Wall clock time and date at job start Tue Mar 31 2020 12:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.00157 * 2 1 4 4 C 1.54330 * 109.88419 * 238.90192 * 2 1 3 5 5 H 1.08996 * 110.71860 * 144.40944 * 4 2 1 6 6 N 1.46499 * 110.71474 * 21.14200 * 4 2 1 7 7 C 1.36943 * 119.99777 * 160.02612 * 6 4 2 8 8 H 1.07998 * 119.99804 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99784 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00339 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99463 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47559 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47254 * 120.00579 * 11 9 7 14 14 H 1.48506 * 109.47064 * 240.00127 * 11 9 7 15 15 C 1.55157 * 102.94049 * 262.77890 * 4 2 1 16 16 C 1.54901 * 101.58260 * 324.49554 * 15 4 2 17 17 N 1.47019 * 109.88261 * 121.09553 * 2 1 3 18 18 C 1.34773 * 125.64671 * 300.44156 * 17 2 1 19 19 O 1.21287 * 120.00177 * 0.02562 * 18 17 2 20 20 C 1.50706 * 120.00009 * 180.02562 * 18 17 2 21 21 C 1.54337 * 110.82246 * 295.89018 * 20 18 17 22 22 C 1.51674 * 105.02628 * 215.56870 * 21 20 18 23 23 C 1.38491 * 130.31690 * 197.10300 * 22 21 20 24 24 C 1.38102 * 120.21912 * 179.79853 * 23 22 21 25 25 C 1.38253 * 119.93403 * 0.02562 * 24 23 22 26 26 C 1.38107 * 119.93335 * 359.97438 * 25 24 23 27 27 C 1.38221 * 109.83191 * 16.91992 * 22 21 20 28 28 C 1.51365 * 109.76082 * 0.16020 * 27 22 21 29 29 H 1.08997 * 109.47416 * 181.09089 * 1 2 3 30 30 H 1.08993 * 109.47099 * 301.10229 * 1 2 3 31 31 H 1.09007 * 109.46548 * 61.09641 * 1 2 3 32 32 H 0.97004 * 120.00550 * 340.02055 * 6 4 2 33 33 H 0.96995 * 119.99745 * 179.97438 * 10 9 7 34 34 H 1.09002 * 111.00633 * 82.57450 * 15 4 2 35 35 H 1.09001 * 110.99990 * 206.42006 * 15 4 2 36 36 H 1.09004 * 110.36831 * 155.84850 * 16 15 4 37 37 H 1.08999 * 110.37045 * 278.17261 * 16 15 4 38 38 H 1.08996 * 110.72733 * 59.29748 * 20 18 17 39 39 H 1.09007 * 110.30450 * 334.35658 * 21 20 18 40 40 H 1.09004 * 110.30325 * 96.49920 * 21 20 18 41 41 H 1.08001 * 119.88913 * 359.80013 * 23 22 21 42 42 H 1.08003 * 120.03407 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.03426 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.89224 * 179.97438 * 26 25 24 45 45 H 1.09004 * 110.30182 * 223.88810 * 28 27 22 46 46 H 1.09000 * 110.38375 * 101.78112 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9657 -0.2832 -1.6182 6 7 1.0293 -0.8026 -2.2875 7 6 1.3878 -1.0417 -3.5873 8 1 2.4266 -1.1908 -3.8423 9 6 0.4160 -1.0925 -4.5772 10 7 -0.8500 -0.9103 -4.2666 11 14 0.9052 -1.4179 -6.3504 12 1 2.3783 -1.5853 -6.4349 13 1 0.2376 -2.6551 -6.8290 14 1 0.4884 -0.2714 -7.1973 15 6 2.3518 -2.1695 -0.6923 16 6 2.8568 -1.8498 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.7753 -0.3844 2.4656 19 8 1.0784 0.5756 2.7180 20 6 2.3565 -1.2088 3.5854 21 6 1.7939 -2.6457 3.5580 22 6 1.6679 -3.0465 5.0154 23 6 1.5241 -4.2977 5.5914 24 6 1.4312 -4.4248 6.9634 25 6 1.4812 -3.2998 7.7654 26 6 1.6245 -2.0512 7.1929 27 6 1.7183 -1.9217 5.8171 28 6 1.8776 -0.6867 4.9567 29 1 -0.3634 -1.0274 0.0196 30 1 -0.3633 0.5308 0.8799 31 1 -0.3633 0.4968 -0.8997 32 1 0.0963 -0.6684 -2.0586 33 1 -1.5290 -0.9454 -4.9584 34 1 1.4451 -2.7737 -0.6603 35 1 3.1270 -2.6619 -1.2795 36 1 2.7087 -2.7081 1.3923 37 1 3.9091 -1.5668 0.7129 38 1 3.4452 -1.2178 3.5329 39 1 0.8159 -2.6599 3.0767 40 1 2.4822 -3.3115 3.0372 41 1 1.4847 -5.1770 4.9655 42 1 1.3196 -5.4021 7.4094 43 1 1.4082 -3.3972 8.8385 44 1 1.6630 -1.1727 7.8200 45 1 2.6229 -0.0185 5.3884 46 1 0.9231 -0.1707 4.8527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987045906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:29 Heat of formation + Delta-G solvation = 9.022262 kcal Electronic energy + Delta-G solvation = -26113.170197 eV Core-core repulsion = 22581.671852 eV Total energy + Delta-G solvation = -3531.498345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81165 -39.55979 -37.60461 -35.54926 -34.19737 -31.82375 -31.53452 -30.73846 -29.72408 -28.53590 -27.48304 -25.22227 -24.24340 -23.23307 -22.38167 -21.26755 -21.11999 -19.44436 -18.55850 -17.60497 -17.14002 -16.50255 -15.90282 -15.64444 -15.38020 -15.01495 -14.53805 -14.42576 -13.78075 -13.61099 -13.45591 -13.31659 -13.15766 -13.03746 -12.81186 -12.54412 -12.33603 -12.02646 -11.78765 -11.65205 -11.42774 -11.32914 -11.27087 -11.17973 -10.99304 -10.95396 -10.82332 -10.47151 -10.21398 -9.98417 -9.74797 -9.49078 -9.01144 -8.97058 -8.69446 -8.40771 -7.04285 -5.83695 -3.13518 1.14780 1.18607 2.73415 3.10709 3.39391 3.45226 3.47485 3.55171 4.11673 4.26889 4.53399 4.63771 4.75771 4.79483 4.84614 4.98138 5.01560 5.06373 5.25949 5.30039 5.34960 5.40326 5.50959 5.53189 5.55493 5.58943 5.62903 5.68048 5.82036 5.85746 5.92665 5.99630 6.06245 6.10278 6.21092 6.23140 6.29755 6.31534 6.45413 6.54412 6.55207 6.70357 6.79278 6.82268 6.97458 7.64913 7.75663 8.31775 8.35273 9.46602 10.01723 10.36525 11.38846 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.002712 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.068632 B =10320.318577 C =10705.131381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.071 0.929 4 C 0.174 3.826 5 H 0.062 0.938 6 N -0.718 5.718 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.153 4.153 16 C 0.091 3.909 17 N -0.606 5.606 18 C 0.536 3.464 19 O -0.540 6.540 20 C -0.105 4.105 21 C -0.072 4.072 22 C -0.095 4.095 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.108 4.108 27 C -0.091 4.091 28 C -0.067 4.067 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.391 0.609 33 H 0.256 0.744 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 -5.491 21.737 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.089 0.911 4 C 0.062 3.938 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C -0.195 4.195 16 C -0.032 4.032 17 N -0.339 5.339 18 C 0.323 3.677 19 O -0.418 6.418 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.096 4.096 23 C -0.123 4.123 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.126 4.126 27 C -0.091 4.091 28 C -0.105 4.105 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.229 0.771 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.673 -4.959 21.741 23.582 hybrid contribution -0.013 -0.346 -0.938 1.000 sum 7.659 -5.305 20.803 22.794 Atomic orbital electron populations 1.21999 0.94558 1.02381 1.02696 1.21832 0.95393 0.95757 0.84539 0.91102 1.21179 0.93195 0.92056 0.87401 0.91974 1.42694 1.05221 1.85228 1.02992 1.19278 0.93049 1.41102 0.84013 0.91021 1.24760 0.95308 1.02515 0.98157 1.69667 0.99356 1.56354 1.32475 0.86111 0.77513 0.77437 0.85043 1.20520 1.21853 1.21832 1.23546 1.01676 1.01326 0.92915 1.22544 0.94531 0.88714 0.97439 1.48571 1.50049 1.30391 1.04922 1.19880 0.80687 0.84847 0.82248 1.90676 1.38862 1.29088 1.83168 1.21929 1.01714 0.95122 0.93888 1.21122 1.02369 0.94363 0.93062 1.20600 1.00011 0.93437 0.95507 1.20636 1.00490 0.96315 0.94867 1.21026 1.01004 0.98668 0.93435 1.21032 1.00738 0.92427 0.99716 1.20621 1.00887 0.97648 0.93460 1.20622 0.99273 0.95679 0.93520 1.20939 1.03592 0.94859 0.91074 0.92564 0.92161 0.90215 0.77075 0.93416 0.90654 0.90612 0.90884 0.91672 0.87684 0.89484 0.89559 0.86132 0.85954 0.85984 0.86203 0.90269 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 7.95 37.16 0.30 -2.67 16 2 C 0.13 2.24 3.48 -66.95 -0.23 2.01 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.17 3.26 3.46 -66.09 -0.23 3.03 16 5 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 6 N -0.72 -17.11 5.02 -51.65 -0.26 -17.37 16 7 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 11 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C -0.15 -2.41 6.77 -24.59 -0.17 -2.58 16 16 C 0.09 1.13 6.62 -2.53 -0.02 1.11 16 17 N -0.61 -8.97 3.08 -163.02 -0.50 -9.47 16 18 C 0.54 7.93 6.89 -10.98 -0.08 7.86 16 19 O -0.54 -9.81 14.44 5.55 0.08 -9.73 16 20 C -0.11 -1.18 2.89 -90.36 -0.26 -1.44 16 21 C -0.07 -0.75 5.18 -26.70 -0.14 -0.89 16 22 C -0.10 -1.02 6.15 -104.05 -0.64 -1.66 16 23 C -0.11 -1.00 10.04 -39.54 -0.40 -1.40 16 24 C -0.12 -1.06 10.05 -39.63 -0.40 -1.46 16 25 C -0.12 -1.04 10.05 -39.62 -0.40 -1.44 16 26 C -0.11 -1.03 10.04 -39.53 -0.40 -1.43 16 27 C -0.09 -0.98 6.14 -104.20 -0.64 -1.62 16 28 C -0.07 -0.75 6.09 -26.85 -0.16 -0.91 16 29 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.06 1.13 6.77 -51.93 -0.35 0.78 16 31 H 0.08 1.63 6.67 -51.92 -0.35 1.28 16 32 H 0.39 9.90 4.92 -40.82 -0.20 9.70 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.75 5.07 -51.93 -0.26 0.49 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.02 7.89 -51.93 -0.41 0.61 16 40 H 0.09 0.75 6.54 -51.93 -0.34 0.41 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.30 7.02 -51.93 -0.36 0.93 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -31.03 362.03 -10.52 -41.55 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.89 Total: 9.96 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -4.10 Total: -10.49 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.04 Total: -53.52 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.03 -10.52 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987045906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.569 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds