Wall clock time and date at job start Tue Mar 31 2020 12:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 6 6 H 1.08995 * 111.00884 * 82.60656 * 5 4 2 7 7 N 1.46509 * 111.00063 * 206.42259 * 5 4 2 8 8 C 1.36934 * 119.99678 * 204.99693 * 7 5 4 9 9 H 1.08004 * 120.00336 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99829 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00039 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00003 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47028 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47338 * 119.99647 * 12 10 8 15 15 H 1.48501 * 109.46807 * 239.99785 * 12 10 8 16 16 C 1.54904 * 101.57813 * 324.49251 * 5 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34777 * 125.64945 * 61.54400 * 17 2 1 19 19 O 1.21287 * 119.99819 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00034 * 180.02562 * 18 17 2 21 21 C 1.54346 * 110.82433 * 292.97472 * 20 18 17 22 22 C 1.51374 * 105.17006 * 215.43105 * 21 20 18 23 23 C 1.38496 * 130.38650 * 197.16642 * 22 21 20 24 24 C 1.38106 * 120.21530 * 180.02562 * 23 22 21 25 25 C 1.38258 * 119.93181 * 0.02972 * 24 23 22 26 26 C 1.38106 * 119.93543 * 359.97438 * 25 24 23 27 27 C 1.38214 * 109.76089 * 17.18949 * 22 21 20 28 28 C 1.51366 * 109.75742 * 359.97438 * 27 22 21 29 29 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 30 30 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 31 31 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 32 32 H 1.09002 * 110.71769 * 260.12351 * 4 2 1 33 33 H 1.08995 * 110.72434 * 23.22722 * 4 2 1 34 34 H 0.96995 * 119.99825 * 24.99645 * 7 5 4 35 35 H 0.97002 * 120.00245 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.36826 * 155.85543 * 16 5 4 37 37 H 1.09001 * 110.36870 * 278.06153 * 16 5 4 38 38 H 1.08996 * 110.72884 * 56.59886 * 20 18 17 39 39 H 1.09005 * 110.30244 * 334.35200 * 21 20 18 40 40 H 1.08996 * 110.30810 * 96.50542 * 21 20 18 41 41 H 1.07997 * 119.89588 * 0.03065 * 23 22 21 42 42 H 1.07995 * 120.03490 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.02732 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.88805 * 180.02562 * 26 25 24 45 45 H 1.09006 * 110.30124 * 223.89212 * 28 27 22 46 46 H 1.09000 * 110.30433 * 101.74375 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 6 3.2901 -1.5101 0.6953 6 1 4.1667 -0.8630 0.6648 7 7 3.5572 -2.7145 1.4855 8 6 4.8216 -3.2386 1.5286 9 1 5.6219 -2.7639 0.9803 10 6 5.0746 -4.3801 2.2768 11 7 4.0994 -4.9583 2.9454 12 14 6.7995 -5.0947 2.3361 13 1 7.7081 -4.2642 1.5055 14 1 7.2829 -5.1053 3.7401 15 1 6.7784 -6.4829 1.8093 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8116 -0.3625 -2.4652 19 8 1.1461 0.6193 -2.7188 20 6 2.3907 -1.1898 -3.5837 21 6 3.9309 -1.0911 -3.5986 22 6 4.3159 -1.1261 -5.0621 23 6 5.5369 -1.3842 -5.6629 24 6 5.6533 -1.3603 -7.0388 25 6 4.5481 -1.0773 -7.8198 26 6 3.3298 -0.8196 -7.2226 27 6 3.2110 -0.8438 -5.8429 28 6 2.0076 -0.6004 -4.9576 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 2.3504 -0.0432 2.0211 33 1 1.3050 -1.4434 1.6204 34 1 2.8385 -3.1406 1.9782 35 1 4.2761 -5.7562 3.4679 36 1 3.6778 -2.0299 -1.3885 37 1 2.1972 -2.7715 -0.7109 38 1 2.0667 -2.2275 -3.5037 39 1 4.2542 -0.1542 -3.1448 40 1 4.3694 -1.9385 -3.0718 41 1 6.4007 -1.6050 -5.0535 42 1 6.6068 -1.5615 -7.5042 43 1 4.6375 -1.0577 -8.8960 44 1 2.4669 -0.5990 -7.8334 45 1 1.1330 -1.1126 -5.3589 46 1 1.8132 0.4685 -4.8691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989479025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:06 Heat of formation + Delta-G solvation = -1.536471 kcal Electronic energy + Delta-G solvation = -26136.711166 eV Core-core repulsion = 22604.754960 eV Total energy + Delta-G solvation = -3531.956206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72948 -39.48291 -37.50716 -35.48078 -34.23983 -31.87428 -31.45055 -31.38703 -29.18140 -28.41761 -27.36998 -25.49088 -24.28061 -23.54618 -21.81221 -21.07209 -20.68999 -20.26882 -18.58766 -17.42761 -17.02891 -16.45709 -16.13943 -15.67810 -15.13309 -15.01308 -14.38561 -14.19078 -13.79930 -13.50115 -13.39421 -13.34303 -13.23106 -12.97820 -12.79583 -12.60032 -12.34215 -12.27314 -12.11912 -11.71827 -11.36249 -11.25511 -11.21878 -11.13718 -11.04742 -10.90775 -10.76178 -10.64511 -10.29932 -10.04867 -9.82133 -9.60216 -9.07197 -8.91000 -8.59365 -8.37052 -7.14292 -5.90133 -3.21169 1.24527 1.28415 2.75918 3.14856 3.35810 3.42119 3.44051 3.64880 4.23481 4.35492 4.48391 4.72266 4.87329 4.88894 4.95341 5.02411 5.09877 5.11803 5.21057 5.31158 5.39665 5.46838 5.50941 5.54403 5.62896 5.64654 5.69196 5.75371 5.75868 5.81165 5.96810 6.00201 6.07589 6.09118 6.12692 6.18166 6.32170 6.33223 6.39262 6.43357 6.46286 6.55775 6.65162 6.79733 6.89401 7.58824 7.78796 8.26847 8.34021 9.39453 9.92844 10.27688 11.31819 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.003970 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.819356 B = 7051.508706 C = 9316.096675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.711 5.711 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.067 3.933 17 N -0.606 5.606 18 C 0.537 3.463 19 O -0.550 6.550 20 C -0.105 4.105 21 C -0.072 4.072 22 C -0.093 4.093 23 C -0.104 4.104 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.092 4.092 28 C -0.067 4.067 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.078 0.922 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 8.379 -16.012 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.059 4.059 17 N -0.339 5.339 18 C 0.326 3.674 19 O -0.429 6.429 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.093 4.093 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.092 4.092 28 C -0.104 4.104 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.096 0.904 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.785 8.850 -16.182 18.653 hybrid contribution 0.743 -0.825 0.197 1.127 sum -2.042 8.025 -15.985 18.003 Atomic orbital electron populations 1.22123 0.95182 1.02163 1.02362 1.21510 0.94208 0.96071 0.84776 0.91092 1.23051 0.99193 0.99697 0.95757 1.21280 0.94661 0.89488 0.88531 0.91428 1.42328 1.09552 1.27848 1.55361 1.19294 0.86756 1.06925 1.25045 0.90880 1.24767 0.97626 0.98289 0.99730 1.69666 1.30790 1.22227 1.34901 0.86129 0.83846 0.78870 0.77379 1.20432 1.21744 1.21749 1.23628 0.94696 0.87627 0.99924 1.48592 1.51748 1.29059 1.04472 1.19915 0.80202 0.84889 0.82430 1.90642 1.40781 1.28070 1.83372 1.21913 0.96300 1.00821 0.93628 1.21042 0.93252 1.03698 0.92949 1.20546 0.93740 0.99423 0.95570 1.20666 0.96647 1.00209 0.94698 1.21026 0.98714 1.00851 0.93518 1.21018 0.92788 1.00571 0.99653 1.20597 0.97819 1.01011 0.93271 1.20622 0.96020 0.99066 0.93538 1.20935 0.95361 1.03166 0.90934 0.91930 0.91645 0.92573 0.90374 0.90412 0.77843 0.93347 0.90818 0.91298 0.87586 0.89682 0.89172 0.86020 0.85965 0.86043 0.86288 0.90373 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.11 37.16 0.34 -1.82 16 2 C 0.14 1.99 3.45 -66.95 -0.23 1.76 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -2.10 6.12 -24.89 -0.15 -2.25 16 5 C 0.17 3.10 3.71 -65.78 -0.24 2.85 16 6 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 7 N -0.71 -16.24 5.24 -51.34 -0.27 -16.51 16 8 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 9 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.58 13.06 55.49 0.72 -25.85 16 12 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C 0.07 1.07 6.33 -2.53 -0.02 1.06 16 17 N -0.61 -9.10 3.07 -163.02 -0.50 -9.60 16 18 C 0.54 8.14 6.89 -10.99 -0.08 8.07 16 19 O -0.55 -9.63 14.55 5.55 0.08 -9.55 16 20 C -0.11 -1.34 2.83 -90.37 -0.26 -1.60 16 21 C -0.07 -0.89 5.31 -26.85 -0.14 -1.03 16 22 C -0.09 -1.14 6.14 -104.20 -0.64 -1.78 16 23 C -0.10 -1.17 10.04 -39.53 -0.40 -1.56 16 24 C -0.12 -1.22 10.05 -39.62 -0.40 -1.62 16 25 C -0.12 -1.18 10.05 -39.62 -0.40 -1.58 16 26 C -0.11 -1.15 10.04 -39.53 -0.40 -1.55 16 27 C -0.09 -1.11 6.14 -104.21 -0.64 -1.75 16 28 C -0.07 -0.80 6.10 -26.86 -0.16 -0.97 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.96 6.90 -51.93 -0.36 0.60 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.21 7.72 -51.93 -0.40 0.81 16 34 H 0.39 9.48 7.77 -40.82 -0.32 9.16 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.07 1.13 5.31 -51.93 -0.28 0.86 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 40 H 0.09 1.09 6.63 -51.93 -0.34 0.75 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 1.32 6.98 -51.93 -0.36 0.95 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -29.51 367.21 -10.60 -40.11 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.08 Total: 10.26 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -4.06 Total: -10.61 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.04 Total: -51.97 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.51 -10.60 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989479025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.570 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds