Wall clock time and date at job start Tue Mar 31 2020 10:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47580 * 148.05396 * 3 2 1 5 5 C 1.34774 * 120.00055 * 89.99491 * 4 3 2 6 6 O 1.21588 * 119.99879 * 354.59765 * 5 4 3 7 7 N 1.34775 * 119.99816 * 174.59961 * 5 4 3 8 8 C 1.46505 * 119.99770 * 184.12908 * 7 5 4 9 9 H 1.08994 * 109.47134 * 329.61823 * 8 7 5 10 10 C 1.53004 * 109.47250 * 89.62054 * 8 7 5 11 11 C 1.50699 * 109.46954 * 293.86301 * 10 8 7 12 12 H 1.08006 * 120.00280 * 4.49213 * 11 10 8 13 13 C 1.37874 * 120.00303 * 184.49837 * 11 10 8 14 14 N 1.31509 * 120.00687 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99495 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47238 * 90.00454 * 15 13 11 17 17 H 1.48504 * 109.47121 * 210.00049 * 15 13 11 18 18 H 1.48495 * 109.47335 * 330.00451 * 15 13 11 19 19 C 1.50704 * 109.46746 * 209.61765 * 8 7 5 20 20 C 1.38228 * 120.00213 * 319.72449 * 19 8 7 21 21 C 1.38231 * 120.00047 * 179.78787 * 20 19 8 22 22 C 1.38239 * 119.99950 * 0.44577 * 21 20 19 23 23 C 1.38233 * 119.99812 * 359.80521 * 22 21 20 24 24 C 1.38229 * 120.00053 * 359.97438 * 23 22 21 25 25 C 1.46496 * 119.99679 * 270.27930 * 4 3 2 26 26 C 1.53006 * 109.47199 * 304.18331 * 25 4 3 27 27 C 1.52995 * 109.47494 * 64.18475 * 25 4 3 28 28 H 4.40647 * 5.51423 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47218 * 28.05190 * 3 2 1 30 30 H 1.09004 * 109.47107 * 268.05700 * 3 2 1 31 31 H 0.96997 * 120.00429 * 4.12358 * 7 5 4 32 32 H 1.08997 * 109.47192 * 53.85845 * 10 8 7 33 33 H 1.08998 * 109.46884 * 173.86022 * 10 8 7 34 34 H 0.96996 * 120.00412 * 179.97438 * 14 13 11 35 35 H 1.08006 * 119.99795 * 0.02562 * 20 19 8 36 36 H 1.08003 * 120.00374 * 180.27506 * 21 20 19 37 37 H 1.07995 * 119.99753 * 179.83665 * 22 21 20 38 38 H 1.08000 * 120.00125 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00470 * 179.97438 * 24 23 22 40 40 H 1.09002 * 109.47062 * 184.18888 * 25 4 3 41 41 H 1.09002 * 109.46659 * 60.00311 * 26 25 4 42 42 H 1.08994 * 109.47315 * 180.02562 * 26 25 4 43 43 H 1.08996 * 109.47076 * 300.00699 * 26 25 4 44 44 H 1.09000 * 109.47264 * 60.00471 * 27 25 4 45 45 H 1.09004 * 109.47076 * 179.97438 * 27 25 4 46 46 H 1.08995 * 109.47593 * 299.99970 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1729 -0.7308 5 6 3.3580 2.3297 -0.0766 6 8 3.0630 2.4304 1.0987 7 7 3.9089 3.3748 -0.7251 8 6 4.2359 4.6011 0.0067 9 1 3.5386 4.7269 0.8349 10 6 5.6626 4.5051 0.5512 11 6 5.7306 3.4181 1.5927 12 1 4.8642 2.8039 1.7898 13 6 6.8987 3.2075 2.2942 14 7 6.9580 2.2592 3.2035 15 14 8.3973 4.2693 1.9530 16 1 8.3721 5.4606 2.8393 17 1 9.6303 3.4840 2.2144 18 1 8.3809 4.7074 0.5342 19 6 4.1313 5.7833 -0.9221 20 6 4.5897 5.6835 -2.2223 21 6 4.4896 6.7665 -3.0755 22 6 3.9396 7.9523 -2.6257 23 6 3.4859 8.0537 -1.3239 24 6 3.5818 6.9693 -0.4721 25 6 3.3723 1.0893 -2.1738 26 6 4.3450 -0.0554 -2.4647 27 6 2.0485 0.8294 -2.8953 28 1 -1.0501 -0.0002 0.0003 29 1 3.0098 -0.9061 -0.4833 30 1 3.0093 0.0357 1.0271 31 1 4.0891 3.3151 -1.6764 32 1 6.3475 4.2708 -0.2637 33 1 5.9447 5.4572 1.0007 34 1 7.7799 2.1109 3.6967 35 1 5.0225 4.7581 -2.5727 36 1 4.8437 6.6871 -4.0927 37 1 3.8639 8.7992 -3.2915 38 1 3.0565 8.9802 -0.9723 39 1 3.2277 7.0486 0.5452 40 1 3.8001 2.0279 -2.5263 41 1 3.9172 -0.9939 -2.1122 42 1 4.5227 -0.1173 -3.5382 43 1 5.2881 0.1298 -1.9506 44 1 1.3556 1.6450 -2.6883 45 1 2.2259 0.7677 -3.9691 46 1 1.6207 -0.1091 -2.5429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921581064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:17 Heat of formation + Delta-G solvation = 43.084676 kcal Electronic energy + Delta-G solvation = -26789.820653 eV Core-core repulsion = 23259.799365 eV Total energy + Delta-G solvation = -3530.021288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55461 -40.13590 -38.00861 -36.61576 -34.78483 -34.27673 -32.78031 -32.06019 -31.68919 -30.91188 -28.32801 -27.94037 -26.38721 -23.65450 -23.44478 -22.88043 -21.70051 -20.64320 -19.84446 -18.81195 -18.74268 -17.70397 -17.14456 -16.63012 -16.31589 -16.06596 -15.90330 -15.46103 -15.15881 -15.04750 -15.01332 -14.40247 -14.20602 -14.12239 -14.03371 -14.00601 -13.82394 -13.49945 -13.09289 -12.97703 -12.94336 -12.55412 -12.39953 -12.24538 -12.05205 -11.98199 -11.86183 -11.62785 -11.48115 -11.18764 -11.03061 -10.89085 -10.69838 -9.94960 -9.78254 -9.66549 -9.47604 -8.14893 -6.17860 0.45205 0.53745 1.32662 1.33001 1.39329 1.44966 1.92339 2.16433 2.38738 2.43531 2.90941 3.07264 3.18653 3.54348 3.76411 3.86808 4.01335 4.15350 4.19016 4.21550 4.32633 4.33382 4.47643 4.61698 4.65431 4.74359 4.77374 4.79526 4.79902 4.95817 4.97250 5.03567 5.08692 5.10387 5.18622 5.26131 5.31010 5.39832 5.57495 5.62045 5.64188 5.65120 5.70761 5.88049 6.00704 6.15658 6.49689 6.70532 7.01823 7.15589 7.43998 7.79716 9.00644 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008385 B = 0.006142 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.427772 B = 4557.964608 C = 6620.396544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.225 4.225 3 C 0.237 3.763 4 N -0.620 5.620 5 C 0.706 3.294 6 O -0.619 6.619 7 N -0.717 5.717 8 C 0.220 3.780 9 H 0.057 0.943 10 C -0.008 4.008 11 C -0.526 4.526 12 H 0.072 0.928 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.939 3.061 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.248 1.248 19 C -0.098 4.098 20 C -0.124 4.124 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.130 4.130 25 C 0.127 3.873 26 C -0.160 4.160 27 C -0.151 4.151 28 H 0.248 0.752 29 H 0.128 0.872 30 H 0.068 0.932 31 H 0.400 0.600 32 H 0.022 0.978 33 H 0.018 0.982 34 H 0.259 0.741 35 H 0.126 0.874 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.094 0.906 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 2.945 -20.644 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.227 4.227 3 C 0.115 3.885 4 N -0.357 5.357 5 C 0.408 3.592 6 O -0.498 6.498 7 N -0.375 5.375 8 C 0.114 3.886 9 H 0.075 0.925 10 C -0.046 4.046 11 C -0.564 4.564 12 H 0.090 0.910 13 C -0.193 4.193 14 N -0.597 5.597 15 Si 0.763 3.237 16 H -0.199 1.199 17 H -0.213 1.213 18 H -0.171 1.171 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.149 4.149 25 C 0.024 3.976 26 C -0.218 4.218 27 C -0.209 4.209 28 H 0.264 0.736 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.240 0.760 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.143 0.857 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.113 0.887 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.927 2.952 -19.692 21.821 hybrid contribution 0.817 0.013 0.723 1.091 sum -8.110 2.965 -18.968 20.841 Atomic orbital electron populations 1.25646 0.96605 0.98538 0.99917 1.23926 0.95526 1.01955 1.01247 1.18055 0.83917 0.88908 0.97657 1.47213 1.69820 1.09387 1.09233 1.15989 0.77962 0.81038 0.84210 1.90871 1.59089 1.82892 1.16958 1.44996 1.66631 1.13947 1.11879 1.19412 0.96632 0.80743 0.91790 0.92456 1.19903 0.93427 0.95688 0.95613 1.22056 0.99534 1.16495 1.18318 0.90993 1.25932 1.01844 0.96612 0.94917 1.70109 1.28119 1.34780 1.26654 0.85838 0.78913 0.78932 0.79990 1.19907 1.21310 1.17128 1.20065 0.99613 0.94907 0.95276 1.21077 1.00123 1.00192 0.92849 1.21451 0.98786 0.92544 1.00479 1.21530 0.98097 0.98589 0.95911 1.21398 0.99668 0.98350 0.94190 1.21177 0.99950 0.93341 1.00407 1.21371 0.97289 1.00697 0.78226 1.22164 0.98181 0.97810 1.03615 1.22112 0.95525 1.01872 1.01367 0.73566 0.85436 0.91350 0.76031 0.95983 0.96390 0.93185 0.85656 0.83039 0.82992 0.83765 0.86704 0.89468 0.91358 0.88380 0.93717 0.93906 0.88694 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.94 19.25 74.32 1.43 -3.50 16 2 C -0.23 -7.02 12.02 31.12 0.37 -6.64 16 3 C 0.24 7.84 5.41 84.57 0.46 8.30 16 4 N -0.62 -21.08 2.37 -826.26 -1.96 -23.05 16 5 C 0.71 31.06 7.43 179.06 1.33 32.39 16 6 O -0.62 -34.51 13.05 -3.99 -0.05 -34.56 16 7 N -0.72 -27.68 4.84 -461.40 -2.23 -29.91 16 8 C 0.22 9.31 2.43 44.25 0.11 9.41 16 9 H 0.06 2.83 7.24 -2.39 -0.02 2.81 16 10 C -0.01 -0.39 3.69 29.85 0.11 -0.28 16 11 C -0.53 -32.19 9.17 25.60 0.23 -31.96 16 12 H 0.07 4.97 4.67 -2.91 -0.01 4.96 16 13 C 0.00 0.12 5.47 84.65 0.46 0.59 16 14 N -0.95 -63.80 13.96 21.45 0.30 -63.50 16 15 Si 0.94 46.77 27.38 68.60 1.88 48.65 16 16 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 18 H -0.25 -11.35 6.67 99.48 0.66 -10.69 16 19 C -0.10 -3.24 4.95 -19.87 -0.10 -3.34 16 20 C -0.12 -3.30 9.10 22.27 0.20 -3.10 16 21 C -0.11 -2.35 10.05 22.27 0.22 -2.13 16 22 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 23 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 24 C -0.13 -3.92 9.67 22.27 0.22 -3.71 16 25 C 0.13 2.97 3.25 44.99 0.15 3.11 16 26 C -0.16 -3.13 9.09 71.98 0.65 -2.48 16 27 C -0.15 -2.82 8.75 71.98 0.63 -2.19 16 28 H 0.25 4.18 7.80 -4.41 -0.03 4.15 16 29 H 0.13 3.22 6.22 -2.39 -0.01 3.21 16 30 H 0.07 2.82 7.50 -2.38 -0.02 2.80 16 31 H 0.40 12.26 4.29 -92.71 -0.40 11.86 16 32 H 0.02 1.05 7.51 -2.39 -0.02 1.03 16 33 H 0.02 0.88 7.32 -2.39 -0.02 0.87 16 34 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 35 H 0.13 3.01 6.88 -2.91 -0.02 2.99 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.11 3.54 8.04 -2.91 -0.02 3.51 16 40 H 0.09 1.92 5.45 -2.39 -0.01 1.91 16 41 H 0.07 1.24 6.54 -2.39 -0.02 1.22 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 1.17 6.91 -2.39 -0.02 1.15 16 Total: -1.00 -85.73 373.71 5.40 -80.33 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.54 Total: 32.19 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 6.93 Total: -10.16 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -3.89 Total: -116.45 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.05 Total: -34.56 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.88 Total: 48.65 kcal Total: -85.73 5.40 -80.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921581064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.416 kcal (2) G-P(sol) polarization free energy of solvation -85.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds