Wall clock time and date at job start Tue Mar 31 2020 10:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.46841 * 111.00009 * 299.21342 * 4 2 1 6 6 C 1.53040 * 109.52433 * 174.15732 * 5 4 2 7 7 C 1.53121 * 109.27699 * 59.17931 * 6 5 4 8 8 C 1.53007 * 109.52149 * 182.43884 * 7 6 5 9 9 C 1.52997 * 109.47355 * 294.68290 * 8 7 6 10 10 N 1.46501 * 109.47236 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00109 * 180.02562 * 10 9 8 12 12 O 1.21284 * 119.99814 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00157 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.47408 * 180.02562 * 13 11 10 15 15 C 1.76196 * 100.00207 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00246 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99904 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99876 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00331 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46990 * 89.99828 * 19 17 15 21 21 H 1.48497 * 109.47078 * 210.00208 * 19 17 15 22 22 H 1.48509 * 109.46936 * 330.00112 * 19 17 15 23 23 C 1.53121 * 109.15988 * 302.34517 * 7 6 5 24 24 C 1.46850 * 111.00522 * 174.99713 * 4 2 1 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.46345 * 294.17005 * 5 4 2 33 33 H 1.09000 * 109.46432 * 54.14079 * 5 4 2 34 34 H 1.08997 * 109.50332 * 299.23389 * 6 5 4 35 35 H 1.08998 * 109.50497 * 179.11583 * 6 5 4 36 36 H 1.09001 * 109.57729 * 62.28139 * 7 6 5 37 37 H 1.08999 * 109.46648 * 54.68109 * 8 7 6 38 38 H 1.08997 * 109.46565 * 174.67784 * 8 7 6 39 39 H 1.08997 * 109.47070 * 300.00094 * 9 8 7 40 40 H 1.09001 * 109.47009 * 59.99996 * 9 8 7 41 41 H 0.96995 * 119.99757 * 359.97438 * 10 9 8 42 42 H 1.09008 * 109.46725 * 299.99543 * 13 11 10 43 43 H 1.08998 * 109.47600 * 59.99570 * 13 11 10 44 44 H 0.96999 * 120.00261 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.49895 * 297.71693 * 23 7 6 46 46 H 1.08996 * 109.53497 * 177.62117 * 23 7 6 47 47 H 1.08998 * 109.46273 * 305.86025 * 24 4 2 48 48 H 1.09004 * 109.45486 * 65.83539 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5644 -0.0159 2.4205 6 6 1.9682 -0.8420 3.6438 7 6 3.4907 -1.0032 3.6648 8 6 3.8958 -1.8794 4.8519 9 6 3.5546 -1.1586 6.1576 10 7 3.9419 -1.9978 7.2943 11 6 3.7344 -1.5645 8.5535 12 8 3.2275 -0.4796 8.7456 13 6 4.1334 -2.4274 9.7227 14 16 3.7282 -1.5755 11.2674 15 6 4.2836 -2.7746 12.4329 16 1 4.7180 -3.7015 12.0887 17 6 4.1628 -2.5278 13.7934 18 7 4.5781 -3.4234 14.6642 19 14 3.4121 -0.9243 14.3889 20 1 1.9444 -1.0914 14.5413 21 1 4.0070 -0.5555 15.6985 22 1 3.6880 0.1487 13.4000 23 6 3.9438 -1.6664 2.3611 24 6 3.4828 -0.8165 1.1750 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 2.0229 0.9711 2.4813 33 1 0.4797 0.0887 2.3948 34 1 1.4988 -1.8243 3.5906 35 1 1.6438 -0.3317 4.5507 36 1 3.9604 -0.0240 3.7577 37 1 3.3552 -2.8248 4.8068 38 1 4.9680 -2.0716 4.8124 39 1 4.0951 -0.2132 6.2027 40 1 2.4824 -0.9664 6.1971 41 1 4.3470 -2.8656 7.1406 42 1 3.5931 -3.3731 9.6773 43 1 5.2056 -2.6194 9.6836 44 1 4.4934 -3.2512 15.6150 45 1 3.5056 -2.6617 2.2878 46 1 5.0309 -1.7458 2.3513 47 1 3.7914 -1.2933 0.2448 48 1 3.9323 0.1743 1.2419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870959290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:48 Heat of formation + Delta-G solvation = -81.871629 kcal Electronic energy + Delta-G solvation = -23564.643806 eV Core-core repulsion = 20164.647957 eV Total energy + Delta-G solvation = -3399.995848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82727 -40.38682 -37.50530 -35.55004 -34.67133 -32.87955 -31.75808 -31.12962 -28.99122 -28.11936 -27.84437 -25.28685 -24.29615 -22.53769 -21.89734 -21.14598 -20.13107 -19.85530 -17.84359 -17.38965 -17.10815 -16.95398 -16.80411 -16.06449 -15.75644 -15.72278 -15.29200 -15.14064 -14.96102 -14.87040 -14.59075 -14.44843 -13.94618 -13.68623 -13.61556 -13.34650 -13.03224 -13.00201 -12.92262 -12.80027 -12.62394 -12.54049 -12.24549 -12.16314 -11.96355 -11.86964 -11.61643 -11.56388 -11.23876 -11.17170 -11.00676 -10.90904 -10.53675 -10.10440 -9.16753 -8.99842 -8.51562 -6.22462 0.99291 1.31349 1.46953 1.56356 1.57055 2.23454 2.28139 2.72384 2.86567 2.98059 3.72424 3.80026 3.83167 3.92774 3.97561 4.16275 4.22093 4.25001 4.29593 4.38752 4.41220 4.46954 4.48371 4.51160 4.61746 4.69645 4.72099 4.77023 4.84146 4.92783 4.94083 5.00196 5.03425 5.08361 5.11855 5.20269 5.25175 5.30246 5.35778 5.39693 5.45845 5.56382 5.70741 6.11382 6.22309 6.25325 6.49021 6.93603 7.20835 8.60738 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.037096 B = 0.001914 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.624946 B =14628.237011 C =15038.982733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 C -0.183 4.183 4 N -0.539 5.539 5 C 0.052 3.948 6 C -0.114 4.114 7 C -0.080 4.080 8 C -0.112 4.112 9 C 0.119 3.881 10 N -0.712 5.712 11 C 0.533 3.467 12 O -0.566 6.566 13 C -0.111 4.111 14 S -0.178 6.178 15 C -0.529 4.529 16 H 0.063 0.937 17 C 0.045 3.955 18 N -0.916 5.916 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.259 1.259 22 H -0.237 1.237 23 C -0.105 4.105 24 C 0.053 3.947 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.417 0.583 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.277 0.723 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 4.797 -34.201 34.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 C -0.242 4.242 4 N -0.263 5.263 5 C -0.076 4.076 6 C -0.152 4.152 7 C -0.099 4.099 8 C -0.150 4.150 9 C -0.004 4.004 10 N -0.366 5.366 11 C 0.318 3.682 12 O -0.444 6.444 13 C -0.262 4.262 14 S 0.049 5.951 15 C -0.677 4.677 16 H 0.081 0.919 17 C -0.160 4.160 18 N -0.554 5.554 19 Si 0.736 3.264 20 H -0.187 1.187 21 H -0.183 1.183 22 H -0.161 1.161 23 C -0.143 4.143 24 C -0.074 4.074 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.254 0.746 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.324 6.046 -33.731 34.540 hybrid contribution 0.898 -0.451 0.625 1.183 sum -3.426 5.596 -33.106 33.750 Atomic orbital electron populations 1.21857 0.94006 1.02205 1.02012 1.21748 0.96079 0.92513 0.93136 1.22439 1.01268 0.98016 1.02476 1.62207 1.11079 1.51147 1.01897 1.22122 1.00523 0.95223 0.89714 1.21699 0.95753 1.00887 0.96856 1.21082 0.95651 0.98929 0.94278 1.21747 1.02903 0.99193 0.91128 1.21487 1.00050 0.94017 0.84840 1.45781 1.63738 1.22909 1.04162 1.19984 0.77652 0.86034 0.84537 1.90686 1.44527 1.23491 1.85745 1.23278 1.06413 1.02440 0.94099 1.84719 1.82770 1.28769 0.98886 1.22462 1.46723 1.04930 0.93551 0.91901 1.25566 0.94489 1.00111 0.95844 1.70016 1.46360 1.36261 1.02783 0.85865 0.79766 0.80836 0.79890 1.18688 1.18296 1.16141 1.21587 1.00928 0.99330 0.92451 1.22116 0.87159 0.98728 0.99438 0.92900 0.92349 0.91283 0.89671 0.93027 0.92752 0.91298 0.95105 0.90528 0.91313 0.91933 0.91641 0.90126 0.89797 0.92762 0.92336 0.74588 0.86806 0.86757 0.91366 0.91148 0.90324 0.90222 0.94966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.99 71.98 0.65 -0.84 16 2 C 0.07 0.81 2.96 44.92 0.13 0.95 16 3 C -0.18 -1.91 8.50 71.98 0.61 -1.30 16 4 N -0.54 -7.06 4.64 -871.15 -4.04 -11.11 16 5 C 0.05 0.73 4.63 86.33 0.40 1.13 16 6 C -0.11 -1.65 5.08 30.65 0.16 -1.49 16 7 C -0.08 -1.01 2.25 -10.71 -0.02 -1.04 16 8 C -0.11 -1.42 4.80 30.60 0.15 -1.27 16 9 C 0.12 2.42 5.44 86.38 0.47 2.89 16 10 N -0.71 -16.55 5.56 -463.08 -2.57 -19.13 16 11 C 0.53 18.38 7.85 87.66 0.69 19.07 16 12 O -0.57 -24.52 15.86 -3.04 -0.05 -24.57 16 13 C -0.11 -4.19 6.16 71.23 0.44 -3.75 16 14 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 15 C -0.53 -30.94 10.04 67.95 0.68 -30.26 16 16 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 17 C 0.05 2.67 5.50 84.86 0.47 3.14 16 18 N -0.92 -55.91 13.97 21.65 0.30 -55.61 16 19 Si 0.91 45.25 27.74 68.60 1.90 47.15 16 20 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 23 C -0.11 -1.13 5.38 30.64 0.16 -0.96 16 24 C 0.05 0.61 5.02 86.32 0.43 1.05 16 25 H 0.05 0.59 6.30 -2.39 -0.02 0.58 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.05 0.62 6.52 -2.39 -0.02 0.61 16 30 H 0.05 0.59 6.65 -2.39 -0.02 0.57 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.03 0.46 6.62 -2.39 -0.02 0.44 16 33 H 0.08 1.08 6.03 -2.39 -0.01 1.07 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.01 6.71 -2.39 -0.02 1.00 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.33 6.64 -2.39 -0.02 1.32 16 41 H 0.42 6.83 8.47 -92.71 -0.79 6.05 16 42 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.11 3.92 8.14 -2.40 -0.02 3.91 16 44 H 0.28 15.62 8.31 -92.71 -0.77 14.84 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 48 H 0.03 0.39 6.73 -2.39 -0.02 0.38 16 Total: -1.00 -72.12 380.73 0.01 -72.10 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.11 Total: 13.97 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 5.41 Total: -12.70 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -6.31 Total: -85.84 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -72.12 0.01 -72.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870959290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.769 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds