Wall clock time and date at job start Tue Mar 31 2020 10:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47517 * 2 1 4 4 H 1.09005 * 109.46348 * 54.99929 * 3 2 1 5 5 C 1.52997 * 109.47128 * 295.00600 * 3 2 1 6 6 C 1.52992 * 109.47449 * 174.99999 * 3 2 1 7 7 O 1.42901 * 109.47471 * 185.00081 * 6 3 2 8 8 N 1.41595 * 114.00326 * 180.02562 * 7 6 3 9 9 C 1.29584 * 120.00016 * 180.02562 * 8 7 6 10 10 C 1.47148 * 119.99910 * 180.02562 * 9 8 7 11 11 C 1.36098 * 126.72408 * 180.02562 * 10 9 8 12 12 N 1.36037 * 109.72845 * 179.97438 * 11 10 9 13 13 C 1.46498 * 124.84634 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47083 * 264.97318 * 13 12 11 15 15 H 1.08000 * 119.99919 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00202 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00220 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99852 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46945 * 90.00257 * 18 16 14 20 20 H 1.48504 * 109.47021 * 209.99946 * 18 16 14 21 21 H 1.48495 * 109.46978 * 329.99788 * 18 16 14 22 22 C 1.37893 * 110.31092 * 359.97438 * 12 11 10 23 23 C 1.39142 * 133.18882 * 180.02562 * 22 12 11 24 24 C 1.37743 * 119.92639 * 179.97438 * 23 22 12 25 25 C 1.38782 * 120.64381 * 359.97438 * 24 23 22 26 26 C 1.37725 * 120.31491 * 0.02562 * 25 24 23 27 27 C 1.39335 * 119.67288 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46273 * 299.99468 * 1 2 3 29 29 H 1.08997 * 109.47011 * 59.99623 * 1 2 3 30 30 H 1.08994 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47003 * 240.00608 * 2 1 3 32 32 H 1.09003 * 109.47359 * 120.00644 * 2 1 3 33 33 H 1.09003 * 109.47266 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47231 * 299.99666 * 5 3 2 35 35 H 1.09008 * 109.47463 * 59.99619 * 5 3 2 36 36 H 1.09000 * 109.46777 * 65.00445 * 6 3 2 37 37 H 1.08999 * 109.47523 * 305.00886 * 6 3 2 38 38 H 1.08004 * 120.00009 * 359.97438 * 9 8 7 39 39 H 1.08003 * 125.13611 * 359.93613 * 11 10 9 40 40 H 1.08996 * 109.47391 * 24.96909 * 13 12 11 41 41 H 1.08995 * 109.47444 * 144.97163 * 13 12 11 42 42 H 0.97001 * 120.00050 * 180.02562 * 17 16 14 43 43 H 1.08000 * 120.03735 * 359.97438 * 23 22 12 44 44 H 1.08002 * 119.68117 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.84516 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.16411 * 179.72212 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 8 4.0316 2.7898 0.2429 8 7 5.4378 2.9032 0.3647 9 6 5.9862 4.0717 0.4787 10 6 7.4475 4.1895 0.6048 11 6 8.1633 5.3400 0.7318 12 7 9.4889 5.0484 0.8230 13 6 10.5562 6.0412 0.9699 14 6 11.1222 6.3747 -0.3863 15 1 10.7268 5.8948 -1.2694 16 6 12.1448 7.2925 -0.4999 17 7 12.6391 7.5832 -1.6834 18 14 12.8293 8.1220 1.0276 19 1 13.9497 7.3125 1.5704 20 1 13.3231 9.4775 0.6755 21 1 11.7591 8.2353 2.0508 22 6 9.6847 3.6850 0.7585 23 6 10.8206 2.8828 0.8045 24 6 10.6992 1.5137 0.7141 25 6 9.4514 0.9217 0.5776 26 6 8.3150 1.6983 0.5301 27 6 8.4227 3.0846 0.6193 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.9983 3.1544 -1.3071 34 1 2.0698 1.5876 -2.1492 35 1 0.5489 2.1253 -1.3968 36 1 4.0029 0.9836 -0.7597 37 1 3.8572 0.8799 1.0112 38 1 5.3707 4.9592 0.4803 39 1 7.7425 6.3344 0.7559 40 1 10.1519 6.9444 1.4269 41 1 11.3452 5.6355 1.6031 42 1 13.3589 8.2286 -1.7633 43 1 11.7965 3.3331 0.9109 44 1 11.5836 0.8948 0.7498 45 1 9.3711 -0.1530 0.5075 46 1 7.3456 1.2354 0.4193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793144708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:14 Heat of formation + Delta-G solvation = 37.639055 kcal Electronic energy + Delta-G solvation = -24775.859768 eV Core-core repulsion = 21245.602340 eV Total energy + Delta-G solvation = -3530.257428 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18400 -38.96612 -37.94201 -37.12242 -35.60247 -34.68572 -32.82863 -31.33378 -30.70401 -29.91932 -28.86689 -27.48163 -25.03180 -24.14262 -23.56844 -23.21780 -21.68965 -20.99974 -20.16669 -19.21491 -18.33960 -17.71682 -17.11619 -16.78270 -16.46291 -16.22003 -15.96034 -15.65271 -15.41297 -15.03562 -14.89923 -14.83481 -14.45470 -14.20724 -14.03151 -13.71025 -13.46152 -13.38256 -13.16171 -12.91363 -12.83617 -12.62701 -12.52914 -12.42915 -12.31721 -11.86439 -11.82455 -11.73296 -11.68730 -11.57902 -11.46927 -10.94448 -10.88979 -10.67752 -10.06099 -9.06514 -8.40491 -8.32422 -6.51038 0.09977 0.65368 0.98559 1.36060 1.36692 1.46491 1.73049 2.16825 2.26405 2.30881 2.93326 3.09107 3.74124 3.82730 3.87003 3.90182 3.95337 4.07771 4.25999 4.32458 4.39587 4.39713 4.46030 4.60268 4.61069 4.65402 4.69902 4.71639 4.77932 4.80878 4.85103 4.93279 4.94906 5.06211 5.12674 5.17322 5.20278 5.22502 5.24898 5.42857 5.48723 5.53821 5.64373 5.75683 5.85015 5.98939 6.01606 6.39593 6.45680 6.56939 6.74923 7.14054 8.76585 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.002533 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.716709 B =11049.362635 C =11940.956524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.083 4.083 4 H 0.075 0.925 5 C -0.144 4.144 6 C 0.080 3.920 7 O -0.262 6.262 8 N -0.378 5.378 9 C 0.203 3.797 10 C -0.198 4.198 11 C 0.125 3.875 12 N -0.454 5.454 13 C 0.214 3.786 14 C -0.551 4.551 15 H 0.027 0.973 16 C 0.020 3.980 17 N -0.938 5.938 18 Si 0.949 3.051 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.233 1.233 22 C 0.068 3.932 23 C -0.135 4.135 24 C -0.108 4.108 25 C -0.146 4.146 26 C -0.084 4.084 27 C -0.099 4.099 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.143 0.857 39 H 0.206 0.794 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.272 0.728 43 H 0.114 0.886 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 -11.935 7.503 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.094 0.906 5 C -0.201 4.201 6 C 0.003 3.997 7 O -0.275 6.275 8 N -0.126 5.126 9 C -0.005 4.005 10 C -0.207 4.207 11 C -0.012 4.012 12 N -0.131 5.131 13 C 0.094 3.906 14 C -0.589 4.589 15 H 0.045 0.955 16 C -0.180 4.180 17 N -0.576 5.576 18 Si 0.771 3.229 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.156 1.156 22 C -0.038 4.038 23 C -0.156 4.156 24 C -0.127 4.127 25 C -0.165 4.165 26 C -0.102 4.102 27 C -0.103 4.103 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.160 0.840 39 H 0.223 0.777 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.167 0.833 45 H 0.167 0.833 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.373 -12.407 7.387 22.590 hybrid contribution 0.612 1.365 -0.129 1.502 sum -16.761 -11.041 7.258 21.343 Atomic orbital electron populations 1.21792 0.94384 1.02347 1.02258 1.21485 0.97019 0.93969 1.02680 1.21194 0.91407 0.98163 0.99549 0.90609 1.21826 1.01989 1.00004 0.96318 1.22573 0.94590 0.82103 1.00391 1.89710 1.14821 1.29714 1.93278 1.76807 0.92648 1.24796 1.18317 1.23407 0.91790 0.95008 0.90298 1.18302 0.89712 0.91791 1.20872 1.22486 0.81830 0.99982 0.96869 1.44250 1.06912 1.05050 1.56901 1.19932 0.86113 0.87923 0.96640 1.21314 1.19824 1.25331 0.92418 0.95459 1.25845 0.95865 0.96485 0.99784 1.70043 1.27209 1.34550 1.25810 0.85703 0.80093 0.78043 0.79108 1.18999 1.20575 1.15635 1.18647 0.96156 0.83592 1.05373 1.20345 0.95906 0.94090 1.05211 1.21076 0.98817 0.92785 1.00064 1.21210 0.91573 1.00684 1.02994 1.20687 0.99322 0.91018 0.99213 1.19259 0.91430 0.94055 1.05577 0.92566 0.92109 0.91731 0.91416 0.91416 0.93782 0.92820 0.90842 0.93380 0.93004 0.84035 0.77746 0.91078 0.93426 0.91890 0.86796 0.83265 0.83255 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.67 71.98 0.70 -0.93 16 2 C -0.11 -1.52 5.40 30.60 0.17 -1.36 16 3 C -0.08 -1.46 2.63 -10.80 -0.03 -1.49 16 4 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 5 C -0.14 -2.50 8.84 71.98 0.64 -1.86 16 6 C 0.08 1.87 5.78 71.98 0.42 2.29 16 7 O -0.26 -7.76 10.90 -38.77 -0.42 -8.18 16 8 N -0.38 -12.24 10.14 -52.50 -0.53 -12.77 16 9 C 0.20 6.19 11.14 87.37 0.97 7.16 16 10 C -0.20 -6.83 6.27 -19.03 -0.12 -6.95 16 11 C 0.12 4.25 11.23 83.54 0.94 5.19 16 12 N -0.45 -18.38 2.74 -519.09 -1.42 -19.80 16 13 C 0.21 9.16 4.79 85.63 0.41 9.57 16 14 C -0.55 -29.68 9.94 25.60 0.25 -29.42 16 15 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 16 C 0.02 1.08 5.47 84.65 0.46 1.54 16 17 N -0.94 -55.65 13.96 21.45 0.30 -55.35 16 18 Si 0.95 39.17 27.47 68.60 1.88 41.06 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 22 C 0.07 2.76 6.79 38.94 0.26 3.02 16 23 C -0.14 -5.10 9.97 22.37 0.22 -4.88 16 24 C -0.11 -3.34 10.01 22.28 0.22 -3.12 16 25 C -0.15 -4.28 10.03 22.28 0.22 -4.06 16 26 C -0.08 -2.83 9.81 22.41 0.22 -2.61 16 27 C -0.10 -3.75 6.26 -20.07 -0.13 -3.87 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.63 6.56 -2.39 -0.02 0.61 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.91 7.82 -2.39 -0.02 0.89 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.01 6.57 -2.38 -0.02 0.99 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 39 H 0.21 5.26 8.06 -2.91 -0.02 5.23 16 40 H 0.07 2.72 7.17 -2.39 -0.02 2.70 16 41 H 0.05 1.97 7.57 -2.39 -0.02 1.95 16 42 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 44 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 45 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 46 H 0.13 4.10 7.25 -2.91 -0.02 4.08 16 Total: -1.00 -67.62 384.71 6.53 -61.09 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.89 Total: 25.75 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 5.83 Total: -31.79 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -1.66 Total: -87.93 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.42 Total: -8.18 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.88 Total: 41.06 kcal Total: -67.62 6.53 -61.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793144708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.727 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds