Wall clock time and date at job start Tue Mar 31 2020 12:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.99989 * 2 1 4 4 C 1.54329 * 109.77790 * 121.16930 * 2 1 3 5 5 C 1.55158 * 103.02379 * 97.49323 * 4 2 1 6 6 H 1.08994 * 111.00496 * 277.23135 * 5 4 2 7 7 N 1.46497 * 111.03649 * 153.39477 * 5 4 2 8 8 C 1.36936 * 119.99894 * 161.33571 * 7 5 4 9 9 H 1.08000 * 120.00284 * 359.97438 * 8 7 5 10 10 C 1.38817 * 120.00165 * 180.02562 * 8 7 5 11 11 N 1.31611 * 120.00344 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99735 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46787 * 90.00383 * 12 10 8 14 14 H 1.48502 * 109.47042 * 209.99733 * 12 10 8 15 15 H 1.48493 * 109.47283 * 330.00192 * 12 10 8 16 16 C 1.54907 * 101.57956 * 35.30878 * 5 4 2 17 17 N 1.47027 * 109.88026 * 238.90811 * 2 1 3 18 18 C 1.34777 * 125.65108 * 59.56076 * 17 2 1 19 19 O 1.21280 * 119.99732 * 359.71934 * 18 17 2 20 20 C 1.50699 * 119.99716 * 179.71871 * 18 17 2 21 21 C 1.54349 * 110.81846 * 180.02562 * 20 18 17 22 22 C 1.51368 * 105.25468 * 144.61792 * 21 20 18 23 23 C 1.38499 * 130.38934 * 162.80146 * 22 21 20 24 24 C 1.38105 * 120.21535 * 179.97438 * 23 22 21 25 25 C 1.38255 * 119.93497 * 359.97438 * 24 23 22 26 26 C 1.38101 * 119.93270 * 0.02562 * 25 24 23 27 27 C 1.38207 * 109.76303 * 342.76190 * 22 21 20 28 28 C 1.51372 * 109.75868 * 359.97438 * 27 22 21 29 29 H 1.08998 * 109.47066 * 179.63679 * 1 2 3 30 30 H 1.08995 * 109.47055 * 299.64322 * 1 2 3 31 31 H 1.09005 * 109.47151 * 59.63856 * 1 2 3 32 32 H 1.09000 * 110.84993 * 339.02761 * 4 2 1 33 33 H 1.09006 * 110.66708 * 215.87730 * 4 2 1 34 34 H 0.96998 * 120.00467 * 341.32941 * 7 5 4 35 35 H 0.97003 * 120.00559 * 179.97438 * 11 10 8 36 36 H 1.09001 * 110.36903 * 204.15114 * 16 5 4 37 37 H 1.09004 * 110.37008 * 81.82649 * 16 5 4 38 38 H 1.08998 * 110.88858 * 56.48124 * 20 18 17 39 39 H 1.09002 * 110.30534 * 25.64283 * 21 20 18 40 40 H 1.08997 * 110.29932 * 263.58858 * 21 20 18 41 41 H 1.08004 * 119.89819 * 359.93717 * 23 22 21 42 42 H 1.08004 * 120.03423 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.03290 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.89097 * 180.02562 * 26 25 24 45 45 H 1.09005 * 110.30436 * 136.11303 * 28 27 22 46 46 H 1.09000 * 110.30327 * 258.16830 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7516 1.2426 5 6 2.3560 -2.1698 0.6914 6 1 1.4521 -2.7779 0.6578 7 7 3.3995 -2.8285 1.4809 8 6 3.5499 -4.1881 1.4183 9 1 2.8989 -4.7750 0.7871 10 6 4.5383 -4.8124 2.1668 11 7 4.6825 -6.1192 2.1070 12 14 5.6638 -3.7975 3.2590 13 1 5.0634 -3.6766 4.6118 14 1 6.9865 -4.4646 3.3624 15 1 5.8362 -2.4449 2.6711 16 6 2.8612 -1.8466 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7753 -0.3844 -2.4658 19 8 1.0747 0.5729 -2.7180 20 6 2.3612 -1.2053 -3.5855 21 6 1.9364 -0.6426 -4.9586 22 6 3.1301 -0.8585 -5.8640 23 6 3.2221 -0.8465 -7.2459 24 6 4.4365 -1.0723 -7.8636 25 6 5.5648 -1.3105 -7.1008 26 6 5.4750 -1.3229 -5.7228 27 6 4.2579 -1.0969 -5.1016 28 6 3.8996 -1.0569 -3.6314 29 1 -0.3633 -1.0276 -0.0065 30 1 -0.3633 0.5083 0.8931 31 1 -0.3634 0.5195 -0.8868 32 1 1.2884 -0.7952 2.0191 33 1 2.9600 -0.2829 1.6225 34 1 3.9840 -2.3016 2.0480 35 1 5.3735 -6.5554 2.6298 36 1 2.7177 -2.7049 -1.3934 37 1 3.9123 -1.5589 -0.7115 38 1 2.0751 -2.2528 -3.4903 39 1 1.7102 0.4206 -4.8781 40 1 1.0707 -1.1852 -5.3382 41 1 2.3412 -0.6607 -7.8425 42 1 4.5049 -1.0627 -8.9414 43 1 6.5152 -1.4877 -7.5822 44 1 6.3568 -1.5087 -5.1276 45 1 4.3745 -1.8840 -3.1037 46 1 4.2032 -0.1058 -3.1939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989479027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:09 Heat of formation + Delta-G solvation = -13.923032 kcal Electronic energy + Delta-G solvation = -26168.479553 eV Core-core repulsion = 22635.986225 eV Total energy + Delta-G solvation = -3532.493327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80823 -40.57957 -38.87660 -36.44647 -36.06557 -33.52682 -32.94415 -32.31081 -30.43561 -30.06518 -28.26084 -26.78249 -25.75902 -24.78854 -22.93799 -22.01067 -21.92667 -21.43552 -19.97808 -19.61122 -18.27802 -17.35223 -17.19566 -16.86110 -16.53828 -16.04476 -15.87228 -15.38811 -15.31898 -14.86040 -14.68553 -14.51237 -14.26148 -14.15405 -14.00377 -13.86743 -13.74974 -13.35630 -13.33127 -13.13685 -13.06780 -12.82292 -12.37803 -12.23733 -12.17007 -12.12069 -12.03207 -11.91571 -11.79835 -11.68940 -11.47534 -11.05166 -10.79658 -9.73673 -9.71547 -9.45175 -9.33004 -8.00076 -5.35804 0.41538 0.46442 1.42252 1.45027 1.51877 1.53194 1.91406 2.51001 2.82515 3.19311 3.29158 3.31160 3.54165 3.72701 3.82974 3.88862 3.99644 4.05369 4.08195 4.16251 4.24883 4.28656 4.34713 4.41952 4.46535 4.60263 4.64196 4.67953 4.70115 4.76269 4.84055 4.85306 4.90358 5.00619 5.01731 5.13148 5.15237 5.21542 5.23409 5.33425 5.46757 5.53712 5.60614 5.70415 5.79417 6.10293 6.23017 6.49537 7.07366 7.10554 7.82218 8.01502 9.20742 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003808 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.423795 B = 7351.088552 C = 9092.176670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 H 0.077 0.923 4 C -0.127 4.127 5 C 0.169 3.831 6 H 0.062 0.938 7 N -0.737 5.737 8 C -0.233 4.233 9 H 0.061 0.939 10 C -0.058 4.058 11 N -0.981 5.981 12 Si 0.950 3.050 13 H -0.280 1.280 14 H -0.301 1.301 15 H -0.247 1.247 16 C 0.086 3.914 17 N -0.606 5.606 18 C 0.539 3.461 19 O -0.571 6.571 20 C -0.105 4.105 21 C -0.061 4.061 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.118 4.118 27 C -0.113 4.113 28 C -0.064 4.064 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.370 0.630 35 H 0.257 0.743 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.137 0.863 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 14.142 -14.812 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.095 0.905 4 C -0.165 4.165 5 C 0.059 3.941 6 H 0.080 0.920 7 N -0.380 5.380 8 C -0.363 4.363 9 H 0.079 0.921 10 C -0.250 4.250 11 N -0.631 5.631 12 Si 0.778 3.222 13 H -0.206 1.206 14 H -0.228 1.228 15 H -0.171 1.171 16 C -0.040 4.040 17 N -0.339 5.339 18 C 0.329 3.671 19 O -0.451 6.451 20 C -0.126 4.126 21 C -0.098 4.098 22 C -0.108 4.108 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.113 4.113 28 C -0.101 4.101 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.204 0.796 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.147 0.853 45 H 0.104 0.896 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.842 14.444 -15.048 21.051 hybrid contribution 0.869 -0.151 0.843 1.220 sum -1.973 14.293 -14.205 20.247 Atomic orbital electron populations 1.22079 0.94122 1.02143 1.02917 1.21598 0.95160 0.95995 0.83934 0.90505 1.22960 1.02750 0.94181 0.96640 1.21381 0.90965 0.92611 0.89097 0.91962 1.42578 1.38873 1.03620 1.52935 1.18997 1.12909 0.83112 1.21320 0.92126 1.25453 1.01142 0.96347 1.02010 1.69873 1.37103 1.09674 1.46481 0.85486 0.78100 0.79259 0.79368 1.20601 1.22777 1.17147 1.23151 0.94782 0.87713 0.98321 1.48599 1.49823 1.30519 1.04915 1.20207 0.79919 0.84321 0.82666 1.90631 1.40378 1.30432 1.83656 1.21973 0.96532 1.00808 0.93251 1.20846 0.96070 1.02402 0.90494 1.20713 0.95581 1.00190 0.94358 1.20908 0.99186 1.00577 0.92748 1.21402 0.92070 0.99329 1.01176 1.21381 0.99892 0.99872 0.93161 1.20900 0.96700 1.00503 0.95519 1.20631 0.94463 1.00859 0.95373 1.20937 0.92875 1.02991 0.93346 0.92875 0.89639 0.92912 0.88249 0.89818 0.79621 0.93374 0.91184 0.91189 0.86948 0.89746 0.89395 0.84516 0.83258 0.83562 0.85268 0.89570 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.05 71.98 0.65 -3.03 16 2 C 0.14 3.45 3.51 45.34 0.16 3.61 16 3 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.13 -3.21 6.11 31.79 0.19 -3.02 16 5 C 0.17 5.59 3.69 46.38 0.17 5.76 16 6 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 7 N -0.74 -30.52 5.08 -316.39 -1.61 -32.13 16 8 C -0.23 -12.18 10.47 84.03 0.88 -11.30 16 9 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 10 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 11 N -0.98 -60.28 13.97 21.65 0.30 -59.98 16 12 Si 0.95 42.60 27.74 68.60 1.90 44.50 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 15 H -0.25 -9.75 6.52 99.48 0.65 -9.10 16 16 C 0.09 2.59 5.54 86.85 0.48 3.07 16 17 N -0.61 -16.90 3.08 -788.01 -2.43 -19.33 16 18 C 0.54 15.67 6.89 87.66 0.60 16.27 16 19 O -0.57 -19.28 14.39 -3.03 -0.04 -19.33 16 20 C -0.10 -2.62 2.72 -10.53 -0.03 -2.65 16 21 C -0.06 -1.44 6.09 30.52 0.19 -1.25 16 22 C -0.11 -2.51 6.14 -19.60 -0.12 -2.63 16 23 C -0.12 -2.26 10.04 22.30 0.22 -2.03 16 24 C -0.12 -2.06 10.05 22.24 0.22 -1.84 16 25 C -0.13 -2.23 10.05 22.24 0.22 -2.00 16 26 C -0.12 -2.52 10.04 22.30 0.22 -2.29 16 27 C -0.11 -2.71 6.14 -19.60 -0.12 -2.83 16 28 C -0.06 -1.56 5.63 30.62 0.17 -1.38 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.44 6.74 -2.38 -0.02 1.42 16 32 H 0.10 2.23 7.83 -2.39 -0.02 2.22 16 33 H 0.08 2.00 8.00 -2.38 -0.02 1.99 16 34 H 0.37 14.59 5.57 -92.71 -0.52 14.08 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.07 2.16 7.40 -2.39 -0.02 2.15 16 37 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.11 2.69 7.74 -2.39 -0.02 2.67 16 39 H 0.08 2.23 6.99 -2.39 -0.02 2.21 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.09 2.08 7.89 -2.38 -0.02 2.06 16 46 H 0.08 1.91 7.90 -2.39 -0.02 1.89 16 Total: -1.00 -66.30 366.12 3.12 -63.19 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.40 Total: 33.36 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.59 Total: -10.29 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.73 Total: -111.43 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.04 Total: -19.33 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.90 Total: 44.50 kcal Total: -66.30 3.12 -63.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989479027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.264 kcal (2) G-P(sol) polarization free energy of solvation -66.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds