Wall clock time and date at job start Tue Mar 31 2020 12:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.00157 * 2 1 4 4 C 1.54330 * 109.88419 * 238.90192 * 2 1 3 5 5 H 1.08996 * 110.71860 * 144.40944 * 4 2 1 6 6 N 1.46499 * 110.71474 * 21.14200 * 4 2 1 7 7 C 1.36943 * 119.99777 * 160.02612 * 6 4 2 8 8 H 1.07998 * 119.99804 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99784 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00339 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99463 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47559 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47254 * 120.00579 * 11 9 7 14 14 H 1.48506 * 109.47064 * 240.00127 * 11 9 7 15 15 C 1.55157 * 102.94049 * 262.77890 * 4 2 1 16 16 C 1.54901 * 101.58260 * 324.49554 * 15 4 2 17 17 N 1.47019 * 109.88261 * 121.09553 * 2 1 3 18 18 C 1.34773 * 125.64671 * 300.44156 * 17 2 1 19 19 O 1.21287 * 120.00177 * 0.02562 * 18 17 2 20 20 C 1.50706 * 120.00009 * 180.02562 * 18 17 2 21 21 C 1.54337 * 110.82246 * 295.89018 * 20 18 17 22 22 C 1.51674 * 105.02628 * 215.56870 * 21 20 18 23 23 C 1.38491 * 130.31690 * 197.10300 * 22 21 20 24 24 C 1.38102 * 120.21912 * 179.79853 * 23 22 21 25 25 C 1.38253 * 119.93403 * 0.02562 * 24 23 22 26 26 C 1.38107 * 119.93335 * 359.97438 * 25 24 23 27 27 C 1.38221 * 109.83191 * 16.91992 * 22 21 20 28 28 C 1.51365 * 109.76082 * 0.16020 * 27 22 21 29 29 H 1.08997 * 109.47416 * 181.09089 * 1 2 3 30 30 H 1.08993 * 109.47099 * 301.10229 * 1 2 3 31 31 H 1.09007 * 109.46548 * 61.09641 * 1 2 3 32 32 H 0.97004 * 120.00550 * 340.02055 * 6 4 2 33 33 H 0.96995 * 119.99745 * 179.97438 * 10 9 7 34 34 H 1.09002 * 111.00633 * 82.57450 * 15 4 2 35 35 H 1.09001 * 110.99990 * 206.42006 * 15 4 2 36 36 H 1.09004 * 110.36831 * 155.84850 * 16 15 4 37 37 H 1.08999 * 110.37045 * 278.17261 * 16 15 4 38 38 H 1.08996 * 110.72733 * 59.29748 * 20 18 17 39 39 H 1.09007 * 110.30450 * 334.35658 * 21 20 18 40 40 H 1.09004 * 110.30325 * 96.49920 * 21 20 18 41 41 H 1.08001 * 119.88913 * 359.80013 * 23 22 21 42 42 H 1.08003 * 120.03407 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.03426 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.89224 * 179.97438 * 26 25 24 45 45 H 1.09004 * 110.30182 * 223.88810 * 28 27 22 46 46 H 1.09000 * 110.38375 * 101.78112 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9657 -0.2832 -1.6182 6 7 1.0293 -0.8026 -2.2875 7 6 1.3878 -1.0417 -3.5873 8 1 2.4266 -1.1908 -3.8423 9 6 0.4160 -1.0925 -4.5772 10 7 -0.8500 -0.9103 -4.2666 11 14 0.9052 -1.4179 -6.3504 12 1 2.3783 -1.5853 -6.4349 13 1 0.2376 -2.6551 -6.8290 14 1 0.4884 -0.2714 -7.1973 15 6 2.3518 -2.1695 -0.6923 16 6 2.8568 -1.8498 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.7753 -0.3844 2.4656 19 8 1.0784 0.5756 2.7180 20 6 2.3565 -1.2088 3.5854 21 6 1.7939 -2.6457 3.5580 22 6 1.6679 -3.0465 5.0154 23 6 1.5241 -4.2977 5.5914 24 6 1.4312 -4.4248 6.9634 25 6 1.4812 -3.2998 7.7654 26 6 1.6245 -2.0512 7.1929 27 6 1.7183 -1.9217 5.8171 28 6 1.8776 -0.6867 4.9567 29 1 -0.3634 -1.0274 0.0196 30 1 -0.3633 0.5308 0.8799 31 1 -0.3633 0.4968 -0.8997 32 1 0.0963 -0.6684 -2.0586 33 1 -1.5290 -0.9454 -4.9584 34 1 1.4451 -2.7737 -0.6603 35 1 3.1270 -2.6619 -1.2795 36 1 2.7087 -2.7081 1.3923 37 1 3.9091 -1.5668 0.7129 38 1 3.4452 -1.2178 3.5329 39 1 0.8159 -2.6599 3.0767 40 1 2.4822 -3.3115 3.0372 41 1 1.4847 -5.1770 4.9655 42 1 1.3196 -5.4021 7.4094 43 1 1.4082 -3.3972 8.8385 44 1 1.6630 -1.1727 7.8200 45 1 2.6229 -0.0185 5.3884 46 1 0.9231 -0.1707 4.8527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987045906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:28 Heat of formation + Delta-G solvation = -7.647312 kcal Electronic energy + Delta-G solvation = -26113.893044 eV Core-core repulsion = 22581.671852 eV Total energy + Delta-G solvation = -3532.221192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82030 -40.56826 -38.90512 -36.41717 -35.91182 -33.46901 -32.31851 -32.12153 -31.01913 -29.76300 -28.27699 -26.78216 -25.63456 -24.72587 -23.40641 -22.12968 -21.85351 -20.80252 -19.80060 -19.43234 -18.37060 -17.28336 -16.95788 -16.70165 -16.65627 -16.30653 -15.85295 -15.70398 -15.27516 -14.94708 -14.56387 -14.22870 -14.13332 -14.07038 -13.90700 -13.72025 -13.46531 -13.35059 -13.15873 -13.03783 -12.89639 -12.82900 -12.55968 -12.17125 -12.15498 -12.12211 -12.01314 -11.97981 -11.66103 -11.59494 -11.49179 -10.91727 -10.78166 -9.71081 -9.65116 -9.42314 -9.00339 -7.93199 -5.22098 0.44518 0.49526 1.49649 1.50344 1.57450 1.60061 1.91562 2.58199 2.85523 3.26159 3.35259 3.42080 3.66768 3.78450 3.90696 3.92903 4.01649 4.12902 4.18399 4.20861 4.28439 4.31860 4.36786 4.42328 4.56136 4.59388 4.66196 4.67355 4.70066 4.78874 4.85896 4.86631 4.94281 5.04418 5.07328 5.18264 5.20644 5.25026 5.26966 5.35683 5.51318 5.56541 5.56735 5.63852 5.73171 6.13110 6.28697 6.57580 7.13098 7.35900 8.09809 8.32971 9.30782 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.002712 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.068632 B =10320.318577 C =10705.131381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.134 3.866 3 H 0.064 0.936 4 C 0.165 3.835 5 H 0.067 0.933 6 N -0.733 5.733 7 C -0.235 4.235 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.972 3.028 12 H -0.262 1.262 13 H -0.296 1.296 14 H -0.298 1.298 15 C -0.144 4.144 16 C 0.098 3.902 17 N -0.605 5.605 18 C 0.533 3.467 19 O -0.580 6.580 20 C -0.095 4.095 21 C -0.067 4.067 22 C -0.110 4.110 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.109 4.109 28 C -0.065 4.065 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.380 0.620 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.133 0.867 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.089 0.911 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 -7.333 23.319 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.082 0.918 4 C 0.055 3.945 5 H 0.085 0.915 6 N -0.376 5.376 7 C -0.366 4.366 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.224 1.224 14 H -0.226 1.226 15 C -0.185 4.185 16 C -0.023 4.023 17 N -0.338 5.338 18 C 0.323 3.677 19 O -0.460 6.460 20 C -0.116 4.116 21 C -0.104 4.104 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.109 4.109 28 C -0.103 4.103 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.216 0.784 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.151 0.849 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.150 0.850 45 H 0.108 0.892 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.332 -6.826 23.358 26.437 hybrid contribution -0.810 0.244 -1.297 1.549 sum 9.522 -6.582 22.060 24.913 Atomic orbital electron populations 1.21810 0.95930 1.01291 1.01141 1.21563 0.94149 0.95774 0.85540 0.91761 1.21393 0.92005 0.94364 0.86700 0.91487 1.42882 1.05805 1.85451 1.03478 1.19687 0.93321 1.38545 0.85085 0.89984 1.25554 0.95401 1.03895 1.02084 1.69830 1.00371 1.58847 1.33220 0.85086 0.77970 0.76464 0.80301 1.18616 1.22357 1.22608 1.23353 1.01441 0.98546 0.95173 1.22697 0.95340 0.88804 0.95503 1.48590 1.50206 1.30742 1.04253 1.20572 0.79906 0.84574 0.82692 1.90663 1.40613 1.31039 1.83727 1.21929 1.02938 0.94799 0.91966 1.21078 1.01890 0.94074 0.93399 1.20702 1.00935 0.93980 0.95426 1.20908 1.00274 0.96410 0.95665 1.21388 0.99900 0.99866 0.93212 1.21378 0.99712 0.91980 1.01093 1.20888 1.00742 0.98792 0.93245 1.20684 1.00603 0.95388 0.94216 1.20865 1.02586 0.95327 0.91502 0.93401 0.92671 0.92562 0.78390 0.94161 0.92560 0.89262 0.87977 0.88667 0.84904 0.91355 0.87241 0.84660 0.83598 0.83625 0.85004 0.89202 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 7.95 71.98 0.57 -5.04 16 2 C 0.13 4.70 3.48 45.34 0.16 4.85 16 3 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.17 6.10 3.46 46.18 0.16 6.26 16 5 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 6 N -0.73 -35.44 5.02 -317.32 -1.59 -37.03 16 7 C -0.23 -12.43 9.98 84.03 0.84 -11.59 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 10 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 11 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 13 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 14 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 15 C -0.14 -4.25 6.77 31.98 0.22 -4.04 16 16 C 0.10 2.11 6.62 86.85 0.58 2.69 16 17 N -0.61 -17.08 3.08 -788.05 -2.43 -19.50 16 18 C 0.53 15.33 6.89 87.66 0.60 15.93 16 19 O -0.58 -21.43 14.44 -3.05 -0.04 -21.47 16 20 C -0.10 -1.94 2.89 -10.63 -0.03 -1.97 16 21 C -0.07 -1.25 5.18 30.61 0.16 -1.10 16 22 C -0.11 -2.14 6.15 -19.50 -0.12 -2.26 16 23 C -0.11 -1.91 10.04 22.30 0.22 -1.68 16 24 C -0.13 -1.81 10.05 22.24 0.22 -1.59 16 25 C -0.12 -1.80 10.05 22.24 0.22 -1.58 16 26 C -0.12 -2.06 10.04 22.30 0.22 -1.83 16 27 C -0.11 -2.20 6.14 -19.59 -0.12 -2.32 16 28 C -0.07 -1.40 6.09 30.52 0.19 -1.22 16 29 H 0.05 1.90 8.08 -2.39 -0.02 1.89 16 30 H 0.05 2.18 6.77 -2.39 -0.02 2.16 16 31 H 0.06 2.45 6.67 -2.38 -0.02 2.43 16 32 H 0.38 19.96 4.92 -92.71 -0.46 19.51 16 33 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.10 1.67 5.07 -2.38 -0.01 1.65 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 1.54 7.89 -2.38 -0.02 1.52 16 40 H 0.11 1.48 6.54 -2.38 -0.02 1.46 16 41 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.07 1.97 7.02 -2.39 -0.02 1.95 16 Total: -1.00 -69.21 362.03 3.33 -65.88 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.53 Total: 33.93 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.56 Total: -10.36 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -3.74 Total: -115.17 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.47 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.21 3.33 -65.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987045906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.236 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds