Wall clock time and date at job start Tue Mar 31 2020 12:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.32625 * 2 1 4 4 C 1.54913 * 110.36299 * 237.64778 * 2 1 3 5 5 C 1.55162 * 101.57555 * 204.15212 * 4 2 1 6 6 H 1.08997 * 110.71877 * 276.95715 * 5 4 2 7 7 N 1.46505 * 110.71813 * 153.86871 * 5 4 2 8 8 C 1.36929 * 119.99942 * 154.99951 * 7 5 4 9 9 H 1.08000 * 120.00363 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99876 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99969 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47234 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46946 * 120.00573 * 12 10 8 15 15 H 1.48502 * 109.47342 * 240.00282 * 12 10 8 16 16 C 1.54335 * 103.02038 * 35.30728 * 5 4 2 17 17 N 1.47020 * 107.26582 * 338.13912 * 16 5 4 18 18 C 1.34775 * 125.64530 * 178.85312 * 17 16 5 19 19 O 1.21281 * 119.99857 * 179.69294 * 18 17 16 20 20 C 1.50706 * 120.00187 * 359.68613 * 18 17 16 21 21 C 1.54346 * 110.82328 * 295.89841 * 20 18 17 22 22 C 1.51676 * 105.01763 * 215.56502 * 21 20 18 23 23 C 1.38500 * 130.30799 * 197.10047 * 22 21 20 24 24 C 1.38102 * 120.21423 * 179.80911 * 23 22 21 25 25 C 1.38256 * 119.93585 * 359.97438 * 24 23 22 26 26 C 1.38102 * 119.93197 * 0.02562 * 25 24 23 27 27 C 1.38216 * 109.83839 * 16.92092 * 22 21 20 28 28 C 1.51366 * 109.76007 * 0.15873 * 27 22 21 29 29 H 1.09002 * 109.47210 * 299.21788 * 1 2 3 30 30 H 1.09009 * 109.47149 * 59.21648 * 1 2 3 31 31 H 1.08994 * 109.47144 * 179.21213 * 1 2 3 32 32 H 1.08995 * 111.00297 * 322.22523 * 4 2 1 33 33 H 1.09002 * 111.00475 * 86.08479 * 4 2 1 34 34 H 0.97004 * 119.99772 * 334.99105 * 7 5 4 35 35 H 0.96997 * 119.99510 * 179.97438 * 11 10 8 36 36 H 1.09007 * 109.98818 * 218.66022 * 16 5 4 37 37 H 1.08999 * 109.77563 * 97.50152 * 16 5 4 38 38 H 1.09002 * 110.72405 * 59.30108 * 20 18 17 39 39 H 1.08998 * 110.30425 * 334.34972 * 21 20 18 40 40 H 1.08998 * 110.30056 * 96.50050 * 21 20 18 41 41 H 1.07994 * 119.89024 * 359.80218 * 23 22 21 42 42 H 1.08000 * 120.03318 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.03407 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.88992 * 180.02562 * 26 25 24 45 45 H 1.09002 * 110.29916 * 223.88862 * 28 27 22 46 46 H 1.08996 * 110.38954 * 101.78071 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7772 -1.2269 5 6 3.4777 -1.2005 -0.7329 6 1 4.1951 -0.3922 -0.8747 7 7 3.9250 -2.4144 -1.4206 8 6 5.2630 -2.6779 -1.5438 9 1 5.9887 -1.9908 -1.1344 10 6 5.6867 -3.8283 -2.1949 11 7 4.8023 -4.6655 -2.6943 12 14 7.5121 -4.1875 -2.3636 13 1 8.2922 -3.0987 -1.7225 14 1 7.8260 -5.4781 -1.6994 15 1 7.8692 -4.2717 -3.8026 16 6 3.2524 -1.4717 0.7696 17 7 2.0430 -0.7372 1.1690 18 6 1.4972 -0.7338 2.4013 19 8 0.4967 -0.0840 2.6195 20 6 2.1301 -1.5375 3.5080 21 6 2.0744 -3.0470 3.1907 22 6 1.8574 -3.7226 4.5313 23 6 2.0376 -5.0429 4.9088 24 6 1.7761 -5.4365 6.2064 25 6 1.3334 -4.5103 7.1325 26 6 1.1531 -3.1934 6.7579 27 6 1.4144 -2.7966 5.4569 28 6 1.2986 -1.4358 4.8043 29 1 -0.3634 0.5016 0.8969 30 1 -0.3634 0.5260 -0.8829 31 1 -0.3633 -1.0275 -0.0141 32 1 1.4510 -1.6495 -1.4392 33 1 2.1399 -0.1285 -2.1000 34 1 3.2732 -3.0314 -1.7886 35 1 5.0985 -5.4691 -3.1496 36 1 4.1081 -1.1176 1.3446 37 1 3.1090 -2.5396 0.9342 38 1 3.1571 -1.2153 3.6799 39 1 1.2423 -3.2622 2.5205 40 1 3.0139 -3.3748 2.7458 41 1 2.3837 -5.7668 4.1861 42 1 1.9181 -6.4668 6.4978 43 1 1.1288 -4.8164 8.1478 44 1 0.8077 -2.4703 7.4820 45 1 1.7100 -0.6667 5.4581 46 1 0.2575 -1.2145 4.5696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989479030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:17 Heat of formation + Delta-G solvation = 0.593594 kcal Electronic energy + Delta-G solvation = -26256.802517 eV Core-core repulsion = 22724.938677 eV Total energy + Delta-G solvation = -3531.863839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70351 -39.47225 -37.45297 -35.45856 -34.21424 -31.86166 -31.41854 -31.38617 -29.12879 -28.42272 -27.31533 -25.41150 -24.23904 -23.50315 -21.79607 -21.07151 -20.70224 -20.27338 -18.52795 -17.41004 -16.97493 -16.33861 -16.04815 -15.71883 -15.30123 -14.90942 -14.50148 -13.92776 -13.78382 -13.72180 -13.35377 -13.26013 -13.16429 -12.95636 -12.79820 -12.62451 -12.31045 -12.09368 -11.90523 -11.74594 -11.32932 -11.27815 -11.18271 -11.16331 -11.04685 -10.86822 -10.77792 -10.68684 -10.31480 -10.06723 -9.80051 -9.39180 -9.04248 -8.86704 -8.55486 -8.33539 -7.14653 -5.89744 -3.20852 1.28771 1.32698 2.77803 3.17064 3.35881 3.42336 3.44177 3.69195 4.27447 4.37594 4.49517 4.74836 4.91680 4.92799 4.99820 5.04520 5.11074 5.15624 5.22300 5.32748 5.44412 5.46548 5.55293 5.55874 5.65645 5.69806 5.72514 5.78796 5.82262 5.87393 6.01116 6.04144 6.09501 6.11812 6.13278 6.20075 6.36928 6.39453 6.43549 6.46037 6.49928 6.60567 6.68802 6.83142 6.93704 7.59235 7.80703 8.27351 8.36611 9.39818 9.93292 10.28152 11.32145 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.004040 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.997364 B = 6929.134586 C = 8975.082476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.067 0.933 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.069 3.931 17 N -0.606 5.606 18 C 0.538 3.462 19 O -0.548 6.548 20 C -0.106 4.106 21 C -0.072 4.072 22 C -0.092 4.092 23 C -0.104 4.104 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.094 4.094 28 C -0.065 4.065 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 4.432 14.833 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.033 3.967 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.059 3.941 6 H 0.085 0.915 7 N -0.352 5.352 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.057 4.057 17 N -0.339 5.339 18 C 0.327 3.673 19 O -0.427 6.427 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.092 4.092 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.127 4.127 27 C -0.094 4.094 28 C -0.102 4.102 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.096 0.904 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.657 4.750 14.969 17.472 hybrid contribution 0.989 -0.676 -0.214 1.217 sum -6.668 4.073 14.755 16.696 Atomic orbital electron populations 1.22161 0.94365 1.02461 1.03056 1.21866 0.94755 0.95312 0.84801 0.91030 1.23179 0.97889 1.00294 0.96268 1.21171 0.93246 0.91099 0.88535 0.91468 1.42387 1.05278 1.22182 1.65356 1.19300 0.83323 1.04489 1.30934 0.90887 1.24764 0.97676 0.97324 1.00627 1.69670 1.32205 1.13366 1.42332 0.86134 0.84821 0.77856 0.77442 1.20441 1.21762 1.21756 1.23427 0.85076 0.96945 1.00258 1.48598 1.28493 1.48135 1.08695 1.19911 0.83734 0.81475 0.82219 1.90594 1.25665 1.44498 1.81977 1.21923 1.01159 0.95591 0.93999 1.21085 1.03753 0.91638 0.94426 1.20625 0.99092 0.93684 0.95756 1.20694 1.00182 0.94918 0.96400 1.21030 1.00232 0.99520 0.93300 1.21009 1.00497 0.93148 0.99453 1.20586 1.01049 0.96147 0.94960 1.20613 0.98912 0.96161 0.93694 1.20916 1.02017 0.93558 0.93756 0.89846 0.92406 0.92855 0.90553 0.90208 0.77858 0.93363 0.92285 0.90490 0.87695 0.89726 0.89124 0.85949 0.85969 0.86073 0.86333 0.90435 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 8.71 37.16 0.32 -1.94 16 2 C 0.14 1.95 3.76 -66.42 -0.25 1.70 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -2.10 6.13 -24.58 -0.15 -2.25 16 5 C 0.17 3.07 3.61 -66.08 -0.24 2.84 16 6 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 7 N -0.71 -16.29 5.15 -51.64 -0.27 -16.56 16 8 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.59 13.06 55.49 0.72 -25.87 16 12 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.07 1.11 5.92 -3.06 -0.02 1.09 16 17 N -0.61 -9.15 3.24 -163.04 -0.53 -9.67 16 18 C 0.54 8.17 6.89 -10.98 -0.08 8.10 16 19 O -0.55 -9.43 13.19 5.56 0.07 -9.36 16 20 C -0.11 -1.37 2.89 -90.36 -0.26 -1.63 16 21 C -0.07 -0.95 5.14 -26.70 -0.14 -1.08 16 22 C -0.09 -1.18 6.15 -104.05 -0.64 -1.82 16 23 C -0.10 -1.25 10.04 -39.53 -0.40 -1.65 16 24 C -0.12 -1.30 10.05 -39.62 -0.40 -1.69 16 25 C -0.12 -1.24 10.05 -39.62 -0.40 -1.64 16 26 C -0.11 -1.19 10.04 -39.53 -0.40 -1.59 16 27 C -0.09 -1.16 6.14 -104.21 -0.64 -1.80 16 28 C -0.07 -0.80 6.09 -26.85 -0.16 -0.96 16 29 H 0.08 1.28 5.89 -51.93 -0.31 0.97 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.24 7.92 -51.93 -0.41 0.82 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.39 9.53 7.76 -40.82 -0.32 9.22 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 37 H 0.08 1.33 6.14 -51.93 -0.32 1.01 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 40 H 0.09 1.21 7.06 -51.93 -0.37 0.84 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 1.32 7.02 -51.93 -0.36 0.95 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -29.24 365.70 -10.71 -39.94 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.11 Total: 10.92 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -4.09 Total: -11.17 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.07 Total: -52.10 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.24 -10.71 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989479030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.539 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds