Wall clock time and date at job start Tue Mar 31 2020 10:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47517 * 2 1 4 4 H 1.09005 * 109.46348 * 54.99929 * 3 2 1 5 5 C 1.52997 * 109.47128 * 295.00600 * 3 2 1 6 6 C 1.52992 * 109.47449 * 174.99999 * 3 2 1 7 7 O 1.42901 * 109.47471 * 185.00081 * 6 3 2 8 8 N 1.41595 * 114.00326 * 180.02562 * 7 6 3 9 9 C 1.29584 * 120.00016 * 180.02562 * 8 7 6 10 10 C 1.47148 * 119.99910 * 180.02562 * 9 8 7 11 11 C 1.36098 * 126.72408 * 180.02562 * 10 9 8 12 12 N 1.36037 * 109.72845 * 179.97438 * 11 10 9 13 13 C 1.46498 * 124.84634 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47083 * 264.97318 * 13 12 11 15 15 H 1.08000 * 119.99919 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00202 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00220 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99852 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46945 * 90.00257 * 18 16 14 20 20 H 1.48504 * 109.47021 * 209.99946 * 18 16 14 21 21 H 1.48495 * 109.46978 * 329.99788 * 18 16 14 22 22 C 1.37893 * 110.31092 * 359.97438 * 12 11 10 23 23 C 1.39142 * 133.18882 * 180.02562 * 22 12 11 24 24 C 1.37743 * 119.92639 * 179.97438 * 23 22 12 25 25 C 1.38782 * 120.64381 * 359.97438 * 24 23 22 26 26 C 1.37725 * 120.31491 * 0.02562 * 25 24 23 27 27 C 1.39335 * 119.67288 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46273 * 299.99468 * 1 2 3 29 29 H 1.08997 * 109.47011 * 59.99623 * 1 2 3 30 30 H 1.08994 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47003 * 240.00608 * 2 1 3 32 32 H 1.09003 * 109.47359 * 120.00644 * 2 1 3 33 33 H 1.09003 * 109.47266 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47231 * 299.99666 * 5 3 2 35 35 H 1.09008 * 109.47463 * 59.99619 * 5 3 2 36 36 H 1.09000 * 109.46777 * 65.00445 * 6 3 2 37 37 H 1.08999 * 109.47523 * 305.00886 * 6 3 2 38 38 H 1.08004 * 120.00009 * 359.97438 * 9 8 7 39 39 H 1.08003 * 125.13611 * 359.93613 * 11 10 9 40 40 H 1.08996 * 109.47391 * 24.96909 * 13 12 11 41 41 H 1.08995 * 109.47444 * 144.97163 * 13 12 11 42 42 H 0.97001 * 120.00050 * 180.02562 * 17 16 14 43 43 H 1.08000 * 120.03735 * 359.97438 * 23 22 12 44 44 H 1.08002 * 119.68117 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.84516 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.16411 * 179.72212 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 8 4.0316 2.7898 0.2429 8 7 5.4378 2.9032 0.3647 9 6 5.9862 4.0717 0.4787 10 6 7.4475 4.1895 0.6048 11 6 8.1633 5.3400 0.7318 12 7 9.4889 5.0484 0.8230 13 6 10.5562 6.0412 0.9699 14 6 11.1222 6.3747 -0.3863 15 1 10.7268 5.8948 -1.2694 16 6 12.1448 7.2925 -0.4999 17 7 12.6391 7.5832 -1.6834 18 14 12.8293 8.1220 1.0276 19 1 13.9497 7.3125 1.5704 20 1 13.3231 9.4775 0.6755 21 1 11.7591 8.2353 2.0508 22 6 9.6847 3.6850 0.7585 23 6 10.8206 2.8828 0.8045 24 6 10.6992 1.5137 0.7141 25 6 9.4514 0.9217 0.5776 26 6 8.3150 1.6983 0.5301 27 6 8.4227 3.0846 0.6193 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.9983 3.1544 -1.3071 34 1 2.0698 1.5876 -2.1492 35 1 0.5489 2.1253 -1.3968 36 1 4.0029 0.9836 -0.7597 37 1 3.8572 0.8799 1.0112 38 1 5.3707 4.9592 0.4803 39 1 7.7425 6.3344 0.7559 40 1 10.1519 6.9444 1.4269 41 1 11.3452 5.6355 1.6031 42 1 13.3589 8.2286 -1.7633 43 1 11.7965 3.3331 0.9109 44 1 11.5836 0.8948 0.7498 45 1 9.3711 -0.1530 0.5075 46 1 7.3456 1.2354 0.4193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793144708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:15 Heat of formation + Delta-G solvation = 51.383894 kcal Electronic energy + Delta-G solvation = -24775.263747 eV Core-core repulsion = 21245.602340 eV Total energy + Delta-G solvation = -3529.661407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.79299 -37.98889 -36.57945 -36.14707 -34.15949 -33.00911 -31.39020 -29.95663 -29.83713 -28.57219 -27.35253 -26.53639 -23.65088 -23.00847 -22.35091 -21.83197 -20.32902 -20.14980 -18.86252 -17.23385 -17.14277 -16.24866 -15.91071 -15.74436 -15.18711 -14.93200 -14.73515 -14.59411 -14.13182 -13.92101 -13.58180 -13.36686 -13.26119 -12.92089 -12.64573 -12.53050 -12.28869 -12.14536 -12.06727 -11.99880 -11.56875 -11.51256 -11.22781 -11.02990 -10.95344 -10.88459 -10.86242 -10.76614 -10.40958 -10.25544 -9.86256 -9.53563 -9.47634 -8.89019 -8.73381 -7.68435 -6.94260 -6.36110 -4.41310 1.42237 1.98384 2.33343 2.87820 3.07171 3.13123 3.16259 3.53975 3.65427 4.12006 4.45920 4.59897 4.66548 4.67694 4.92043 4.96560 5.04181 5.23704 5.25076 5.27254 5.31245 5.40294 5.50433 5.54171 5.59493 5.62523 5.71222 5.74017 5.77147 5.79347 5.86262 5.95800 6.05648 6.11154 6.17223 6.19035 6.25471 6.34223 6.36268 6.55788 6.66569 6.95758 7.08656 7.16871 7.20768 7.34680 7.77179 7.79379 7.94093 8.19767 8.69021 9.18663 10.75966 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.002533 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.716709 B =11049.362635 C =11940.956524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.090 4.090 4 H 0.076 0.924 5 C -0.146 4.146 6 C 0.085 3.915 7 O -0.255 6.255 8 N -0.360 5.360 9 C 0.204 3.796 10 C -0.195 4.195 11 C 0.131 3.869 12 N -0.436 5.436 13 C 0.205 3.795 14 C -0.549 4.549 15 H 0.083 0.917 16 C 0.080 3.920 17 N -0.882 5.882 18 Si 0.873 3.127 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.264 1.264 22 C 0.098 3.902 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.152 4.152 26 C -0.074 4.074 27 C -0.077 4.077 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.115 0.885 39 H 0.173 0.827 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.270 0.730 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.422 -11.146 5.659 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.095 0.905 5 C -0.203 4.203 6 C 0.008 3.992 7 O -0.267 6.267 8 N -0.109 5.109 9 C -0.004 4.004 10 C -0.204 4.204 11 C -0.008 4.008 12 N -0.111 5.111 13 C 0.085 3.915 14 C -0.587 4.587 15 H 0.101 0.899 16 C -0.125 4.125 17 N -0.519 5.519 18 Si 0.699 3.301 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.008 4.008 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.171 4.171 26 C -0.093 4.093 27 C -0.082 4.082 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.190 0.810 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.068 -11.589 5.533 20.569 hybrid contribution 0.302 1.300 0.553 1.445 sum -15.766 -10.289 6.086 19.785 Atomic orbital electron populations 1.21797 0.95459 1.01610 1.02064 1.21493 0.96164 0.95441 1.02371 1.21189 0.93460 0.96767 0.99532 0.90512 1.21841 1.00890 1.01156 0.96447 1.22331 0.92926 0.83344 1.00599 1.89716 1.15830 1.27877 1.93316 1.76888 0.91529 1.24050 1.18388 1.23319 0.92427 0.94029 0.90597 1.18078 0.88869 0.92092 1.21391 1.21922 0.82819 0.98432 0.97595 1.44300 1.06348 1.05243 1.55256 1.20165 0.85256 0.86598 0.99454 1.21188 1.19727 1.25931 0.91832 0.89921 1.24839 0.95693 0.95815 0.96137 1.69872 1.26055 1.33184 1.22768 0.86899 0.80162 0.79753 0.83253 1.19647 1.20497 1.18892 1.18260 0.95149 0.83227 1.04159 1.20138 0.96429 0.92769 1.03484 1.20689 0.97287 0.93553 1.02016 1.20801 0.92445 0.98989 1.04912 1.20470 0.98364 0.91392 0.99047 1.18891 0.91299 0.92951 1.05036 0.92707 0.92346 0.92700 0.91652 0.91736 0.92084 0.92749 0.92569 0.92945 0.93067 0.86774 0.80993 0.93371 0.94148 0.92014 0.85997 0.86388 0.86778 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.84 2.63 -90.62 -0.24 -1.08 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 6 C 0.09 1.03 5.78 37.15 0.21 1.24 16 7 O -0.26 -3.87 10.90 -11.47 -0.12 -3.99 16 8 N -0.36 -5.94 10.14 32.05 0.33 -5.61 16 9 C 0.20 3.20 11.14 -14.88 -0.17 3.03 16 10 C -0.19 -3.39 6.27 -103.34 -0.65 -4.04 16 11 C 0.13 2.26 11.23 -16.46 -0.18 2.07 16 12 N -0.44 -8.77 2.74 -115.42 -0.32 -9.08 16 13 C 0.20 4.42 4.79 -5.19 -0.02 4.39 16 14 C -0.55 -14.35 9.94 -34.44 -0.34 -14.69 16 15 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.88 -25.29 13.96 55.43 0.77 -24.52 16 18 Si 0.87 19.21 27.47 -169.99 -4.67 14.54 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 22 C 0.10 1.97 6.79 -83.97 -0.57 1.40 16 23 C -0.11 -2.02 9.97 -39.43 -0.39 -2.41 16 24 C -0.12 -1.86 10.01 -39.56 -0.40 -2.26 16 25 C -0.15 -2.38 10.03 -39.57 -0.40 -2.78 16 26 C -0.07 -1.28 9.81 -39.36 -0.39 -1.66 16 27 C -0.08 -1.46 6.26 -104.94 -0.66 -2.12 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.43 6.57 -51.92 -0.34 0.09 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.17 2.34 8.06 -52.48 -0.42 1.92 16 40 H 0.05 0.98 7.17 -51.93 -0.37 0.60 16 41 H 0.04 0.85 7.57 -51.93 -0.39 0.46 16 42 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.12 2.01 7.25 -52.49 -0.38 1.63 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -29.84 384.71 -9.28 -39.11 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.32 Total: 3.30 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -3.74 Total: -19.55 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.78 Total: -39.21 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.12 Total: -3.99 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.67 Total: 14.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.84 -9.28 -39.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793144708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.499 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds