Wall clock time and date at job start Tue Mar 31 2020 12:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.99989 * 2 1 4 4 C 1.54329 * 109.77790 * 121.16930 * 2 1 3 5 5 C 1.55158 * 103.02379 * 97.49323 * 4 2 1 6 6 H 1.08994 * 111.00496 * 277.23135 * 5 4 2 7 7 N 1.46497 * 111.03649 * 153.39477 * 5 4 2 8 8 C 1.36936 * 119.99894 * 161.33571 * 7 5 4 9 9 H 1.08000 * 120.00284 * 359.97438 * 8 7 5 10 10 C 1.38817 * 120.00165 * 180.02562 * 8 7 5 11 11 N 1.31611 * 120.00344 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99735 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46787 * 90.00383 * 12 10 8 14 14 H 1.48502 * 109.47042 * 209.99733 * 12 10 8 15 15 H 1.48493 * 109.47283 * 330.00192 * 12 10 8 16 16 C 1.54907 * 101.57956 * 35.30878 * 5 4 2 17 17 N 1.47027 * 109.88026 * 238.90811 * 2 1 3 18 18 C 1.34777 * 125.65108 * 59.56076 * 17 2 1 19 19 O 1.21280 * 119.99732 * 359.71934 * 18 17 2 20 20 C 1.50699 * 119.99716 * 179.71871 * 18 17 2 21 21 C 1.54349 * 110.81846 * 180.02562 * 20 18 17 22 22 C 1.51368 * 105.25468 * 144.61792 * 21 20 18 23 23 C 1.38499 * 130.38934 * 162.80146 * 22 21 20 24 24 C 1.38105 * 120.21535 * 179.97438 * 23 22 21 25 25 C 1.38255 * 119.93497 * 359.97438 * 24 23 22 26 26 C 1.38101 * 119.93270 * 0.02562 * 25 24 23 27 27 C 1.38207 * 109.76303 * 342.76190 * 22 21 20 28 28 C 1.51372 * 109.75868 * 359.97438 * 27 22 21 29 29 H 1.08998 * 109.47066 * 179.63679 * 1 2 3 30 30 H 1.08995 * 109.47055 * 299.64322 * 1 2 3 31 31 H 1.09005 * 109.47151 * 59.63856 * 1 2 3 32 32 H 1.09000 * 110.84993 * 339.02761 * 4 2 1 33 33 H 1.09006 * 110.66708 * 215.87730 * 4 2 1 34 34 H 0.96998 * 120.00467 * 341.32941 * 7 5 4 35 35 H 0.97003 * 120.00559 * 179.97438 * 11 10 8 36 36 H 1.09001 * 110.36903 * 204.15114 * 16 5 4 37 37 H 1.09004 * 110.37008 * 81.82649 * 16 5 4 38 38 H 1.08998 * 110.88858 * 56.48124 * 20 18 17 39 39 H 1.09002 * 110.30534 * 25.64283 * 21 20 18 40 40 H 1.08997 * 110.29932 * 263.58858 * 21 20 18 41 41 H 1.08004 * 119.89819 * 359.93717 * 23 22 21 42 42 H 1.08004 * 120.03423 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.03290 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.89097 * 180.02562 * 26 25 24 45 45 H 1.09005 * 110.30436 * 136.11303 * 28 27 22 46 46 H 1.09000 * 110.30327 * 258.16830 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7516 1.2426 5 6 2.3560 -2.1698 0.6914 6 1 1.4521 -2.7779 0.6578 7 7 3.3995 -2.8285 1.4809 8 6 3.5499 -4.1881 1.4183 9 1 2.8989 -4.7750 0.7871 10 6 4.5383 -4.8124 2.1668 11 7 4.6825 -6.1192 2.1070 12 14 5.6638 -3.7975 3.2590 13 1 5.0634 -3.6766 4.6118 14 1 6.9865 -4.4646 3.3624 15 1 5.8362 -2.4449 2.6711 16 6 2.8612 -1.8466 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7753 -0.3844 -2.4658 19 8 1.0747 0.5729 -2.7180 20 6 2.3612 -1.2053 -3.5855 21 6 1.9364 -0.6426 -4.9586 22 6 3.1301 -0.8585 -5.8640 23 6 3.2221 -0.8465 -7.2459 24 6 4.4365 -1.0723 -7.8636 25 6 5.5648 -1.3105 -7.1008 26 6 5.4750 -1.3229 -5.7228 27 6 4.2579 -1.0969 -5.1016 28 6 3.8996 -1.0569 -3.6314 29 1 -0.3633 -1.0276 -0.0065 30 1 -0.3633 0.5083 0.8931 31 1 -0.3634 0.5195 -0.8868 32 1 1.2884 -0.7952 2.0191 33 1 2.9600 -0.2829 1.6225 34 1 3.9840 -2.3016 2.0480 35 1 5.3735 -6.5554 2.6298 36 1 2.7177 -2.7049 -1.3934 37 1 3.9123 -1.5589 -0.7115 38 1 2.0751 -2.2528 -3.4903 39 1 1.7102 0.4206 -4.8781 40 1 1.0707 -1.1852 -5.3382 41 1 2.3412 -0.6607 -7.8425 42 1 4.5049 -1.0627 -8.9414 43 1 6.5152 -1.4877 -7.5822 44 1 6.3568 -1.5087 -5.1276 45 1 4.3745 -1.8840 -3.1037 46 1 4.2032 -0.1058 -3.1939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989479027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:10 Heat of formation + Delta-G solvation = 2.268795 kcal Electronic energy + Delta-G solvation = -26167.777422 eV Core-core repulsion = 22635.986225 eV Total energy + Delta-G solvation = -3531.791197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74810 -39.55847 -37.62701 -35.48095 -34.37146 -31.95907 -31.53330 -31.44427 -29.21482 -28.82445 -27.35572 -25.60643 -24.33803 -23.36712 -21.86264 -21.07050 -20.82628 -20.19694 -18.73344 -17.79058 -17.11017 -16.37644 -16.10057 -15.64517 -15.37538 -15.01355 -14.45745 -14.07666 -13.91757 -13.68398 -13.41326 -13.26737 -13.20556 -13.01593 -12.83875 -12.79381 -12.59068 -12.33172 -11.99460 -11.93575 -11.56394 -11.35687 -11.26135 -11.22810 -11.10694 -10.91167 -10.84409 -10.68042 -10.41991 -10.10176 -9.71891 -9.64623 -9.09646 -8.91427 -8.60194 -8.45747 -7.45028 -5.89360 -3.27851 1.24116 1.28015 2.71358 3.08082 3.28720 3.31711 3.38204 3.64413 4.21948 4.32498 4.47671 4.63767 4.86009 4.88265 4.93749 4.95780 4.99328 5.08933 5.10446 5.25525 5.27684 5.40239 5.47015 5.50041 5.51677 5.62713 5.67472 5.71641 5.73169 5.75942 5.83889 5.95015 5.99010 6.02734 6.07631 6.08122 6.14883 6.30922 6.32381 6.38910 6.39780 6.54217 6.56285 6.69560 6.88851 7.70733 7.84529 8.27858 8.29578 9.05619 9.77743 9.95594 11.28166 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003808 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.423795 B = 7351.088552 C = 9092.176670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.141 4.141 5 C 0.179 3.821 6 H 0.073 0.927 7 N -0.737 5.737 8 C -0.255 4.255 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.073 3.927 17 N -0.607 5.607 18 C 0.539 3.461 19 O -0.548 6.548 20 C -0.106 4.106 21 C -0.067 4.067 22 C -0.092 4.092 23 C -0.109 4.109 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.104 4.104 27 C -0.093 4.093 28 C -0.071 4.071 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.364 0.636 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.089 0.911 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.830 12.239 -14.210 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.088 0.912 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.091 0.909 7 N -0.378 5.378 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.052 4.052 17 N -0.341 5.341 18 C 0.328 3.672 19 O -0.427 6.427 20 C -0.127 4.127 21 C -0.104 4.104 22 C -0.092 4.092 23 C -0.127 4.127 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.122 4.122 27 C -0.093 4.093 28 C -0.108 4.108 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.198 0.802 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.228 12.477 -14.428 19.346 hybrid contribution 1.089 0.434 0.772 1.404 sum -2.139 12.912 -13.655 18.914 Atomic orbital electron populations 1.22137 0.94871 1.02432 1.02508 1.21476 0.94560 0.95842 0.84555 0.91182 1.23025 1.01748 0.96889 0.96266 1.21242 0.92495 0.91116 0.88453 0.90923 1.42664 1.37752 1.05315 1.52095 1.19054 1.14665 0.81195 1.23498 0.88998 1.24677 0.98862 0.95345 0.99676 1.69691 1.35779 1.07475 1.44520 0.86583 0.81055 0.79697 0.81347 1.20933 1.21622 1.20253 1.23465 0.94803 0.87423 0.99539 1.48599 1.50050 1.30884 1.04520 1.19905 0.80417 0.84557 0.82353 1.90641 1.39317 1.29343 1.83370 1.21971 0.96205 1.00991 0.93552 1.20933 0.95436 1.03274 0.90760 1.20615 0.95903 0.99149 0.93567 1.20601 0.97922 1.01008 0.93144 1.21020 0.92660 1.00652 0.99673 1.21026 0.98594 1.00878 0.93594 1.20658 0.96751 1.00251 0.94560 1.20533 0.93677 0.99544 0.95559 1.21032 0.93389 1.03507 0.92861 0.92310 0.91976 0.91372 0.89852 0.90816 0.80219 0.92855 0.90764 0.91173 0.87384 0.88347 0.90323 0.86267 0.86022 0.85955 0.86061 0.89295 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.05 37.16 0.34 -1.73 16 2 C 0.14 1.90 3.51 -66.95 -0.23 1.66 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -1.96 6.11 -24.89 -0.15 -2.11 16 5 C 0.18 3.05 3.69 -65.78 -0.24 2.81 16 6 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 7 N -0.74 -15.72 5.08 -51.35 -0.26 -15.98 16 8 C -0.25 -6.63 10.47 -15.06 -0.16 -6.79 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 11 N -0.93 -27.78 13.97 55.49 0.78 -27.01 16 12 Si 0.88 20.82 27.74 -169.99 -4.71 16.11 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 16 C 0.07 1.13 5.54 -2.53 -0.01 1.12 16 17 N -0.61 -8.76 3.08 -163.00 -0.50 -9.26 16 18 C 0.54 7.94 6.89 -10.99 -0.08 7.86 16 19 O -0.55 -9.34 14.39 5.56 0.08 -9.26 16 20 C -0.11 -1.33 2.72 -90.21 -0.25 -1.58 16 21 C -0.07 -0.80 6.09 -26.85 -0.16 -0.96 16 22 C -0.09 -1.10 6.14 -104.21 -0.64 -1.74 16 23 C -0.11 -1.15 10.04 -39.53 -0.40 -1.54 16 24 C -0.12 -1.18 10.05 -39.62 -0.40 -1.58 16 25 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 26 C -0.10 -1.16 10.04 -39.54 -0.40 -1.56 16 27 C -0.09 -1.14 6.14 -104.21 -0.64 -1.78 16 28 C -0.07 -0.86 5.63 -26.70 -0.15 -1.01 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.97 6.74 -51.93 -0.35 0.62 16 32 H 0.08 1.07 7.83 -51.93 -0.41 0.67 16 33 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 34 H 0.36 7.67 5.57 -40.82 -0.23 7.44 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 1.15 7.40 -51.93 -0.38 0.76 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 1.30 7.74 -51.93 -0.40 0.89 16 39 H 0.10 1.29 6.99 -51.93 -0.36 0.93 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.09 1.07 7.89 -51.93 -0.41 0.66 16 46 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -30.51 366.12 -10.36 -40.86 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.19 Total: 9.35 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.06 Total: -10.33 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.01 Total: -52.25 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.51 -10.36 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989479027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.133 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds