Wall clock time and date at job start Tue Mar 31 2020 10:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.46841 * 111.00009 * 299.21342 * 4 2 1 6 6 C 1.53040 * 109.52433 * 174.15732 * 5 4 2 7 7 C 1.53121 * 109.27699 * 59.17931 * 6 5 4 8 8 C 1.53007 * 109.52149 * 182.43884 * 7 6 5 9 9 C 1.52997 * 109.47355 * 294.68290 * 8 7 6 10 10 N 1.46501 * 109.47236 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00109 * 180.02562 * 10 9 8 12 12 O 1.21284 * 119.99814 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00157 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.47408 * 180.02562 * 13 11 10 15 15 C 1.76196 * 100.00207 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00246 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99904 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99876 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00331 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46990 * 89.99828 * 19 17 15 21 21 H 1.48497 * 109.47078 * 210.00208 * 19 17 15 22 22 H 1.48509 * 109.46936 * 330.00112 * 19 17 15 23 23 C 1.53121 * 109.15988 * 302.34517 * 7 6 5 24 24 C 1.46850 * 111.00522 * 174.99713 * 4 2 1 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.46345 * 294.17005 * 5 4 2 33 33 H 1.09000 * 109.46432 * 54.14079 * 5 4 2 34 34 H 1.08997 * 109.50332 * 299.23389 * 6 5 4 35 35 H 1.08998 * 109.50497 * 179.11583 * 6 5 4 36 36 H 1.09001 * 109.57729 * 62.28139 * 7 6 5 37 37 H 1.08999 * 109.46648 * 54.68109 * 8 7 6 38 38 H 1.08997 * 109.46565 * 174.67784 * 8 7 6 39 39 H 1.08997 * 109.47070 * 300.00094 * 9 8 7 40 40 H 1.09001 * 109.47009 * 59.99996 * 9 8 7 41 41 H 0.96995 * 119.99757 * 359.97438 * 10 9 8 42 42 H 1.09008 * 109.46725 * 299.99543 * 13 11 10 43 43 H 1.08998 * 109.47600 * 59.99570 * 13 11 10 44 44 H 0.96999 * 120.00261 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.49895 * 297.71693 * 23 7 6 46 46 H 1.08996 * 109.53497 * 177.62117 * 23 7 6 47 47 H 1.08998 * 109.46273 * 305.86025 * 24 4 2 48 48 H 1.09004 * 109.45486 * 65.83539 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5644 -0.0159 2.4205 6 6 1.9682 -0.8420 3.6438 7 6 3.4907 -1.0032 3.6648 8 6 3.8958 -1.8794 4.8519 9 6 3.5546 -1.1586 6.1576 10 7 3.9419 -1.9978 7.2943 11 6 3.7344 -1.5645 8.5535 12 8 3.2275 -0.4796 8.7456 13 6 4.1334 -2.4274 9.7227 14 16 3.7282 -1.5755 11.2674 15 6 4.2836 -2.7746 12.4329 16 1 4.7180 -3.7015 12.0887 17 6 4.1628 -2.5278 13.7934 18 7 4.5781 -3.4234 14.6642 19 14 3.4121 -0.9243 14.3889 20 1 1.9444 -1.0914 14.5413 21 1 4.0070 -0.5555 15.6985 22 1 3.6880 0.1487 13.4000 23 6 3.9438 -1.6664 2.3611 24 6 3.4828 -0.8165 1.1750 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 2.0229 0.9711 2.4813 33 1 0.4797 0.0887 2.3948 34 1 1.4988 -1.8243 3.5906 35 1 1.6438 -0.3317 4.5507 36 1 3.9604 -0.0240 3.7577 37 1 3.3552 -2.8248 4.8068 38 1 4.9680 -2.0716 4.8124 39 1 4.0951 -0.2132 6.2027 40 1 2.4824 -0.9664 6.1971 41 1 4.3470 -2.8656 7.1406 42 1 3.5931 -3.3731 9.6773 43 1 5.2056 -2.6194 9.6836 44 1 4.4934 -3.2512 15.6150 45 1 3.5056 -2.6617 2.2878 46 1 5.0309 -1.7458 2.3513 47 1 3.7914 -1.2933 0.2448 48 1 3.9323 0.1743 1.2419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870959290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:49 Heat of formation + Delta-G solvation = -59.328198 kcal Electronic energy + Delta-G solvation = -23563.666249 eV Core-core repulsion = 20164.647957 eV Total energy + Delta-G solvation = -3399.018292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09489 -39.19017 -36.77194 -34.52515 -32.42966 -32.08324 -31.17974 -29.90954 -28.05685 -27.65762 -25.61575 -24.50312 -23.72167 -21.85536 -20.83848 -20.27498 -19.56165 -17.83181 -16.70547 -16.30255 -15.93883 -15.76853 -15.39778 -14.96707 -14.94414 -14.71949 -14.52452 -14.11483 -13.94481 -13.68910 -13.41541 -13.22527 -13.06972 -12.78541 -12.52411 -12.36077 -12.25777 -12.00028 -11.97057 -11.70680 -11.52410 -11.34811 -11.25729 -11.10726 -11.00014 -10.95251 -10.65640 -10.51277 -10.42346 -9.84504 -9.48771 -9.00271 -8.91411 -8.62922 -8.48673 -6.90520 -6.27939 -3.99521 2.79135 3.01069 3.32555 3.36051 3.49334 3.51558 3.68279 4.32346 4.34175 4.42158 4.43046 4.49555 4.67293 4.74111 4.82755 4.90189 4.92305 4.97570 5.06697 5.11086 5.13579 5.18005 5.24074 5.26241 5.33201 5.35836 5.40429 5.44441 5.48692 5.53127 5.64105 5.66877 5.74078 5.77087 5.79406 5.82861 5.86731 5.91471 6.01335 6.03420 6.15312 6.57817 6.76084 6.76521 7.65113 7.95142 8.42641 8.52717 9.18278 10.81264 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.037096 B = 0.001914 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.624946 B =14628.237011 C =15038.982733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.531 5.531 5 C 0.049 3.951 6 C -0.116 4.116 7 C -0.084 4.084 8 C -0.125 4.125 9 C 0.120 3.880 10 N -0.738 5.738 11 C 0.529 3.471 12 O -0.521 6.521 13 C -0.124 4.124 14 S -0.143 6.143 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.110 4.110 24 C 0.054 3.946 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 4.674 -32.293 32.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.256 5.256 5 C -0.078 4.078 6 C -0.154 4.154 7 C -0.103 4.103 8 C -0.163 4.163 9 C -0.004 4.004 10 N -0.392 5.392 11 C 0.315 3.685 12 O -0.396 6.396 13 C -0.275 4.275 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.148 4.148 24 C -0.074 4.074 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.487 5.964 -31.779 32.644 hybrid contribution 0.920 -0.333 0.198 0.999 sum -3.567 5.631 -31.581 32.277 Atomic orbital electron populations 1.21884 0.94258 1.02517 1.01718 1.21693 0.95856 0.92353 0.93394 1.22495 1.01469 0.98264 1.02482 1.62187 1.10632 1.50976 1.01775 1.22180 1.00601 0.95506 0.89548 1.21735 0.95279 1.01243 0.97094 1.21124 0.96179 0.99095 0.93933 1.21825 1.01912 0.99339 0.93190 1.21349 1.00668 0.94135 0.84248 1.45983 1.65531 1.22193 1.05477 1.20276 0.77807 0.86926 0.83472 1.90695 1.42119 1.21758 1.85022 1.23282 1.05046 1.02308 0.96852 1.84782 1.82544 1.28342 0.95973 1.22323 1.47128 1.05048 0.92381 0.89388 1.24717 0.94036 0.97013 0.95574 1.69941 1.45182 1.34438 1.02151 0.86730 0.80360 0.84757 0.79972 1.19207 1.19956 1.15929 1.21627 1.00256 0.99729 0.93209 1.22083 0.87528 0.98748 0.98996 0.92417 0.91778 0.92339 0.90123 0.92226 0.92552 0.92122 0.94624 0.90391 0.90919 0.91006 0.91198 0.91041 0.91215 0.91858 0.91476 0.76723 0.88516 0.88491 0.91959 0.90943 0.91483 0.90962 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.99 37.16 0.33 -0.50 16 2 C 0.08 0.46 2.96 -67.72 -0.20 0.26 16 3 C -0.19 -1.09 8.50 37.16 0.32 -0.77 16 4 N -0.53 -3.81 4.64 -226.70 -1.05 -4.86 16 5 C 0.05 0.36 4.63 -3.84 -0.02 0.35 16 6 C -0.12 -0.89 5.08 -26.65 -0.14 -1.03 16 7 C -0.08 -0.61 2.25 -90.49 -0.20 -0.81 16 8 C -0.12 -0.95 4.80 -26.73 -0.13 -1.08 16 9 C 0.12 1.32 5.44 -4.04 -0.02 1.30 16 10 N -0.74 -9.43 5.56 -60.30 -0.33 -9.76 16 11 C 0.53 9.53 7.85 -10.99 -0.09 9.44 16 12 O -0.52 -11.44 15.86 5.55 0.09 -11.35 16 13 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 14 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 15 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 16 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 19 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 23 C -0.11 -0.72 5.38 -26.65 -0.14 -0.86 16 24 C 0.05 0.36 5.02 -3.84 -0.02 0.34 16 25 H 0.06 0.34 6.30 -51.93 -0.33 0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.06 0.38 6.52 -51.93 -0.34 0.04 16 30 H 0.06 0.34 6.65 -51.93 -0.35 -0.01 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.04 0.27 6.62 -51.93 -0.34 -0.07 16 33 H 0.08 0.56 6.03 -51.93 -0.31 0.25 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.59 6.71 -51.93 -0.35 0.25 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.80 6.64 -51.93 -0.34 0.46 16 41 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 42 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 43 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 48 H 0.03 0.24 6.73 -51.93 -0.35 -0.11 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -33.46 380.73 -9.91 -43.37 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.55 Total: -1.12 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 0.13 Total: -7.67 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.61 Total: -40.53 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.46 -9.91 -43.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870959290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.961 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds