Wall clock time and date at job start Tue Mar 31 2020 12:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.32625 * 2 1 4 4 C 1.54913 * 110.36299 * 237.64778 * 2 1 3 5 5 C 1.55162 * 101.57555 * 204.15212 * 4 2 1 6 6 H 1.08997 * 110.71877 * 276.95715 * 5 4 2 7 7 N 1.46505 * 110.71813 * 153.86871 * 5 4 2 8 8 C 1.36929 * 119.99942 * 154.99951 * 7 5 4 9 9 H 1.08000 * 120.00363 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99876 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99969 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47234 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46946 * 120.00573 * 12 10 8 15 15 H 1.48502 * 109.47342 * 240.00282 * 12 10 8 16 16 C 1.54335 * 103.02038 * 35.30728 * 5 4 2 17 17 N 1.47020 * 107.26582 * 338.13912 * 16 5 4 18 18 C 1.34775 * 125.64530 * 178.85312 * 17 16 5 19 19 O 1.21281 * 119.99857 * 179.69294 * 18 17 16 20 20 C 1.50706 * 120.00187 * 359.68613 * 18 17 16 21 21 C 1.54346 * 110.82328 * 295.89841 * 20 18 17 22 22 C 1.51676 * 105.01763 * 215.56502 * 21 20 18 23 23 C 1.38500 * 130.30799 * 197.10047 * 22 21 20 24 24 C 1.38102 * 120.21423 * 179.80911 * 23 22 21 25 25 C 1.38256 * 119.93585 * 359.97438 * 24 23 22 26 26 C 1.38102 * 119.93197 * 0.02562 * 25 24 23 27 27 C 1.38216 * 109.83839 * 16.92092 * 22 21 20 28 28 C 1.51366 * 109.76007 * 0.15873 * 27 22 21 29 29 H 1.09002 * 109.47210 * 299.21788 * 1 2 3 30 30 H 1.09009 * 109.47149 * 59.21648 * 1 2 3 31 31 H 1.08994 * 109.47144 * 179.21213 * 1 2 3 32 32 H 1.08995 * 111.00297 * 322.22523 * 4 2 1 33 33 H 1.09002 * 111.00475 * 86.08479 * 4 2 1 34 34 H 0.97004 * 119.99772 * 334.99105 * 7 5 4 35 35 H 0.96997 * 119.99510 * 179.97438 * 11 10 8 36 36 H 1.09007 * 109.98818 * 218.66022 * 16 5 4 37 37 H 1.08999 * 109.77563 * 97.50152 * 16 5 4 38 38 H 1.09002 * 110.72405 * 59.30108 * 20 18 17 39 39 H 1.08998 * 110.30425 * 334.34972 * 21 20 18 40 40 H 1.08998 * 110.30056 * 96.50050 * 21 20 18 41 41 H 1.07994 * 119.89024 * 359.80218 * 23 22 21 42 42 H 1.08000 * 120.03318 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.03407 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.88992 * 180.02562 * 26 25 24 45 45 H 1.09002 * 110.29916 * 223.88862 * 28 27 22 46 46 H 1.08996 * 110.38954 * 101.78071 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7772 -1.2269 5 6 3.4777 -1.2005 -0.7329 6 1 4.1951 -0.3922 -0.8747 7 7 3.9250 -2.4144 -1.4206 8 6 5.2630 -2.6779 -1.5438 9 1 5.9887 -1.9908 -1.1344 10 6 5.6867 -3.8283 -2.1949 11 7 4.8023 -4.6655 -2.6943 12 14 7.5121 -4.1875 -2.3636 13 1 8.2922 -3.0987 -1.7225 14 1 7.8260 -5.4781 -1.6994 15 1 7.8692 -4.2717 -3.8026 16 6 3.2524 -1.4717 0.7696 17 7 2.0430 -0.7372 1.1690 18 6 1.4972 -0.7338 2.4013 19 8 0.4967 -0.0840 2.6195 20 6 2.1301 -1.5375 3.5080 21 6 2.0744 -3.0470 3.1907 22 6 1.8574 -3.7226 4.5313 23 6 2.0376 -5.0429 4.9088 24 6 1.7761 -5.4365 6.2064 25 6 1.3334 -4.5103 7.1325 26 6 1.1531 -3.1934 6.7579 27 6 1.4144 -2.7966 5.4569 28 6 1.2986 -1.4358 4.8043 29 1 -0.3634 0.5016 0.8969 30 1 -0.3634 0.5260 -0.8829 31 1 -0.3633 -1.0275 -0.0141 32 1 1.4510 -1.6495 -1.4392 33 1 2.1399 -0.1285 -2.1000 34 1 3.2732 -3.0314 -1.7886 35 1 5.0985 -5.4691 -3.1496 36 1 4.1081 -1.1176 1.3446 37 1 3.1090 -2.5396 0.9342 38 1 3.1571 -1.2153 3.6799 39 1 1.2423 -3.2622 2.5205 40 1 3.0139 -3.3748 2.7458 41 1 2.3837 -5.7668 4.1861 42 1 1.9181 -6.4668 6.4978 43 1 1.1288 -4.8164 8.1478 44 1 0.8077 -2.4703 7.4820 45 1 1.7100 -0.6667 5.4581 46 1 0.2575 -1.2145 4.5696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989479030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:16 Heat of formation + Delta-G solvation = -14.043023 kcal Electronic energy + Delta-G solvation = -26257.437208 eV Core-core repulsion = 22724.938677 eV Total energy + Delta-G solvation = -3532.498531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80840 -40.54083 -38.75863 -36.46364 -35.93836 -33.28978 -32.91899 -32.30369 -30.20737 -29.93666 -28.27891 -26.67698 -25.89822 -24.79061 -22.87508 -22.03627 -21.83949 -21.57706 -19.76127 -19.21488 -18.22425 -17.37819 -17.20927 -16.82044 -16.60927 -16.15964 -15.71129 -15.43777 -15.21068 -15.01981 -14.72430 -14.31914 -14.19023 -14.13696 -13.92925 -13.75482 -13.42095 -13.29744 -13.24702 -13.00827 -12.92132 -12.81470 -12.36971 -12.23166 -12.21007 -12.12945 -12.07317 -12.04469 -11.72057 -11.66774 -11.50969 -11.01183 -10.56650 -9.73864 -9.60904 -9.45563 -9.05486 -7.93549 -5.23309 0.41365 0.46063 1.50368 1.51804 1.55677 1.60609 1.96057 2.57682 2.82324 3.25232 3.32867 3.38680 3.63881 3.82168 3.89861 3.91966 4.00170 4.08344 4.16072 4.20728 4.24994 4.28738 4.33989 4.51216 4.52827 4.59639 4.64626 4.66436 4.75053 4.78221 4.83965 4.87847 4.89338 5.02071 5.12610 5.14872 5.17617 5.20866 5.27969 5.34002 5.52551 5.55590 5.57086 5.60325 5.70693 6.10106 6.27296 6.54901 7.13325 7.35242 8.06722 8.30440 9.29546 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.004040 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.997364 B = 6929.134586 C = 8975.082476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.087 0.913 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.073 0.927 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.082 0.918 10 C -0.069 4.069 11 N -0.967 5.967 12 Si 0.966 3.034 13 H -0.264 1.264 14 H -0.297 1.297 15 H -0.297 1.297 16 C 0.083 3.917 17 N -0.606 5.606 18 C 0.537 3.463 19 O -0.568 6.568 20 C -0.102 4.102 21 C -0.065 4.065 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.106 4.106 28 C -0.059 4.059 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.140 0.860 45 H 0.093 0.907 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 5.377 16.642 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 H 0.105 0.895 4 C -0.165 4.165 5 C 0.055 3.945 6 H 0.091 0.909 7 N -0.362 5.362 8 C -0.372 4.372 9 H 0.100 0.900 10 C -0.261 4.261 11 N -0.617 5.617 12 Si 0.796 3.204 13 H -0.188 1.188 14 H -0.224 1.224 15 H -0.224 1.224 16 C -0.043 4.043 17 N -0.339 5.339 18 C 0.327 3.673 19 O -0.448 6.448 20 C -0.123 4.123 21 C -0.103 4.103 22 C -0.114 4.114 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.132 4.132 27 C -0.106 4.106 28 C -0.096 4.096 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.141 0.859 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.111 0.889 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.269 5.748 16.809 19.194 hybrid contribution 0.792 -0.927 -0.712 1.412 sum -6.477 4.821 16.097 18.008 Atomic orbital electron populations 1.22068 0.93853 1.01766 1.03499 1.21965 0.95134 0.95725 0.83911 0.89494 1.23079 0.95902 1.00221 0.97297 1.21364 0.94717 0.89315 0.89148 0.90923 1.42515 1.04228 1.23474 1.66019 1.19681 0.84705 1.03885 1.28899 0.90033 1.25481 1.01218 0.97804 1.01629 1.69815 1.33830 1.13909 1.44191 0.85177 0.80811 0.77601 0.76785 1.18798 1.22412 1.22442 1.23067 0.85907 0.96321 0.99006 1.48611 1.28187 1.48031 1.09084 1.20247 0.83404 0.81210 0.82477 1.90589 1.26486 1.45437 1.82306 1.21933 1.01797 0.94890 0.93648 1.20955 1.02615 0.92043 0.94672 1.20686 1.00618 0.94466 0.95603 1.20893 1.00830 0.94700 0.97476 1.21365 0.99351 1.00927 0.92638 1.21405 0.99097 0.92617 1.00728 1.20917 1.00446 0.97165 0.94681 1.20719 0.99651 0.95840 0.94436 1.20839 1.00974 0.94260 0.93531 0.91118 0.90137 0.94134 0.91702 0.88639 0.79246 0.94098 0.91143 0.91937 0.86411 0.91467 0.89859 0.85864 0.83664 0.83089 0.84208 0.88891 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.71 71.98 0.63 -3.50 16 2 C 0.14 3.71 3.76 45.47 0.17 3.88 16 3 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.13 -3.73 6.13 31.99 0.20 -3.53 16 5 C 0.16 5.76 3.61 46.18 0.17 5.93 16 6 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 7 N -0.72 -33.16 5.15 -317.30 -1.64 -34.79 16 8 C -0.24 -12.24 9.96 84.03 0.84 -11.40 16 9 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 10 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 11 N -0.97 -56.53 13.06 21.65 0.28 -56.25 16 12 Si 0.97 43.88 29.55 68.60 2.03 45.91 16 13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 16 C 0.08 2.61 5.92 86.73 0.51 3.13 16 17 N -0.61 -17.86 3.24 -788.14 -2.55 -20.42 16 18 C 0.54 16.08 6.89 87.66 0.60 16.69 16 19 O -0.57 -19.34 13.19 -3.03 -0.04 -19.38 16 20 C -0.10 -2.59 2.89 -10.62 -0.03 -2.62 16 21 C -0.07 -1.77 5.14 30.62 0.16 -1.61 16 22 C -0.11 -2.94 6.15 -19.50 -0.12 -3.06 16 23 C -0.12 -2.86 10.04 22.30 0.22 -2.63 16 24 C -0.13 -2.40 10.05 22.24 0.22 -2.18 16 25 C -0.12 -2.11 10.05 22.24 0.22 -1.88 16 26 C -0.11 -2.24 10.04 22.30 0.22 -2.02 16 27 C -0.11 -2.53 6.14 -19.60 -0.12 -2.65 16 28 C -0.06 -1.39 6.09 30.52 0.19 -1.21 16 29 H 0.07 2.11 5.89 -2.39 -0.01 2.10 16 30 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 2.09 7.92 -2.39 -0.02 2.07 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.38 18.86 7.76 -92.71 -0.72 18.14 16 35 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 36 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.06 2.18 6.14 -2.39 -0.01 2.17 16 38 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.07 2.00 7.89 -2.39 -0.02 1.98 16 40 H 0.08 2.30 7.06 -2.39 -0.02 2.29 16 41 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.08 2.23 7.02 -2.39 -0.02 2.21 16 Total: -1.00 -62.58 365.70 2.89 -59.69 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.26 Total: 37.15 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.55 Total: -11.92 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -3.91 Total: -111.46 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.04 Total: -19.38 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -62.58 2.89 -59.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989479030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.651 kcal (2) G-P(sol) polarization free energy of solvation -62.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds