Wall clock time and date at job start Tue Mar 31 2020 10:41:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3
5 5 C 1.46841 * 111.00009 * 299.21342 * 4 2 1
6 6 C 1.53040 * 109.52433 * 174.15732 * 5 4 2
7 7 C 1.53121 * 109.27699 * 59.17931 * 6 5 4
8 8 C 1.53007 * 109.52149 * 182.43884 * 7 6 5
9 9 C 1.52997 * 109.47355 * 294.68290 * 8 7 6
10 10 N 1.46501 * 109.47236 * 179.97438 * 9 8 7
11 11 C 1.34771 * 120.00109 * 180.02562 * 10 9 8
12 12 O 1.21284 * 119.99814 * 359.97438 * 11 10 9
13 13 C 1.50695 * 120.00157 * 180.02562 * 11 10 9
14 14 S 1.80997 * 109.47408 * 180.02562 * 13 11 10
15 15 C 1.76196 * 100.00207 * 179.97438 * 14 13 11
16 16 H 1.07999 * 120.00246 * 359.97438 * 15 14 13
17 17 C 1.38799 * 119.99904 * 179.97438 * 15 14 13
18 18 N 1.31633 * 119.99876 * 180.02562 * 17 15 14
19 19 Si 1.86799 * 120.00331 * 359.97438 * 17 15 14
20 20 H 1.48501 * 109.46990 * 89.99828 * 19 17 15
21 21 H 1.48497 * 109.47078 * 210.00208 * 19 17 15
22 22 H 1.48509 * 109.46936 * 330.00112 * 19 17 15
23 23 C 1.53121 * 109.15988 * 302.34517 * 7 6 5
24 24 C 1.46850 * 111.00522 * 174.99713 * 4 2 1
25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3
29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1
30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1
31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1
32 32 H 1.09001 * 109.46345 * 294.17005 * 5 4 2
33 33 H 1.09000 * 109.46432 * 54.14079 * 5 4 2
34 34 H 1.08997 * 109.50332 * 299.23389 * 6 5 4
35 35 H 1.08998 * 109.50497 * 179.11583 * 6 5 4
36 36 H 1.09001 * 109.57729 * 62.28139 * 7 6 5
37 37 H 1.08999 * 109.46648 * 54.68109 * 8 7 6
38 38 H 1.08997 * 109.46565 * 174.67784 * 8 7 6
39 39 H 1.08997 * 109.47070 * 300.00094 * 9 8 7
40 40 H 1.09001 * 109.47009 * 59.99996 * 9 8 7
41 41 H 0.96995 * 119.99757 * 359.97438 * 10 9 8
42 42 H 1.09008 * 109.46725 * 299.99543 * 13 11 10
43 43 H 1.08998 * 109.47600 * 59.99570 * 13 11 10
44 44 H 0.96999 * 120.00261 * 180.02562 * 18 17 15
45 45 H 1.08999 * 109.49895 * 297.71693 * 23 7 6
46 46 H 1.08996 * 109.53497 * 177.62117 * 23 7 6
47 47 H 1.08998 * 109.46273 * 305.86025 * 24 4 2
48 48 H 1.09004 * 109.45486 * 65.83539 * 24 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0197 -0.6925 1.1993
5 6 1.5644 -0.0159 2.4205
6 6 1.9682 -0.8420 3.6438
7 6 3.4907 -1.0032 3.6648
8 6 3.8958 -1.8794 4.8519
9 6 3.5546 -1.1586 6.1576
10 7 3.9419 -1.9978 7.2943
11 6 3.7344 -1.5645 8.5535
12 8 3.2275 -0.4796 8.7456
13 6 4.1334 -2.4274 9.7227
14 16 3.7282 -1.5755 11.2674
15 6 4.2836 -2.7746 12.4329
16 1 4.7180 -3.7015 12.0887
17 6 4.1628 -2.5278 13.7934
18 7 4.5781 -3.4234 14.6642
19 14 3.4121 -0.9243 14.3889
20 1 1.9444 -1.0914 14.5413
21 1 4.0070 -0.5555 15.6985
22 1 3.6880 0.1487 13.4000
23 6 3.9438 -1.6664 2.3611
24 6 3.4828 -0.8165 1.1750
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5139 -0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 1.6767 1.9563 0.8900
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9564 -0.8899
32 1 2.0229 0.9711 2.4813
33 1 0.4797 0.0887 2.3948
34 1 1.4988 -1.8243 3.5906
35 1 1.6438 -0.3317 4.5507
36 1 3.9604 -0.0240 3.7577
37 1 3.3552 -2.8248 4.8068
38 1 4.9680 -2.0716 4.8124
39 1 4.0951 -0.2132 6.2027
40 1 2.4824 -0.9664 6.1971
41 1 4.3470 -2.8656 7.1406
42 1 3.5931 -3.3731 9.6773
43 1 5.2056 -2.6194 9.6836
44 1 4.4934 -3.2512 15.6150
45 1 3.5056 -2.6617 2.2878
46 1 5.0309 -1.7458 2.3513
47 1 3.7914 -1.2933 0.2448
48 1 3.9323 0.1743 1.2419
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000870959290.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:41:49
Heat of formation + Delta-G solvation = -59.328198 kcal
Electronic energy + Delta-G solvation = -23563.666249 eV
Core-core repulsion = 20164.647957 eV
Total energy + Delta-G solvation = -3399.018292 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.09489 -39.19017 -36.77194 -34.52515 -32.42966 -32.08324 -31.17974 -29.90954
-28.05685 -27.65762 -25.61575 -24.50312 -23.72167 -21.85536 -20.83848 -20.27498
-19.56165 -17.83181 -16.70547 -16.30255 -15.93883 -15.76853 -15.39778 -14.96707
-14.94414 -14.71949 -14.52452 -14.11483 -13.94481 -13.68910 -13.41541 -13.22527
-13.06972 -12.78541 -12.52411 -12.36077 -12.25777 -12.00028 -11.97057 -11.70680
-11.52410 -11.34811 -11.25729 -11.10726 -11.00014 -10.95251 -10.65640 -10.51277
-10.42346 -9.84504 -9.48771 -9.00271 -8.91411 -8.62922 -8.48673 -6.90520
-6.27939 -3.99521 2.79135 3.01069 3.32555 3.36051 3.49334 3.51558
3.68279 4.32346 4.34175 4.42158 4.43046 4.49555 4.67293 4.74111
4.82755 4.90189 4.92305 4.97570 5.06697 5.11086 5.13579 5.18005
5.24074 5.26241 5.33201 5.35836 5.40429 5.44441 5.48692 5.53127
5.64105 5.66877 5.74078 5.77087 5.79406 5.82861 5.86731 5.91471
6.01335 6.03420 6.15312 6.57817 6.76084 6.76521 7.65113 7.95142
8.42641 8.52717 9.18278 10.81264
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.037096 B = 0.001914 C = 0.001861
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 754.624946 B =14628.237011 C =15038.982733
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.075 3.925
3 C -0.188 4.188
4 N -0.531 5.531
5 C 0.049 3.951
6 C -0.116 4.116
7 C -0.084 4.084
8 C -0.125 4.125
9 C 0.120 3.880
10 N -0.738 5.738
11 C 0.529 3.471
12 O -0.521 6.521
13 C -0.124 4.124
14 S -0.143 6.143
15 C -0.521 4.521
16 H 0.088 0.912
17 C 0.095 3.905
18 N -0.880 5.880
19 Si 0.857 3.143
20 H -0.267 1.267
21 H -0.274 1.274
22 H -0.235 1.235
23 C -0.110 4.110
24 C 0.054 3.946
25 H 0.057 0.943
26 H 0.063 0.937
27 H 0.058 0.942
28 H 0.081 0.919
29 H 0.059 0.941
30 H 0.055 0.945
31 H 0.060 0.940
32 H 0.036 0.964
33 H 0.078 0.922
34 H 0.072 0.928
35 H 0.071 0.929
36 H 0.070 0.930
37 H 0.071 0.929
38 H 0.069 0.931
39 H 0.063 0.937
40 H 0.067 0.933
41 H 0.399 0.601
42 H 0.097 0.903
43 H 0.097 0.903
44 H 0.271 0.729
45 H 0.072 0.928
46 H 0.067 0.933
47 H 0.072 0.928
48 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.465 4.674 -32.293 32.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.033 4.033
3 C -0.247 4.247
4 N -0.256 5.256
5 C -0.078 4.078
6 C -0.154 4.154
7 C -0.103 4.103
8 C -0.163 4.163
9 C -0.004 4.004
10 N -0.392 5.392
11 C 0.315 3.685
12 O -0.396 6.396
13 C -0.275 4.275
14 S 0.084 5.916
15 C -0.669 4.669
16 H 0.106 0.894
17 C -0.113 4.113
18 N -0.517 5.517
19 Si 0.682 3.318
20 H -0.192 1.192
21 H -0.200 1.200
22 H -0.159 1.159
23 C -0.148 4.148
24 C -0.074 4.074
25 H 0.076 0.924
26 H 0.082 0.918
27 H 0.077 0.923
28 H 0.099 0.901
29 H 0.078 0.922
30 H 0.074 0.926
31 H 0.079 0.921
32 H 0.054 0.946
33 H 0.096 0.904
34 H 0.091 0.909
35 H 0.090 0.910
36 H 0.088 0.912
37 H 0.090 0.910
38 H 0.088 0.912
39 H 0.081 0.919
40 H 0.085 0.915
41 H 0.233 0.767
42 H 0.115 0.885
43 H 0.115 0.885
44 H 0.080 0.920
45 H 0.091 0.909
46 H 0.085 0.915
47 H 0.090 0.910
48 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -4.487 5.964 -31.779 32.644
hybrid contribution 0.920 -0.333 0.198 0.999
sum -3.567 5.631 -31.581 32.277
Atomic orbital electron populations
1.21884 0.94258 1.02517 1.01718 1.21693 0.95856 0.92353 0.93394
1.22495 1.01469 0.98264 1.02482 1.62187 1.10632 1.50976 1.01775
1.22180 1.00601 0.95506 0.89548 1.21735 0.95279 1.01243 0.97094
1.21124 0.96179 0.99095 0.93933 1.21825 1.01912 0.99339 0.93190
1.21349 1.00668 0.94135 0.84248 1.45983 1.65531 1.22193 1.05477
1.20276 0.77807 0.86926 0.83472 1.90695 1.42119 1.21758 1.85022
1.23282 1.05046 1.02308 0.96852 1.84782 1.82544 1.28342 0.95973
1.22323 1.47128 1.05048 0.92381 0.89388 1.24717 0.94036 0.97013
0.95574 1.69941 1.45182 1.34438 1.02151 0.86730 0.80360 0.84757
0.79972 1.19207 1.19956 1.15929 1.21627 1.00256 0.99729 0.93209
1.22083 0.87528 0.98748 0.98996 0.92417 0.91778 0.92339 0.90123
0.92226 0.92552 0.92122 0.94624 0.90391 0.90919 0.91006 0.91198
0.91041 0.91215 0.91858 0.91476 0.76723 0.88516 0.88491 0.91959
0.90943 0.91483 0.90962 0.94708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.83 8.99 37.16 0.33 -0.50 16
2 C 0.08 0.46 2.96 -67.72 -0.20 0.26 16
3 C -0.19 -1.09 8.50 37.16 0.32 -0.77 16
4 N -0.53 -3.81 4.64 -226.70 -1.05 -4.86 16
5 C 0.05 0.36 4.63 -3.84 -0.02 0.35 16
6 C -0.12 -0.89 5.08 -26.65 -0.14 -1.03 16
7 C -0.08 -0.61 2.25 -90.49 -0.20 -0.81 16
8 C -0.12 -0.95 4.80 -26.73 -0.13 -1.08 16
9 C 0.12 1.32 5.44 -4.04 -0.02 1.30 16
10 N -0.74 -9.43 5.56 -60.30 -0.33 -9.76 16
11 C 0.53 9.53 7.85 -10.99 -0.09 9.44 16
12 O -0.52 -11.44 15.86 5.55 0.09 -11.35 16
13 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16
14 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16
15 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16
16 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16
17 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16
18 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16
19 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16
20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
21 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16
22 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16
23 C -0.11 -0.72 5.38 -26.65 -0.14 -0.86 16
24 C 0.05 0.36 5.02 -3.84 -0.02 0.34 16
25 H 0.06 0.34 6.30 -51.93 -0.33 0.02 16
26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16
28 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16
29 H 0.06 0.38 6.52 -51.93 -0.34 0.04 16
30 H 0.06 0.34 6.65 -51.93 -0.35 -0.01 16
31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
32 H 0.04 0.27 6.62 -51.93 -0.34 -0.07 16
33 H 0.08 0.56 6.03 -51.93 -0.31 0.25 16
34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
35 H 0.07 0.59 6.71 -51.93 -0.35 0.25 16
36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
40 H 0.07 0.80 6.64 -51.93 -0.34 0.46 16
41 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16
42 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16
43 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16
44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16
45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
47 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16
48 H 0.03 0.24 6.73 -51.93 -0.35 -0.11 16
LS Contribution 380.73 15.07 5.74 5.74
Total: -1.00 -33.46 380.73 -9.91 -43.37
By element:
Atomic # 1 Polarization: 7.43 SS G_CDS: -8.55 Total: -1.12 kcal
Atomic # 6 Polarization: -7.80 SS G_CDS: 0.13 Total: -7.67 kcal
Atomic # 7 Polarization: -39.92 SS G_CDS: -0.61 Total: -40.53 kcal
Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal
Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -33.46 -9.91 -43.37 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000870959290.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.961 kcal
(2) G-P(sol) polarization free energy of solvation -33.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.418 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.328 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds