Wall clock time and date at job start Tue Mar 31 2020 12:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32683 * 1 3 3 C 1.47666 * 119.99748 * 2 1 4 4 C 1.39715 * 119.99323 * 180.02562 * 3 2 1 5 5 C 1.37603 * 120.00149 * 179.97438 * 4 3 2 6 6 C 1.39740 * 119.99874 * 359.97438 * 5 4 3 7 7 C 1.47684 * 120.00595 * 180.02562 * 6 5 4 8 8 O 1.21571 * 120.00006 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99798 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99774 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.52359 * 324.92420 * 10 9 7 12 12 C 1.53196 * 109.49406 * 85.00032 * 10 9 7 13 13 N 1.46929 * 108.77500 * 65.31681 * 12 10 9 14 14 C 1.36930 * 120.63078 * 233.58504 * 13 12 10 15 15 H 1.07996 * 120.00049 * 151.85197 * 14 13 12 16 16 C 1.38816 * 120.00324 * 331.84993 * 14 13 12 17 17 N 1.31624 * 119.99356 * 343.06571 * 16 14 13 18 18 Si 1.86793 * 120.00395 * 163.06593 * 16 14 13 19 19 H 1.48500 * 109.46960 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47338 * 119.99948 * 18 16 14 21 21 H 1.48503 * 109.47085 * 239.99957 * 18 16 14 22 22 C 1.46924 * 118.73622 * 53.60730 * 13 12 10 23 23 C 1.53194 * 108.89447 * 306.31812 * 22 13 12 24 24 C 1.53032 * 109.49740 * 204.83791 * 10 9 7 25 25 H 1.09007 * 109.46047 * 181.39518 * 24 10 9 26 26 C 1.53004 * 109.46337 * 61.42382 * 24 10 9 27 27 C 1.39750 * 119.99053 * 0.27526 * 6 5 4 28 28 C 1.37607 * 119.99194 * 359.46715 * 27 6 5 29 29 H 1.08003 * 120.00307 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.00007 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00168 * 179.97438 * 2 1 3 32 32 H 1.08001 * 119.99917 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.99838 * 179.97438 * 5 4 3 34 34 H 0.96994 * 119.99967 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.58565 * 305.52953 * 12 10 9 36 36 H 1.09002 * 109.58482 * 185.10189 * 12 10 9 37 37 H 0.96997 * 119.99488 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.59145 * 66.17901 * 22 13 12 39 39 H 1.09001 * 109.58665 * 186.46252 * 22 13 12 40 40 H 1.08999 * 109.49595 * 174.66017 * 23 22 13 41 41 H 1.08997 * 109.49661 * 294.75715 * 23 22 13 42 42 H 1.08998 * 109.46923 * 59.99686 * 26 24 10 43 43 H 1.08997 * 109.47687 * 180.02562 * 26 24 10 44 44 H 1.09001 * 109.46906 * 299.99921 * 26 24 10 45 45 H 1.07997 * 120.00129 * 179.70743 * 27 6 5 46 46 H 1.08004 * 119.99300 * 180.25797 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4623 1.2788 -0.0005 5 6 4.1504 2.4704 -0.0011 6 6 3.4518 3.6806 -0.0016 7 6 4.1902 4.9596 -0.0028 8 8 5.4059 4.9596 -0.0028 9 7 3.5162 6.1268 -0.0038 10 6 4.2487 7.3956 -0.0044 11 1 5.1587 7.2911 0.5864 12 6 4.6139 7.7744 -1.4431 13 7 3.3770 8.0380 -2.1912 14 6 3.1233 7.3899 -3.3704 15 1 2.1042 7.2141 -3.6815 16 6 4.1760 6.9590 -4.1661 17 7 5.3844 7.4464 -3.9794 18 14 3.8778 5.6876 -5.5017 19 1 2.4438 5.3018 -5.5065 20 1 4.2408 6.2621 -6.8220 21 1 4.7119 4.4876 -5.2378 22 6 2.4179 9.0106 -1.6500 23 6 2.0740 8.6193 -0.2093 24 6 3.3701 8.4928 0.6005 25 1 3.9064 9.4416 0.5771 26 6 3.0316 8.1343 2.0489 27 6 2.0543 3.6805 0.0042 28 6 1.3665 2.4887 -0.0006 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8668 -0.9353 0.0004 32 1 4.0022 0.3434 -0.0005 33 1 5.2304 2.4702 -0.0011 34 1 2.5463 6.1267 -0.0034 35 1 5.1558 6.9525 -1.9111 36 1 5.2360 8.6695 -1.4386 37 1 6.1199 7.1456 -4.5356 38 1 2.8609 10.0064 -1.6623 39 1 1.5118 9.0062 -2.2559 40 1 1.4375 9.3853 0.2336 41 1 1.5495 7.6638 -0.2072 42 1 3.9520 8.0463 2.6260 43 1 2.4054 8.9155 2.4798 44 1 2.4957 7.1854 2.0726 45 1 1.5142 4.6157 0.0086 46 1 0.2865 2.4886 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968341298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:59 Heat of formation + Delta-G solvation = 7.491137 kcal Electronic energy + Delta-G solvation = -26891.972424 eV Core-core repulsion = 23360.407684 eV Total energy + Delta-G solvation = -3531.564739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42600 -40.01552 -38.82196 -35.95503 -35.14125 -34.35604 -32.86542 -32.11729 -31.14172 -30.06979 -28.89605 -26.00414 -25.24472 -23.76790 -23.62902 -22.74766 -22.00907 -20.56323 -20.31324 -19.10610 -18.65461 -17.30622 -16.95161 -16.56115 -16.10287 -15.97177 -15.78503 -15.62710 -15.27149 -14.98527 -14.78288 -14.68251 -14.38504 -14.13282 -14.09678 -13.76800 -13.56622 -13.23957 -13.11103 -12.99584 -12.76524 -12.64123 -12.49616 -12.24193 -12.21254 -11.94867 -11.80511 -11.57446 -11.32383 -11.30574 -11.07326 -10.92924 -10.56014 -10.02397 -9.99026 -9.18431 -8.65136 -7.87556 -5.32312 -0.41219 0.39855 1.33115 1.37020 1.40972 1.48750 2.11448 2.34269 2.46988 2.98722 3.28865 3.65990 3.69404 3.75906 3.86704 3.94689 3.95738 3.98385 4.12544 4.34289 4.34757 4.46790 4.51189 4.66180 4.71041 4.72529 4.82297 4.90080 4.94945 4.95629 5.02064 5.08723 5.16563 5.23454 5.23877 5.26208 5.34169 5.38432 5.46014 5.50904 5.59637 5.65960 5.70700 5.71888 5.82582 5.93052 6.38332 6.65964 7.13378 7.32709 7.86912 8.37701 9.17554 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.005234 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.461673 B = 5347.931755 C = 6655.985698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.143 4.143 3 C -0.037 4.037 4 C -0.122 4.122 5 C -0.079 4.079 6 C -0.154 4.154 7 C 0.546 3.454 8 O -0.594 6.594 9 N -0.681 5.681 10 C 0.136 3.864 11 H 0.062 0.938 12 C 0.171 3.829 13 N -0.600 5.600 14 C -0.247 4.247 15 H 0.071 0.929 16 C -0.051 4.051 17 N -0.934 5.934 18 Si 0.950 3.050 19 H -0.258 1.258 20 H -0.290 1.290 21 H -0.304 1.304 22 C 0.135 3.865 23 C -0.116 4.116 24 C -0.087 4.087 25 H 0.077 0.923 26 C -0.135 4.135 27 C -0.080 4.080 28 C -0.125 4.125 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.405 0.595 35 H 0.046 0.954 36 H -0.003 1.003 37 H 0.244 0.756 38 H 0.013 0.987 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.141 0.859 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 -9.825 13.582 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C -0.038 4.038 4 C -0.140 4.140 5 C -0.098 4.098 6 C -0.157 4.157 7 C 0.335 3.665 8 O -0.476 6.476 9 N -0.331 5.331 10 C 0.029 3.971 11 H 0.080 0.920 12 C 0.044 3.956 13 N -0.323 5.323 14 C -0.377 4.377 15 H 0.089 0.911 16 C -0.246 4.246 17 N -0.581 5.581 18 Si 0.779 3.221 19 H -0.182 1.182 20 H -0.217 1.217 21 H -0.232 1.232 22 C 0.010 3.990 23 C -0.154 4.154 24 C -0.107 4.107 25 H 0.096 0.904 26 C -0.192 4.192 27 C -0.098 4.098 28 C -0.143 4.143 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.170 0.830 33 H 0.137 0.863 34 H 0.244 0.756 35 H 0.064 0.936 36 H 0.015 0.985 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.159 0.841 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.647 -9.788 13.487 20.920 hybrid contribution 0.707 -0.273 -1.322 1.524 sum -11.940 -10.062 12.165 19.794 Atomic orbital electron populations 1.24762 0.95212 1.03799 0.95385 1.21919 0.95884 0.95064 1.03192 1.19651 0.93222 0.94549 0.96343 1.21444 0.93913 0.97856 1.00747 1.21253 1.00425 0.91809 0.96356 1.20071 0.94948 0.92815 1.07882 1.18717 0.86971 0.85134 0.75694 1.90704 1.15623 1.88343 1.52961 1.45610 1.10335 1.04596 1.72572 1.21510 0.94930 0.83491 0.97147 0.92025 1.20860 0.88047 0.97233 0.89432 1.44173 1.19985 1.46092 1.22081 1.19460 0.92095 1.29381 0.96778 0.91092 1.25703 0.96290 1.02464 1.00142 1.70177 1.00919 1.44686 1.42293 0.85448 0.78140 0.79115 0.79366 1.18173 1.21725 1.23219 1.21161 0.92662 0.90933 0.94231 1.22024 0.96273 1.02123 0.95030 1.21334 0.96499 0.97002 0.95822 0.90431 1.21765 1.01563 1.02111 0.93810 1.21396 0.91870 0.99931 0.96651 1.21537 1.01450 0.90748 1.00532 0.87273 0.85489 0.84776 0.83006 0.86301 0.75635 0.93582 0.98470 0.94691 0.96863 0.92303 0.88750 0.91991 0.93299 0.90276 0.92578 0.84145 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 14.15 66.65 0.94 -0.86 16 2 C -0.14 -2.20 9.90 23.59 0.23 -1.97 16 3 C -0.04 -0.81 5.87 -20.08 -0.12 -0.93 16 4 C -0.12 -2.99 9.76 22.48 0.22 -2.77 16 5 C -0.08 -2.54 9.57 22.48 0.22 -2.32 16 6 C -0.15 -5.27 5.88 -20.05 -0.12 -5.39 16 7 C 0.55 22.64 7.73 86.74 0.67 23.31 16 8 O -0.59 -29.77 16.00 -3.94 -0.06 -29.83 16 9 N -0.68 -25.09 4.20 -445.19 -1.87 -26.96 16 10 C 0.14 5.35 2.24 45.07 0.10 5.45 16 11 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 12 C 0.17 8.73 4.90 86.36 0.42 9.15 16 13 N -0.60 -29.53 2.91 -699.08 -2.04 -31.56 16 14 C -0.25 -13.54 9.58 84.04 0.81 -12.74 16 15 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 16 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 17 N -0.93 -58.85 11.20 21.65 0.24 -58.61 16 18 Si 0.95 47.36 29.59 68.60 2.03 49.38 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 22 C 0.14 5.17 6.50 86.36 0.56 5.73 16 23 C -0.12 -3.24 5.22 30.78 0.16 -3.08 16 24 C -0.09 -2.59 2.48 -10.66 -0.03 -2.61 16 25 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 26 C -0.14 -3.05 9.05 71.98 0.65 -2.40 16 27 C -0.08 -2.12 9.52 22.49 0.21 -1.91 16 28 C -0.13 -2.70 9.38 22.47 0.21 -2.49 16 29 H 0.11 1.13 6.02 -2.91 -0.02 1.11 16 30 H 0.13 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.12 4.07 7.64 -2.91 -0.02 4.05 16 34 H 0.41 12.66 4.65 -92.71 -0.43 12.23 16 35 H 0.05 2.83 6.06 -2.39 -0.01 2.81 16 36 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 1.66 6.41 -2.39 -0.02 1.64 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.22 7.54 -2.39 -0.02 1.20 16 45 H 0.14 3.18 6.38 -2.91 -0.02 3.16 16 46 H 0.16 2.37 6.15 -2.91 -0.02 2.35 16 Total: -1.00 -76.37 367.48 4.42 -71.95 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.55 Total: 24.00 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.57 Total: 1.63 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -3.66 Total: -117.14 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.06 Total: -29.83 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -76.37 4.42 -71.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968341298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.445 kcal (2) G-P(sol) polarization free energy of solvation -76.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds