Wall clock time and date at job start Tue Mar 31 2020 12:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.54934 * 2 1 4 4 C 1.53077 * 117.51217 * 214.27826 * 2 1 3 5 5 C 1.52999 * 117.49647 * 145.67177 * 2 1 3 6 6 H 1.08993 * 117.49882 * 359.97438 * 5 2 1 7 7 C 1.53005 * 117.49654 * 215.00233 * 5 2 1 8 8 H 1.09006 * 115.55829 * 274.39924 * 7 5 2 9 9 C 1.52992 * 117.49869 * 128.70987 * 7 5 2 10 10 C 1.53004 * 117.49875 * 60.08465 * 7 5 2 11 11 H 1.08995 * 117.51544 * 0.02562 * 10 7 5 12 12 N 1.46499 * 117.49699 * 214.97893 * 10 7 5 13 13 C 1.34775 * 119.99597 * 154.98721 * 12 10 7 14 14 O 1.21584 * 120.00149 * 0.02562 * 13 12 10 15 15 N 1.34786 * 119.99794 * 179.97438 * 13 12 10 16 16 C 1.39942 * 119.99714 * 175.10611 * 15 13 12 17 17 C 1.38867 * 120.06596 * 214.80299 * 16 15 13 18 18 C 1.38117 * 119.92914 * 179.78952 * 17 16 15 19 19 C 1.38286 * 120.06680 * 0.46844 * 18 17 16 20 20 C 1.50697 * 119.92862 * 179.76502 * 19 18 17 21 21 C 1.50709 * 109.47034 * 270.02371 * 20 19 18 22 22 H 1.07997 * 120.00200 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99692 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00547 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99882 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47247 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46921 * 119.99674 * 25 23 21 28 28 H 1.48497 * 109.47397 * 240.00133 * 25 23 21 29 29 C 1.38284 * 120.14093 * 359.78937 * 19 18 17 30 30 C 1.38117 * 120.06978 * 359.97438 * 29 19 18 31 31 H 1.08994 * 109.46869 * 274.33020 * 1 2 3 32 32 H 1.09001 * 109.47074 * 34.32895 * 1 2 3 33 33 H 1.08996 * 109.47006 * 154.32874 * 1 2 3 34 34 H 1.09001 * 117.50839 * 145.04293 * 4 2 1 35 35 H 1.08993 * 117.49228 * 0.02562 * 4 2 1 36 36 H 1.08998 * 117.49982 * 145.02583 * 9 7 5 37 37 H 1.09003 * 117.50389 * 359.97438 * 9 7 5 38 38 H 0.96994 * 120.00116 * 334.99196 * 12 10 7 39 39 H 0.96998 * 119.99927 * 355.37864 * 15 13 12 40 40 H 1.07997 * 120.03852 * 0.02562 * 17 16 15 41 41 H 1.07994 * 119.96897 * 180.23129 * 18 17 16 42 42 H 1.09001 * 109.47120 * 30.02151 * 20 19 18 43 43 H 1.08999 * 109.47543 * 150.02806 * 20 19 18 44 44 H 0.96999 * 120.00390 * 179.97438 * 24 23 21 45 45 H 1.08000 * 119.96063 * 179.97438 * 29 19 18 46 46 H 1.07994 * 120.03140 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2372 -1.1219 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8578 1.2692 7 6 3.5487 -0.7753 1.4722 8 1 4.4454 -0.8365 0.8553 9 6 3.6787 -1.1589 2.9475 10 6 3.5060 0.3088 2.5510 11 1 2.5431 0.7758 2.7577 12 7 4.6733 1.1851 2.6760 13 6 4.5372 2.4176 3.2039 14 8 3.4456 2.8021 3.5768 15 7 5.6112 3.2237 3.3193 16 6 5.4538 4.5387 3.7715 17 6 6.2583 5.5501 3.2634 18 6 6.0975 6.8477 3.7085 19 6 5.1432 7.1384 4.6661 20 6 4.9740 8.5544 5.1533 21 6 5.8733 8.7882 6.3398 22 1 6.5039 7.9910 6.7049 23 6 5.8902 10.0194 6.9600 24 7 5.1219 10.9901 6.5159 25 14 7.0043 10.3091 8.4312 26 1 7.7624 9.0676 8.7301 27 1 7.9555 11.4071 8.1231 28 1 6.1814 10.6829 9.6094 29 6 4.3441 6.1326 5.1778 30 6 4.4966 4.8338 4.7333 31 1 -0.3633 0.0776 1.0247 32 1 -0.3633 0.8487 -0.5796 33 1 -0.3633 -0.9262 -0.4452 34 1 3.1725 -0.8764 -1.2677 35 1 1.6121 -1.8594 -1.2679 36 1 4.6608 -1.4723 3.3015 37 1 2.8291 -1.6569 3.4149 38 1 5.5441 0.8782 2.3787 39 1 6.4928 2.8936 3.0853 40 1 7.0064 5.3230 2.5183 41 1 6.7203 7.6354 3.3111 42 1 5.2386 9.2475 4.3547 43 1 3.9367 8.7164 5.4462 44 1 5.1335 11.8562 6.9524 45 1 3.5999 6.3628 5.9259 46 1 3.8725 4.0487 5.1337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932560683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:11 Heat of formation + Delta-G solvation = 17.634795 kcal Electronic energy + Delta-G solvation = -24464.047904 eV Core-core repulsion = 20932.923027 eV Total energy + Delta-G solvation = -3531.124877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70083 -40.13062 -39.35604 -37.16296 -36.19088 -35.03031 -33.83616 -31.92259 -31.73074 -29.44368 -28.36138 -25.39835 -24.40665 -23.87217 -23.37951 -22.21225 -21.83131 -21.59454 -20.86234 -19.52093 -18.55995 -18.46559 -17.14720 -16.81017 -16.56695 -16.32746 -15.90639 -15.83715 -15.35715 -15.14735 -14.61531 -14.51061 -14.28798 -14.24697 -13.98172 -13.67333 -13.51363 -13.30060 -13.17205 -12.91895 -12.66007 -12.62740 -12.45349 -12.28856 -12.15963 -12.05452 -11.69113 -11.63031 -11.53678 -11.24306 -11.03824 -10.88834 -10.60053 -10.47865 -9.74353 -9.68909 -8.82540 -8.17267 -6.32067 0.49699 0.59616 1.40014 1.40629 1.46430 1.54333 1.97426 2.40843 2.66143 3.01344 3.03035 3.11649 3.16549 3.66817 3.75705 3.94369 4.03290 4.07049 4.18334 4.19210 4.35118 4.40413 4.41217 4.52341 4.59967 4.68150 4.70853 4.81555 4.90326 4.93071 4.94402 4.96262 5.15395 5.18228 5.24779 5.30526 5.31858 5.34591 5.43344 5.43784 5.50696 5.51886 5.64449 5.77195 5.95748 6.10460 6.14377 6.27767 6.80921 6.97209 7.36280 7.46620 8.90777 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.002074 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.541017 B =13500.332290 C =13844.385077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.165 4.165 3 H 0.086 0.914 4 C -0.160 4.160 5 C -0.123 4.123 6 H 0.114 0.886 7 C -0.114 4.114 8 H 0.123 0.877 9 C -0.170 4.170 10 C 0.083 3.917 11 H 0.111 0.889 12 N -0.696 5.696 13 C 0.701 3.299 14 O -0.616 6.616 15 N -0.666 5.666 16 C 0.136 3.864 17 C -0.127 4.127 18 C -0.113 4.113 19 C -0.076 4.076 20 C 0.057 3.943 21 C -0.525 4.525 22 H 0.056 0.944 23 C 0.001 3.999 24 N -0.931 5.931 25 Si 0.967 3.033 26 H -0.264 1.264 27 H -0.274 1.274 28 H -0.278 1.278 29 C -0.122 4.122 30 C -0.124 4.124 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.415 0.585 39 H 0.424 0.576 40 H 0.160 0.840 41 H 0.127 0.873 42 H 0.007 0.993 43 H -0.002 1.002 44 H 0.265 0.735 45 H 0.108 0.892 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -29.610 -14.442 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.184 4.184 3 H 0.104 0.896 4 C -0.197 4.197 5 C -0.142 4.142 6 H 0.132 0.868 7 C -0.134 4.134 8 H 0.140 0.860 9 C -0.208 4.208 10 C -0.023 4.023 11 H 0.128 0.872 12 N -0.350 5.350 13 C 0.402 3.598 14 O -0.495 6.495 15 N -0.315 5.315 16 C 0.042 3.958 17 C -0.147 4.147 18 C -0.132 4.132 19 C -0.077 4.077 20 C 0.020 3.980 21 C -0.563 4.563 22 H 0.074 0.926 23 C -0.197 4.197 24 N -0.572 5.572 25 Si 0.792 3.208 26 H -0.188 1.188 27 H -0.200 1.200 28 H -0.204 1.204 29 C -0.140 4.140 30 C -0.144 4.144 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.253 0.747 39 H 0.263 0.737 40 H 0.178 0.822 41 H 0.145 0.855 42 H 0.026 0.974 43 H 0.016 0.984 44 H 0.074 0.926 45 H 0.126 0.874 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.798 -29.154 -14.115 32.401 hybrid contribution 0.838 0.652 0.709 1.276 sum 0.039 -28.502 -13.406 31.498 Atomic orbital electron populations 1.21363 0.92499 1.02372 1.01776 1.22398 0.95640 0.94438 1.05882 0.89603 1.23228 1.02683 1.00653 0.93119 1.21917 0.96805 1.01466 0.93987 0.86810 1.22341 0.98470 1.01114 0.91445 0.85958 1.23683 1.04806 0.95913 0.96428 1.21513 0.89603 0.86114 1.05072 0.87158 1.44232 1.12172 1.12871 1.65691 1.16050 0.83862 0.81276 0.78647 1.90927 1.27111 1.75324 1.56135 1.42194 1.10170 1.10142 1.69009 1.17343 0.98968 0.83757 0.95770 1.21008 1.01817 0.90621 1.01286 1.20970 0.97961 0.96900 0.97349 1.20408 0.95278 0.96571 0.95427 1.18095 0.95785 0.88791 0.95341 1.21419 1.23685 0.97363 1.13842 0.92597 1.25965 0.97363 0.95761 1.00580 1.70093 1.40615 1.03789 1.42655 0.85360 0.78522 0.78402 0.78542 1.18823 1.19989 1.20394 1.20928 1.00122 0.92639 1.00352 1.21140 0.99867 0.96369 0.97030 0.92680 0.92397 0.91415 0.88356 0.87662 0.86842 0.87400 0.74717 0.73696 0.82240 0.85463 0.97441 0.98355 0.92604 0.87373 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 10.19 71.98 0.73 -0.92 16 2 C -0.17 -2.39 6.06 -10.77 -0.07 -2.45 16 3 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.16 -1.67 9.90 30.62 0.30 -1.37 16 5 C -0.12 -1.43 5.59 -10.79 -0.06 -1.49 16 6 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 7 C -0.11 -1.24 5.79 -10.79 -0.06 -1.31 16 8 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 9 C -0.17 -1.81 10.18 30.59 0.31 -1.50 16 10 C 0.08 1.38 6.08 44.99 0.27 1.65 16 11 H 0.11 2.56 7.40 -2.39 -0.02 2.54 16 12 N -0.70 -11.35 5.57 -457.81 -2.55 -13.90 16 13 C 0.70 18.04 8.41 179.05 1.51 19.55 16 14 O -0.62 -22.18 13.33 -3.98 -0.05 -22.23 16 15 N -0.67 -15.19 5.34 -317.17 -1.70 -16.88 16 16 C 0.14 4.32 6.30 38.15 0.24 4.57 16 17 C -0.13 -3.86 9.97 22.39 0.22 -3.63 16 18 C -0.11 -4.37 9.69 22.25 0.22 -4.16 16 19 C -0.08 -3.53 5.07 -19.84 -0.10 -3.63 16 20 C 0.06 3.15 5.10 29.10 0.15 3.30 16 21 C -0.53 -30.68 9.09 25.60 0.23 -30.45 16 22 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 23 C 0.00 0.06 5.46 84.65 0.46 0.53 16 24 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 25 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 29 C -0.12 -5.33 9.69 22.25 0.22 -5.12 16 30 C -0.12 -4.77 8.70 22.39 0.19 -4.58 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.71 7.90 -2.39 -0.02 0.69 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.88 8.05 -2.39 -0.02 0.86 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.42 3.55 8.85 -92.71 -0.82 2.73 16 39 H 0.42 5.73 8.84 -92.71 -0.82 4.91 16 40 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 41 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 43 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 44 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 45 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 46 H 0.13 4.96 6.21 -2.91 -0.02 4.94 16 Total: -1.00 -75.21 388.42 2.13 -73.07 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.65 Total: 20.85 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 4.77 Total: -31.01 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -3.96 Total: -87.71 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.21 2.13 -73.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.706 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds