180.02562 * 5 2 1 10 10 C 1.34779 * 119.99666 * 180.02562 * 9 5 2 11 11 O 1.21281 * 120.00217 * 0.02562 * 10 9 5 12 12 C 1.50706 * 119.99755 * 179.97438 * 10 9 5 13 13 C 1.50694 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.37641 * 120.12608 * 264.99768 * 13 12 10 15 15 C 1.38612 * 120.24595 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.50677 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24384 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12914 * 84.72581 * 13 12 10 19 19 C 1.41394 * 120.24393 * 359.97438 * 18 13 12 20 20 H 1.08003 * 120.00065 * 333.89456 * 19 18 13 21 21 C 1.39953 * 120.00059 * 153.89359 * 19 18 13 22 22 N 1.30820 * 119.99761 * 343.71922 * 21 19 18 23 23 Si 1.86796 * 120.00012 * 163.71679 * 21 19 18 24 24 H 1.48508 * 109.47239 * 59.99866 * 23 21 19 25 25 H 1.48496 * 109.47365 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47330 * 300.00293 * 23 21 19 27 27 H 1.09004 * 109.46991 * 59.99994 * 1 2 3 28 28 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46873 * 300.00370 * 1 2 3 30 30 H 1.08993 * 109.46921 * 59.99775 * 3 2 1 31 31 H 1.08999 * 109.46906 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46894 * 299.99675 * 3 2 1 33 33 H 1.09003 * 109.47330 * 60.00456 * 4 2 1 34 34 H 1.09008 * 109.47198 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47458 * 299.99824 * 4 2 1 36 36 H 1.08998 * 109.47278 * 59.99807 * 6 5 2 37 37 H 1.09006 * 109.46859 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47004 * 299.99641 * 6 5 2 39 39 H 0.97001 * 120.00195 * 359.97438 * 9 5 2 40 40 H 1.09003 * 109.46740 * 299.99802 * 12 10 9 41 41 H 1.08997 * 109.47018 * 59.99925 * 12 10 9 42 42 H 1.07993 * 119.87515 * 0.02562 * 14 13 12 43 43 H 1.08004 * 119.75041 * 180.02562 * 15 14 13 44 44 H 1.07998 * 119.87934 * 179.97438 * 16 15 14 45 45 H 1.07999 * 120.12872 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99848 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0401 -0.7213 -1.2491 6 6 1.5300 -2.1638 -1.2491 7 6 1.5493 -0.0274 -2.4511 8 7 1.1707 0.5080 -3.3787 9 7 3.5051 -0.7218 -1.2488 10 6 4.1789 -1.3052 -2.2598 11 8 3.5725 -1.8292 -3.1701 12 6 5.6860 -1.3052 -2.2598 13 6 6.1883 -2.0147 -3.4907 14 6 6.5164 -3.3501 -3.4328 15 6 6.9781 -4.0053 -4.5637 16 6 7.1155 -3.3254 -5.7643 17 6 6.7945 -1.9898 -5.8451 18 6 6.3182 -1.3159 -4.7050 19 6 5.9783 0.0546 -4.7779 20 1 5.2545 0.4687 -4.0915 21 6 6.5796 0.8745 -5.7396 22 7 7.6656 0.4771 -6.3512 23 14 5.8316 2.5363 -6.1497 24 1 5.7999 3.3800 -4.9280 25 1 6.6513 3.2045 -7.1922 26 1 4.4484 2.3454 -6.6553 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7488 1.2494 34 1 3.1300 -0.7207 1.2496 35 1 1.6767 -0.2072 2.1393 36 1 0.4401 -2.1638 -1.2491 37 1 1.8931 -2.6775 -2.1393 38 1 1.8933 -2.6775 -0.3590 39 1 3.9901 -0.3017 -0.5213 40 1 6.0493 -0.2775 -2.2595 41 1 6.0492 -1.8193 -1.3699 42 1 6.4129 -3.8897 -2.5031 43 1 7.2329 -5.0535 -4.5093 44 1 7.4766 -3.8458 -6.6390 45 1 6.9026 -1.4619 -6.7811 46 1 8.0821 1.0452 -7.0180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766587713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:30 Heat of formation + Delta-G solvation = -20.805298 kcal Electronic energy + Delta-G solvation = -26930.561589 eV Core-core repulsion = 23397.769824 eV Total energy + Delta-G solvation = -3532.791765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68152 -39.82762 -38.69620 -36.93501 -35.52650 -34.62176 -33.46359 -31.47334 -31.26846 -28.77669 -28.25059 -27.78255 -26.82563 -25.34144 -22.82720 -22.38345 -21.37002 -20.46321 -19.12824 -18.73711 -17.99375 -17.26371 -16.61365 -16.23624 -16.20397 -15.68303 -15.44190 -15.13945 -14.97267 -14.93115 -14.63036 -14.40872 -14.23406 -13.82061 -13.64314 -13.43549 -13.37412 -13.33031 -13.07968 -12.97894 -12.86701 -12.80764 -12.71211 -12.59595 -12.48435 -12.22194 -12.17096 -11.79630 -11.72216 -11.55349 -11.31759 -11.22073 -11.07946 -10.62049 -10.29704 -9.22106 -9.15322 -8.63851 -6.31858 0.96289 1.11793 1.26093 1.34651 1.46336 1.48045 1.72510 1.81273 2.11899 2.45816 2.75767 2.86093 3.47412 3.73518 3.76825 4.01335 4.13554 4.26265 4.35277 4.44023 4.50740 4.64477 4.67796 4.73573 4.75485 4.79490 4.84213 4.86377 4.94948 5.03791 5.07927 5.11910 5.14564 5.17797 5.21439 5.33983 5.36828 5.45161 5.47427 5.55174 5.59903 5.77063 6.03550 6.16153 6.22459 6.41188 6.48804 6.62929 6.74326 6.97054 7.11071 7.40862 8.32059 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004958 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.967565 B = 5645.845902 C = 6984.135374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.153 4.153 4 C -0.141 4.141 5 C 0.281 3.719 6 C -0.163 4.163 7 C 0.226 3.774 8 N -0.485 5.485 9 N -0.711 5.711 10 C 0.518 3.482 11 O -0.557 6.557 12 C -0.070 4.070 13 C -0.184 4.184 14 C -0.086 4.086 15 C -0.239 4.239 16 C -0.119 4.119 17 C -0.196 4.196 18 C 0.096 3.904 19 C -0.481 4.481 20 H 0.064 0.936 21 C 0.042 3.958 22 N -0.822 5.822 23 Si 0.956 3.044 24 H -0.253 1.253 25 H -0.259 1.259 26 H -0.285 1.285 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.112 0.888 39 H 0.423 0.577 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -0.631 20.610 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.211 4.211 4 C -0.198 4.198 5 C 0.191 3.809 6 C -0.222 4.222 7 C -0.093 4.093 8 N -0.162 5.162 9 N -0.369 5.369 10 C 0.306 3.694 11 O -0.433 6.433 12 C -0.109 4.109 13 C -0.186 4.186 14 C -0.104 4.104 15 C -0.258 4.258 16 C -0.137 4.137 17 C -0.215 4.215 18 C 0.094 3.906 19 C -0.511 4.511 20 H 0.082 0.918 21 C -0.173 4.173 22 N -0.449 5.449 23 Si 0.778 3.222 24 H -0.177 1.177 25 H -0.183 1.183 26 H -0.211 1.211 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.263 0.737 40 H 0.112 0.888 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.121 0.879 45 H 0.110 0.890 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.523 -0.110 18.386 20.706 hybrid contribution 0.202 0.941 -0.939 1.345 sum -9.321 0.831 17.447 19.798 Atomic orbital electron populations 1.22031 0.92500 1.03639 1.02389 1.20829 0.97289 0.95445 0.92102 1.22045 1.02024 0.94706 1.02277 1.21993 1.02104 1.01126 0.94585 1.18135 0.81006 0.95425 0.86303 1.22367 1.02681 0.92325 1.04821 1.30217 0.92527 0.92050 0.94483 1.81121 1.10641 1.12272 1.12169 1.46093 1.04598 1.59864 1.26372 1.21274 0.91068 0.76382 0.80667 1.90691 1.70722 1.45391 1.36535 1.20311 0.89641 1.02946 0.97996 1.19545 1.09991 0.95009 0.94046 1.20763 0.98239 0.93501 0.97926 1.20751 1.11740 0.99468 0.93860 1.20945 1.00595 0.94466 0.97721 1.21286 1.07538 0.94085 0.98603 1.17698 0.88915 0.93049 0.90973 1.19501 1.21797 0.94229 1.15589 0.91830 1.26470 0.93589 1.03024 0.94196 1.69854 1.15059 1.38878 1.21106 0.85659 0.78502 0.78416 0.79620 1.17703 1.18312 1.21052 0.95152 0.90231 0.89059 0.88928 0.91355 0.95560 0.90479 0.91112 0.89544 0.89491 0.93173 0.86948 0.73696 0.88778 0.85635 0.85705 0.86526 0.87950 0.89017 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.87 71.98 0.57 -1.38 16 2 C -0.06 -0.78 0.33 -52.18 -0.02 -0.80 16 3 C -0.15 -2.34 8.05 71.99 0.58 -1.76 16 4 C -0.14 -1.02 7.95 71.98 0.57 -0.44 16 5 C 0.28 6.56 0.19 1.80 0.00 6.56 16 6 C -0.16 -3.49 7.65 71.98 0.55 -2.94 16 7 C 0.23 7.79 10.21 89.45 0.91 8.71 16 8 N -0.49 -20.38 18.54 20.01 0.37 -20.01 16 9 N -0.71 -17.24 4.49 -431.19 -1.94 -19.17 16 10 C 0.52 18.36 6.85 87.66 0.60 18.96 16 11 O -0.56 -25.68 13.24 -3.03 -0.04 -25.72 16 12 C -0.07 -2.47 5.18 29.10 0.15 -2.32 16 13 C -0.18 -8.61 4.43 -19.41 -0.09 -8.70 16 14 C -0.09 -3.71 9.66 22.22 0.21 -3.50 16 15 C -0.24 -10.68 10.05 22.46 0.23 -10.46 16 16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 17 C -0.20 -11.04 8.69 22.73 0.20 -10.84 16 18 C 0.10 5.31 5.56 -21.29 -0.12 5.19 16 19 C -0.48 -26.93 8.14 23.46 0.19 -26.73 16 20 H 0.06 3.52 6.67 -2.91 -0.02 3.50 16 21 C 0.04 2.25 5.16 85.26 0.44 2.69 16 22 N -0.82 -45.06 10.96 21.83 0.24 -44.82 16 23 Si 0.96 42.32 29.59 68.60 2.03 44.35 16 24 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 26 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 27 H 0.03 0.56 7.23 -2.38 -0.02 0.55 16 28 H 0.08 0.85 6.43 -2.39 -0.02 0.84 16 29 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.95 6.86 -2.39 -0.02 0.94 16 32 H 0.03 0.56 7.23 -2.39 -0.02 0.55 16 33 H 0.08 0.46 6.43 -2.39 -0.02 0.44 16 34 H 0.07 0.43 6.86 -2.38 -0.02 0.41 16 35 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.09 1.54 6.43 -2.39 -0.02 1.53 16 37 H 0.05 1.53 6.17 -2.38 -0.01 1.51 16 38 H 0.11 1.62 6.43 -2.39 -0.02 1.60 16 39 H 0.42 6.84 6.16 -92.71 -0.57 6.27 16 40 H 0.09 3.42 7.08 -2.39 -0.02 3.40 16 41 H 0.13 3.22 8.05 -2.39 -0.02 3.20 16 42 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 43 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 44 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.09 5.49 6.20 -2.91 -0.02 5.47 16 46 H 0.29 14.29 8.30 -92.71 -0.77 13.53 16 Total: -1.00 -78.66 365.25 6.30 -72.36 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.43 Total: 26.46 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 5.20 Total: -33.45 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -1.33 Total: -84.00 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.04 Total: -25.72 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -78.66 6.30 -72.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766587713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.553 kcal (2) G-P(sol) polarization free energy of solvation -78.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds