Wall clock time and date at job start Tue Mar 31 2020 12:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 6 6 H 1.08995 * 111.00884 * 82.60656 * 5 4 2 7 7 N 1.46509 * 111.00063 * 206.42259 * 5 4 2 8 8 C 1.36934 * 119.99678 * 204.99693 * 7 5 4 9 9 H 1.08004 * 120.00336 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99829 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00039 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00003 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47028 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47338 * 119.99647 * 12 10 8 15 15 H 1.48501 * 109.46807 * 239.99785 * 12 10 8 16 16 C 1.54904 * 101.57813 * 324.49251 * 5 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34777 * 125.64945 * 61.54400 * 17 2 1 19 19 O 1.21287 * 119.99819 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00034 * 180.02562 * 18 17 2 21 21 C 1.54346 * 110.82433 * 292.97472 * 20 18 17 22 22 C 1.51374 * 105.17006 * 215.43105 * 21 20 18 23 23 C 1.38496 * 130.38650 * 197.16642 * 22 21 20 24 24 C 1.38106 * 120.21530 * 180.02562 * 23 22 21 25 25 C 1.38258 * 119.93181 * 0.02972 * 24 23 22 26 26 C 1.38106 * 119.93543 * 359.97438 * 25 24 23 27 27 C 1.38214 * 109.76089 * 17.18949 * 22 21 20 28 28 C 1.51366 * 109.75742 * 359.97438 * 27 22 21 29 29 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 30 30 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 31 31 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 32 32 H 1.09002 * 110.71769 * 260.12351 * 4 2 1 33 33 H 1.08995 * 110.72434 * 23.22722 * 4 2 1 34 34 H 0.96995 * 119.99825 * 24.99645 * 7 5 4 35 35 H 0.97002 * 120.00245 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.36826 * 155.85543 * 16 5 4 37 37 H 1.09001 * 110.36870 * 278.06153 * 16 5 4 38 38 H 1.08996 * 110.72884 * 56.59886 * 20 18 17 39 39 H 1.09005 * 110.30244 * 334.35200 * 21 20 18 40 40 H 1.08996 * 110.30810 * 96.50542 * 21 20 18 41 41 H 1.07997 * 119.89588 * 0.03065 * 23 22 21 42 42 H 1.07995 * 120.03490 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.02732 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.88805 * 180.02562 * 26 25 24 45 45 H 1.09006 * 110.30124 * 223.89212 * 28 27 22 46 46 H 1.09000 * 110.30433 * 101.74375 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 6 3.2901 -1.5101 0.6953 6 1 4.1667 -0.8630 0.6648 7 7 3.5572 -2.7145 1.4855 8 6 4.8216 -3.2386 1.5286 9 1 5.6219 -2.7639 0.9803 10 6 5.0746 -4.3801 2.2768 11 7 4.0994 -4.9583 2.9454 12 14 6.7995 -5.0947 2.3361 13 1 7.7081 -4.2642 1.5055 14 1 7.2829 -5.1053 3.7401 15 1 6.7784 -6.4829 1.8093 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8116 -0.3625 -2.4652 19 8 1.1461 0.6193 -2.7188 20 6 2.3907 -1.1898 -3.5837 21 6 3.9309 -1.0911 -3.5986 22 6 4.3159 -1.1261 -5.0621 23 6 5.5369 -1.3842 -5.6629 24 6 5.6533 -1.3603 -7.0388 25 6 4.5481 -1.0773 -7.8198 26 6 3.3298 -0.8196 -7.2226 27 6 3.2110 -0.8438 -5.8429 28 6 2.0076 -0.6004 -4.9576 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 2.3504 -0.0432 2.0211 33 1 1.3050 -1.4434 1.6204 34 1 2.8385 -3.1406 1.9782 35 1 4.2761 -5.7562 3.4679 36 1 3.6778 -2.0299 -1.3885 37 1 2.1972 -2.7715 -0.7109 38 1 2.0667 -2.2275 -3.5037 39 1 4.2542 -0.1542 -3.1448 40 1 4.3694 -1.9385 -3.0718 41 1 6.4007 -1.6050 -5.0535 42 1 6.6068 -1.5615 -7.5042 43 1 4.6375 -1.0577 -8.8960 44 1 2.4669 -0.5990 -7.8334 45 1 1.1330 -1.1126 -5.3589 46 1 1.8132 0.4685 -4.8691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989479025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:05 Heat of formation + Delta-G solvation = -16.285745 kcal Electronic energy + Delta-G solvation = -26137.350742 eV Core-core repulsion = 22604.754960 eV Total energy + Delta-G solvation = -3532.595782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80632 -40.53625 -38.80356 -36.45064 -35.96867 -33.29490 -32.90752 -32.29631 -30.21114 -29.93598 -28.28017 -26.74607 -25.89745 -24.84137 -22.83706 -21.94387 -21.90735 -21.52912 -19.82155 -19.24468 -18.22807 -17.59576 -17.13069 -16.74612 -16.60603 -15.91018 -15.86516 -15.48291 -15.23042 -14.84037 -14.80275 -14.38914 -14.13502 -14.03704 -13.95504 -13.78230 -13.60049 -13.40726 -13.23780 -13.05204 -12.88248 -12.78481 -12.37597 -12.21010 -12.17518 -12.12808 -12.04126 -12.01021 -11.73916 -11.63654 -11.46958 -11.01689 -10.79957 -9.72948 -9.66280 -9.44298 -9.03931 -7.93547 -5.23174 0.42346 0.47352 1.50722 1.52159 1.54052 1.60947 1.93312 2.57902 2.83401 3.24784 3.33218 3.38607 3.60344 3.84916 3.86719 3.98196 4.00431 4.08994 4.16157 4.17880 4.25328 4.29519 4.31679 4.47193 4.51944 4.58035 4.65075 4.66015 4.73827 4.76843 4.84383 4.85378 4.92705 5.01768 5.08144 5.13963 5.16740 5.22492 5.24260 5.38769 5.43448 5.54784 5.56709 5.61531 5.71378 6.11145 6.27560 6.52800 7.10250 7.35640 8.06743 8.30913 9.29501 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.003970 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.819356 B = 7051.508706 C = 9316.096675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.166 3.834 6 H 0.067 0.933 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.081 0.919 10 C -0.068 4.068 11 N -0.966 5.966 12 Si 0.966 3.034 13 H -0.264 1.264 14 H -0.297 1.297 15 H -0.296 1.296 16 C 0.082 3.918 17 N -0.605 5.605 18 C 0.538 3.462 19 O -0.573 6.573 20 C -0.103 4.103 21 C -0.066 4.066 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.108 4.108 28 C -0.061 4.061 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.137 0.863 45 H 0.088 0.912 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 8.930 -17.769 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.093 0.907 4 C -0.165 4.165 5 C 0.055 3.945 6 H 0.085 0.915 7 N -0.361 5.361 8 C -0.372 4.372 9 H 0.099 0.901 10 C -0.261 4.261 11 N -0.617 5.617 12 Si 0.796 3.204 13 H -0.189 1.189 14 H -0.224 1.224 15 H -0.223 1.223 16 C -0.044 4.044 17 N -0.337 5.337 18 C 0.327 3.673 19 O -0.453 6.453 20 C -0.124 4.124 21 C -0.104 4.104 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.108 4.108 28 C -0.098 4.098 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.148 0.852 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.155 0.845 45 H 0.107 0.893 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.048 9.447 -17.975 20.409 hybrid contribution 0.497 -0.897 0.661 1.220 sum -1.552 8.550 -17.314 19.372 Atomic orbital electron populations 1.22048 0.94191 1.01993 1.02789 1.21579 0.94977 0.96013 0.84106 0.90690 1.22948 0.97694 0.99510 0.96330 1.21437 0.95919 0.88046 0.89079 0.91516 1.42436 1.08427 1.29118 1.56099 1.19663 0.87922 1.06244 1.23386 0.90146 1.25477 1.00777 0.99332 1.00509 1.69805 1.32560 1.22787 1.36506 0.85179 0.80391 0.77892 0.76929 1.18851 1.22435 1.22326 1.23272 0.94847 0.87489 0.98761 1.48594 1.51587 1.28695 1.04842 1.20284 0.79656 0.84666 0.82689 1.90631 1.41877 1.29192 1.83650 1.21918 0.96601 1.00721 0.93154 1.20946 0.92741 1.03148 0.93526 1.20622 0.94545 1.00775 0.95287 1.20902 0.96554 1.00445 0.95667 1.21381 0.99992 0.99854 0.93063 1.21399 0.92178 0.99234 1.01157 1.20902 0.99053 1.00587 0.92870 1.20705 0.95672 1.00105 0.94330 1.20849 0.96125 1.02193 0.90654 0.89859 0.92876 0.92957 0.89139 0.90662 0.79045 0.94046 0.90086 0.92270 0.86825 0.90578 0.89236 0.85234 0.83568 0.83278 0.84539 0.89313 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.11 71.98 0.66 -3.26 16 2 C 0.14 3.79 3.45 45.34 0.16 3.95 16 3 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.13 -3.69 6.12 31.79 0.19 -3.49 16 5 C 0.17 5.82 3.71 46.38 0.17 5.99 16 6 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 7 N -0.72 -32.87 5.24 -316.36 -1.66 -34.53 16 8 C -0.24 -12.23 9.96 84.03 0.84 -11.40 16 9 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 10 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 11 N -0.97 -56.11 13.06 21.65 0.28 -55.82 16 12 Si 0.97 43.71 29.55 68.60 2.03 45.74 16 13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 15 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 16 C 0.08 2.57 6.33 86.85 0.55 3.12 16 17 N -0.60 -17.74 3.07 -788.06 -2.42 -20.15 16 18 C 0.54 16.05 6.89 87.66 0.60 16.66 16 19 O -0.57 -19.93 14.55 -3.05 -0.04 -19.98 16 20 C -0.10 -2.58 2.83 -10.63 -0.03 -2.61 16 21 C -0.07 -1.61 5.31 30.52 0.16 -1.45 16 22 C -0.11 -2.66 6.14 -19.59 -0.12 -2.78 16 23 C -0.12 -2.47 10.04 22.30 0.22 -2.25 16 24 C -0.13 -2.18 10.05 22.24 0.22 -1.96 16 25 C -0.12 -2.02 10.05 22.24 0.22 -1.80 16 26 C -0.12 -2.22 10.04 22.30 0.22 -2.00 16 27 C -0.11 -2.48 6.14 -19.60 -0.12 -2.60 16 28 C -0.06 -1.44 6.10 30.51 0.19 -1.25 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.51 6.90 -2.39 -0.02 1.50 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.27 7.72 -2.39 -0.02 2.25 16 34 H 0.38 18.63 7.77 -92.71 -0.72 17.91 16 35 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.08 2.43 5.31 -2.39 -0.01 2.42 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.08 1.94 7.89 -2.38 -0.02 1.92 16 40 H 0.09 2.13 6.63 -2.39 -0.02 2.11 16 41 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.08 2.23 6.98 -2.39 -0.02 2.21 16 Total: -1.00 -62.56 367.21 3.06 -59.51 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.26 Total: 35.56 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 4.61 Total: -10.32 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -3.79 Total: -110.51 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.04 Total: -19.98 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -62.56 3.06 -59.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989479025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.220 kcal (2) G-P(sol) polarization free energy of solvation -62.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds