Wall clock time and date at job start Tue Mar 31 2020 10:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47580 * 148.05396 * 3 2 1 5 5 C 1.34774 * 120.00055 * 89.99491 * 4 3 2 6 6 O 1.21588 * 119.99879 * 354.59765 * 5 4 3 7 7 N 1.34775 * 119.99816 * 174.59961 * 5 4 3 8 8 C 1.46505 * 119.99770 * 184.12908 * 7 5 4 9 9 H 1.08994 * 109.47134 * 329.61823 * 8 7 5 10 10 C 1.53004 * 109.47250 * 89.62054 * 8 7 5 11 11 C 1.50699 * 109.46954 * 293.86301 * 10 8 7 12 12 H 1.08006 * 120.00280 * 4.49213 * 11 10 8 13 13 C 1.37874 * 120.00303 * 184.49837 * 11 10 8 14 14 N 1.31509 * 120.00687 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99495 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47238 * 90.00454 * 15 13 11 17 17 H 1.48504 * 109.47121 * 210.00049 * 15 13 11 18 18 H 1.48495 * 109.47335 * 330.00451 * 15 13 11 19 19 C 1.50704 * 109.46746 * 209.61765 * 8 7 5 20 20 C 1.38228 * 120.00213 * 319.72449 * 19 8 7 21 21 C 1.38231 * 120.00047 * 179.78787 * 20 19 8 22 22 C 1.38239 * 119.99950 * 0.44577 * 21 20 19 23 23 C 1.38233 * 119.99812 * 359.80521 * 22 21 20 24 24 C 1.38229 * 120.00053 * 359.97438 * 23 22 21 25 25 C 1.46496 * 119.99679 * 270.27930 * 4 3 2 26 26 C 1.53006 * 109.47199 * 304.18331 * 25 4 3 27 27 C 1.52995 * 109.47494 * 64.18475 * 25 4 3 28 28 H 4.40647 * 5.51423 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47218 * 28.05190 * 3 2 1 30 30 H 1.09004 * 109.47107 * 268.05700 * 3 2 1 31 31 H 0.96997 * 120.00429 * 4.12358 * 7 5 4 32 32 H 1.08997 * 109.47192 * 53.85845 * 10 8 7 33 33 H 1.08998 * 109.46884 * 173.86022 * 10 8 7 34 34 H 0.96996 * 120.00412 * 179.97438 * 14 13 11 35 35 H 1.08006 * 119.99795 * 0.02562 * 20 19 8 36 36 H 1.08003 * 120.00374 * 180.27506 * 21 20 19 37 37 H 1.07995 * 119.99753 * 179.83665 * 22 21 20 38 38 H 1.08000 * 120.00125 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00470 * 179.97438 * 24 23 22 40 40 H 1.09002 * 109.47062 * 184.18888 * 25 4 3 41 41 H 1.09002 * 109.46659 * 60.00311 * 26 25 4 42 42 H 1.08994 * 109.47315 * 180.02562 * 26 25 4 43 43 H 1.08996 * 109.47076 * 300.00699 * 26 25 4 44 44 H 1.09000 * 109.47264 * 60.00471 * 27 25 4 45 45 H 1.09004 * 109.47076 * 179.97438 * 27 25 4 46 46 H 1.08995 * 109.47593 * 299.99970 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1729 -0.7308 5 6 3.3580 2.3297 -0.0766 6 8 3.0630 2.4304 1.0987 7 7 3.9089 3.3748 -0.7251 8 6 4.2359 4.6011 0.0067 9 1 3.5386 4.7269 0.8349 10 6 5.6626 4.5051 0.5512 11 6 5.7306 3.4181 1.5927 12 1 4.8642 2.8039 1.7898 13 6 6.8987 3.2075 2.2942 14 7 6.9580 2.2592 3.2035 15 14 8.3973 4.2693 1.9530 16 1 8.3721 5.4606 2.8393 17 1 9.6303 3.4840 2.2144 18 1 8.3809 4.7074 0.5342 19 6 4.1313 5.7833 -0.9221 20 6 4.5897 5.6835 -2.2223 21 6 4.4896 6.7665 -3.0755 22 6 3.9396 7.9523 -2.6257 23 6 3.4859 8.0537 -1.3239 24 6 3.5818 6.9693 -0.4721 25 6 3.3723 1.0893 -2.1738 26 6 4.3450 -0.0554 -2.4647 27 6 2.0485 0.8294 -2.8953 28 1 -1.0501 -0.0002 0.0003 29 1 3.0098 -0.9061 -0.4833 30 1 3.0093 0.0357 1.0271 31 1 4.0891 3.3151 -1.6764 32 1 6.3475 4.2708 -0.2637 33 1 5.9447 5.4572 1.0007 34 1 7.7799 2.1109 3.6967 35 1 5.0225 4.7581 -2.5727 36 1 4.8437 6.6871 -4.0927 37 1 3.8639 8.7992 -3.2915 38 1 3.0565 8.9802 -0.9723 39 1 3.2277 7.0486 0.5452 40 1 3.8001 2.0279 -2.5263 41 1 3.9172 -0.9939 -2.1122 42 1 4.5227 -0.1173 -3.5382 43 1 5.2881 0.1298 -1.9506 44 1 1.3556 1.6450 -2.6883 45 1 2.2259 0.7677 -3.9691 46 1 1.6207 -0.1091 -2.5429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921581064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:18 Heat of formation + Delta-G solvation = 65.301729 kcal Electronic energy + Delta-G solvation = -26788.857249 eV Core-core repulsion = 23259.799365 eV Total energy + Delta-G solvation = -3529.057884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.10688 -38.98906 -36.67959 -35.04446 -33.31285 -32.43529 -31.39251 -30.89377 -30.60356 -29.18231 -27.26696 -26.77820 -24.74457 -22.55086 -21.80022 -21.67728 -20.31855 -19.17374 -18.51722 -17.66077 -16.75763 -16.41837 -15.81258 -15.16998 -14.90131 -14.76861 -14.27000 -14.18288 -13.91969 -13.74332 -13.52166 -13.21134 -13.17759 -12.84399 -12.64793 -12.58109 -12.26594 -12.18994 -11.95094 -11.71089 -11.32136 -11.26053 -11.11574 -11.00226 -10.79969 -10.40676 -10.34532 -10.24177 -9.86187 -9.65846 -9.40479 -9.06403 -8.75507 -8.50646 -8.39093 -8.29248 -7.99937 -5.84810 -3.82024 1.53948 1.56890 2.63790 3.07765 3.36487 3.44315 3.46452 3.50632 3.93153 3.98879 4.36971 4.57388 4.62377 4.80915 5.03153 5.05548 5.11473 5.12521 5.18875 5.30756 5.44707 5.47250 5.56404 5.67582 5.68275 5.73270 5.80332 5.86793 5.95988 6.04694 6.10500 6.15732 6.17242 6.28583 6.33021 6.52872 6.61626 6.64528 6.79384 6.85087 6.94946 7.15958 7.20515 7.35096 7.56016 7.83258 7.90328 8.54282 8.74651 9.24646 9.52789 9.76561 11.27444 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008385 B = 0.006142 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.427772 B = 4557.964608 C = 6620.396544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.180 4.180 3 C 0.237 3.763 4 N -0.624 5.624 5 C 0.717 3.283 6 O -0.558 6.558 7 N -0.728 5.728 8 C 0.208 3.792 9 H 0.096 0.904 10 C -0.016 4.016 11 C -0.520 4.520 12 H 0.111 0.889 13 C 0.068 3.932 14 N -0.902 5.902 15 Si 0.865 3.135 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.269 1.269 19 C -0.074 4.074 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.119 4.119 24 C -0.110 4.110 25 C 0.135 3.865 26 C -0.165 4.165 27 C -0.161 4.161 28 H 0.212 0.788 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.383 0.617 32 H 0.015 0.985 33 H 0.019 0.981 34 H 0.258 0.742 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 1.178 -16.201 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.182 4.182 3 C 0.114 3.886 4 N -0.362 5.362 5 C 0.419 3.581 6 O -0.433 6.433 7 N -0.385 5.385 8 C 0.103 3.897 9 H 0.114 0.886 10 C -0.054 4.054 11 C -0.558 4.558 12 H 0.129 0.871 13 C -0.132 4.132 14 N -0.542 5.542 15 Si 0.693 3.307 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.194 1.194 19 C -0.074 4.074 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.151 4.151 23 C -0.137 4.137 24 C -0.129 4.129 25 C 0.031 3.969 26 C -0.224 4.224 27 C -0.220 4.220 28 H 0.229 0.771 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.220 0.780 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.975 1.196 -15.164 17.661 hybrid contribution 0.984 0.582 -0.629 1.305 sum -7.991 1.778 -15.793 17.788 Atomic orbital electron populations 1.24776 0.95787 1.00618 1.02193 1.23856 0.95147 0.99978 0.99170 1.18108 0.82941 0.88024 0.99510 1.47126 1.70846 1.10793 1.07452 1.15615 0.78084 0.79758 0.84676 1.90923 1.56671 1.81592 1.14080 1.45172 1.67287 1.14760 1.11254 1.19861 1.00106 0.78384 0.91307 0.88624 1.20031 0.90539 0.97882 0.96929 1.21747 1.00733 1.15957 1.17352 0.87135 1.24996 0.98063 0.95069 0.95086 1.69921 1.27052 1.32342 1.24882 0.87025 0.83601 0.81042 0.79022 1.20529 1.21683 1.19434 1.20390 0.96334 0.96093 0.94631 1.20927 1.00173 0.98780 0.93674 1.21063 0.99925 0.93412 0.99405 1.21052 1.00243 0.97675 0.96099 1.21093 1.00216 0.98399 0.93985 1.21080 0.99110 0.92670 1.00017 1.21005 0.95467 0.99584 0.80847 1.22194 0.99997 0.98395 1.01766 1.22199 0.97352 1.02603 0.99813 0.77130 0.88562 0.87057 0.78024 0.96710 0.96260 0.93170 0.86479 0.86432 0.86586 0.86306 0.85711 0.89937 0.92075 0.91667 0.91314 0.92459 0.91902 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.89 19.25 29.55 0.57 -2.32 16 2 C -0.18 -2.73 12.02 -37.12 -0.45 -3.17 16 3 C 0.24 3.66 5.41 -6.83 -0.04 3.62 16 4 N -0.62 -10.11 2.37 -175.13 -0.42 -10.53 16 5 C 0.72 14.68 7.43 -86.92 -0.65 14.03 16 6 O -0.56 -14.12 13.05 5.29 0.07 -14.05 16 7 N -0.73 -13.45 4.84 -59.81 -0.29 -13.73 16 8 C 0.21 4.19 2.43 -69.08 -0.17 4.02 16 9 H 0.10 2.15 7.24 -51.93 -0.38 1.77 16 10 C -0.02 -0.37 3.69 -27.88 -0.10 -0.48 16 11 C -0.52 -15.06 9.17 -34.44 -0.32 -15.37 16 12 H 0.11 3.52 4.67 -52.48 -0.24 3.27 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 14 N -0.90 -28.64 13.96 55.43 0.77 -27.87 16 15 Si 0.87 22.19 27.38 -169.99 -4.65 17.54 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.27 -6.64 6.67 56.52 0.38 -6.26 16 19 C -0.07 -1.23 4.95 -104.62 -0.52 -1.74 16 20 C -0.12 -1.69 9.10 -39.59 -0.36 -2.05 16 21 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.13 -1.59 10.05 -39.58 -0.40 -1.98 16 23 C -0.12 -1.53 10.05 -39.59 -0.40 -1.92 16 24 C -0.11 -1.68 9.67 -39.58 -0.38 -2.06 16 25 C 0.14 1.64 3.25 -67.93 -0.22 1.42 16 26 C -0.17 -1.75 9.09 37.16 0.34 -1.41 16 27 C -0.16 -1.68 8.75 37.15 0.32 -1.35 16 28 H 0.21 2.05 7.80 -54.08 -0.42 1.63 16 29 H 0.10 1.17 6.22 -51.93 -0.32 0.85 16 30 H 0.11 2.03 7.50 -51.93 -0.39 1.64 16 31 H 0.38 5.85 4.29 -40.82 -0.18 5.67 16 32 H 0.01 0.35 7.51 -51.93 -0.39 -0.04 16 33 H 0.02 0.47 7.32 -51.93 -0.38 0.09 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.12 1.55 6.88 -52.48 -0.36 1.19 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.82 8.04 -52.48 -0.42 1.40 16 40 H 0.08 0.96 5.45 -51.93 -0.28 0.68 16 41 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.66 6.91 -51.93 -0.36 0.30 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -35.84 373.71 -8.72 -44.57 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.58 Total: 9.19 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -3.26 Total: -10.74 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.07 Total: -52.13 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.65 Total: 17.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.84 -8.72 -44.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921581064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.870 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds