Wall clock time and date at job start Tue Mar 31 2020 12:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32683 * 1 3 3 C 1.47666 * 119.99748 * 2 1 4 4 C 1.39715 * 119.99323 * 180.02562 * 3 2 1 5 5 C 1.37603 * 120.00149 * 179.97438 * 4 3 2 6 6 C 1.39740 * 119.99874 * 359.97438 * 5 4 3 7 7 C 1.47684 * 120.00595 * 180.02562 * 6 5 4 8 8 O 1.21571 * 120.00006 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99798 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99774 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.52359 * 324.92420 * 10 9 7 12 12 C 1.53196 * 109.49406 * 85.00032 * 10 9 7 13 13 N 1.46929 * 108.77500 * 65.31681 * 12 10 9 14 14 C 1.36930 * 120.63078 * 233.58504 * 13 12 10 15 15 H 1.07996 * 120.00049 * 151.85197 * 14 13 12 16 16 C 1.38816 * 120.00324 * 331.84993 * 14 13 12 17 17 N 1.31624 * 119.99356 * 343.06571 * 16 14 13 18 18 Si 1.86793 * 120.00395 * 163.06593 * 16 14 13 19 19 H 1.48500 * 109.46960 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47338 * 119.99948 * 18 16 14 21 21 H 1.48503 * 109.47085 * 239.99957 * 18 16 14 22 22 C 1.46924 * 118.73622 * 53.60730 * 13 12 10 23 23 C 1.53194 * 108.89447 * 306.31812 * 22 13 12 24 24 C 1.53032 * 109.49740 * 204.83791 * 10 9 7 25 25 H 1.09007 * 109.46047 * 181.39518 * 24 10 9 26 26 C 1.53004 * 109.46337 * 61.42382 * 24 10 9 27 27 C 1.39750 * 119.99053 * 0.27526 * 6 5 4 28 28 C 1.37607 * 119.99194 * 359.46715 * 27 6 5 29 29 H 1.08003 * 120.00307 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.00007 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00168 * 179.97438 * 2 1 3 32 32 H 1.08001 * 119.99917 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.99838 * 179.97438 * 5 4 3 34 34 H 0.96994 * 119.99967 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.58565 * 305.52953 * 12 10 9 36 36 H 1.09002 * 109.58482 * 185.10189 * 12 10 9 37 37 H 0.96997 * 119.99488 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.59145 * 66.17901 * 22 13 12 39 39 H 1.09001 * 109.58665 * 186.46252 * 22 13 12 40 40 H 1.08999 * 109.49595 * 174.66017 * 23 22 13 41 41 H 1.08997 * 109.49661 * 294.75715 * 23 22 13 42 42 H 1.08998 * 109.46923 * 59.99686 * 26 24 10 43 43 H 1.08997 * 109.47687 * 180.02562 * 26 24 10 44 44 H 1.09001 * 109.46906 * 299.99921 * 26 24 10 45 45 H 1.07997 * 120.00129 * 179.70743 * 27 6 5 46 46 H 1.08004 * 119.99300 * 180.25797 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4623 1.2788 -0.0005 5 6 4.1504 2.4704 -0.0011 6 6 3.4518 3.6806 -0.0016 7 6 4.1902 4.9596 -0.0028 8 8 5.4059 4.9596 -0.0028 9 7 3.5162 6.1268 -0.0038 10 6 4.2487 7.3956 -0.0044 11 1 5.1587 7.2911 0.5864 12 6 4.6139 7.7744 -1.4431 13 7 3.3770 8.0380 -2.1912 14 6 3.1233 7.3899 -3.3704 15 1 2.1042 7.2141 -3.6815 16 6 4.1760 6.9590 -4.1661 17 7 5.3844 7.4464 -3.9794 18 14 3.8778 5.6876 -5.5017 19 1 2.4438 5.3018 -5.5065 20 1 4.2408 6.2621 -6.8220 21 1 4.7119 4.4876 -5.2378 22 6 2.4179 9.0106 -1.6500 23 6 2.0740 8.6193 -0.2093 24 6 3.3701 8.4928 0.6005 25 1 3.9064 9.4416 0.5771 26 6 3.0316 8.1343 2.0489 27 6 2.0543 3.6805 0.0042 28 6 1.3665 2.4887 -0.0006 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8668 -0.9353 0.0004 32 1 4.0022 0.3434 -0.0005 33 1 5.2304 2.4702 -0.0011 34 1 2.5463 6.1267 -0.0034 35 1 5.1558 6.9525 -1.9111 36 1 5.2360 8.6695 -1.4386 37 1 6.1199 7.1456 -4.5356 38 1 2.8609 10.0064 -1.6623 39 1 1.5118 9.0062 -2.2559 40 1 1.4375 9.3853 0.2336 41 1 1.5495 7.6638 -0.2072 42 1 3.9520 8.0463 2.6260 43 1 2.4054 8.9155 2.4798 44 1 2.4957 7.1854 2.0726 45 1 1.5142 4.6157 0.0086 46 1 0.2865 2.4886 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968341298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:00 Heat of formation + Delta-G solvation = 26.142193 kcal Electronic energy + Delta-G solvation = -26891.163653 eV Core-core repulsion = 23360.407684 eV Total energy + Delta-G solvation = -3530.755969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.03733 -38.77386 -37.31631 -34.22405 -34.12251 -32.85898 -31.14330 -30.90133 -29.87838 -28.75812 -27.27524 -24.43763 -23.86374 -22.64365 -22.19744 -21.07950 -20.79288 -19.63503 -18.67651 -17.84326 -16.76499 -16.20508 -15.34211 -14.99492 -14.84088 -14.71495 -14.30504 -13.99703 -13.83543 -13.69108 -13.35667 -13.31589 -13.19042 -13.02834 -12.64429 -12.55624 -12.26040 -11.92263 -11.57859 -11.40359 -11.35326 -11.08232 -10.92345 -10.87236 -10.71586 -10.50540 -10.40729 -10.18846 -9.91489 -9.68157 -9.50176 -9.33695 -8.98225 -8.43869 -8.41888 -8.18362 -6.62309 -5.74509 -3.17651 0.61628 1.43339 2.23005 3.37935 3.40239 3.47656 3.49191 3.73971 4.15848 4.52670 4.58766 4.67184 4.89559 5.07746 5.13377 5.22288 5.23981 5.35108 5.36404 5.40918 5.44965 5.56946 5.60311 5.80084 5.88047 5.93089 5.98987 6.02227 6.15044 6.16057 6.19868 6.29855 6.37119 6.42019 6.43317 6.48323 6.57705 6.64298 6.67038 6.75407 6.87764 6.91708 7.01904 7.40099 7.70158 7.83505 8.12808 8.49278 8.81026 9.24077 9.88256 10.43865 11.33402 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.005234 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.461673 B = 5347.931755 C = 6655.985698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.117 4.117 3 C -0.048 4.048 4 C -0.118 4.118 5 C -0.062 4.062 6 C -0.118 4.118 7 C 0.554 3.446 8 O -0.544 6.544 9 N -0.691 5.691 10 C 0.126 3.874 11 H 0.077 0.923 12 C 0.160 3.840 13 N -0.587 5.587 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.897 5.897 18 Si 0.895 3.105 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.142 3.858 23 C -0.129 4.129 24 C -0.094 4.094 25 H 0.078 0.922 26 C -0.144 4.144 27 C -0.082 4.082 28 C -0.122 4.122 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.394 0.606 35 H 0.097 0.903 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.018 0.982 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.127 0.873 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -8.465 12.131 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 C -0.048 4.048 4 C -0.136 4.136 5 C -0.081 4.081 6 C -0.121 4.121 7 C 0.340 3.660 8 O -0.423 6.423 9 N -0.342 5.342 10 C 0.020 3.980 11 H 0.095 0.905 12 C 0.034 3.966 13 N -0.310 5.310 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.541 5.541 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.015 3.985 23 C -0.168 4.168 24 C -0.113 4.113 25 H 0.096 0.904 26 C -0.202 4.202 27 C -0.101 4.101 28 C -0.140 4.140 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.230 0.770 35 H 0.115 0.885 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.144 0.856 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.138 -8.446 12.014 16.790 hybrid contribution -0.559 -0.642 -0.880 1.224 sum -8.697 -9.089 11.135 16.799 Atomic orbital electron populations 1.24421 0.95695 1.02307 0.99191 1.21833 0.95233 0.95771 1.00640 1.19246 0.93408 0.93132 0.98998 1.21196 0.93132 0.98076 1.01198 1.21221 1.00921 0.90786 0.95191 1.20206 0.93665 0.94275 1.03988 1.18078 0.87267 0.83713 0.76912 1.90746 1.13374 1.87551 1.50591 1.45744 1.09914 1.05327 1.73185 1.21813 0.93951 0.81588 1.00665 0.90547 1.21205 0.88391 1.00375 0.86665 1.43978 1.19510 1.44932 1.22547 1.19100 0.92041 1.30598 0.96548 0.91889 1.24999 0.96275 1.00252 0.97594 1.70007 1.00199 1.42888 1.40979 0.86345 0.77658 0.81844 0.81684 1.20309 1.21717 1.21527 1.20927 0.93837 0.92209 0.91481 1.22136 0.95992 1.00440 0.98247 1.21373 0.97221 0.98797 0.93942 0.90368 1.21851 1.01026 1.00893 0.96406 1.21239 0.93195 0.98346 0.97302 1.21172 0.99903 0.91521 1.01394 0.87899 0.87799 0.86362 0.85425 0.84546 0.77031 0.88484 0.95669 0.93662 0.96432 0.92861 0.92700 0.92897 0.93065 0.93132 0.93110 0.85552 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 14.15 28.84 0.41 -1.07 16 2 C -0.12 -1.12 9.90 -37.62 -0.37 -1.50 16 3 C -0.05 -0.58 5.87 -104.95 -0.62 -1.19 16 4 C -0.12 -1.50 9.76 -39.26 -0.38 -1.88 16 5 C -0.06 -0.96 9.57 -39.25 -0.38 -1.33 16 6 C -0.12 -1.97 5.88 -104.91 -0.62 -2.59 16 7 C 0.55 10.91 7.73 -12.40 -0.10 10.82 16 8 O -0.54 -12.58 16.00 5.30 0.08 -12.49 16 9 N -0.69 -12.55 4.20 -54.68 -0.23 -12.78 16 10 C 0.13 2.40 2.24 -67.81 -0.15 2.25 16 11 H 0.08 1.52 7.58 -51.93 -0.39 1.12 16 12 C 0.16 3.86 4.90 -3.71 -0.02 3.84 16 13 N -0.59 -14.21 2.91 -172.32 -0.50 -14.72 16 14 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 15 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 16 C 0.01 0.23 4.92 -17.43 -0.09 0.14 16 17 N -0.90 -26.73 11.20 55.49 0.62 -26.11 16 18 Si 0.89 22.43 29.59 -169.99 -5.03 17.40 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 C 0.14 2.81 6.50 -3.71 -0.02 2.79 16 23 C -0.13 -2.01 5.22 -26.45 -0.14 -2.15 16 24 C -0.09 -1.47 2.48 -90.42 -0.22 -1.69 16 25 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 26 C -0.14 -1.85 9.05 37.16 0.34 -1.52 16 27 C -0.08 -1.15 9.52 -39.25 -0.37 -1.53 16 28 C -0.12 -1.50 9.38 -39.27 -0.37 -1.87 16 29 H 0.10 0.80 6.02 -52.48 -0.32 0.49 16 30 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.14 2.12 7.64 -52.48 -0.40 1.72 16 34 H 0.39 6.37 4.65 -40.82 -0.19 6.18 16 35 H 0.10 2.77 6.06 -51.93 -0.31 2.46 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.81 6.41 -51.93 -0.33 0.48 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 45 H 0.13 1.58 6.38 -52.49 -0.34 1.24 16 46 H 0.13 1.25 6.15 -52.48 -0.32 0.93 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -32.32 367.48 -9.52 -41.85 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.76 Total: 6.81 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.24 Total: -5.49 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.11 Total: -53.61 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.32 -9.52 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968341298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.989 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds