Wall clock time and date at job start Tue Mar 31 2020 12:06:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 110.32625 * 2 1
4 4 C 1.54913 * 110.36299 * 237.64778 * 2 1 3
5 5 C 1.55162 * 101.57555 * 204.15212 * 4 2 1
6 6 H 1.08997 * 110.71877 * 276.95715 * 5 4 2
7 7 N 1.46505 * 110.71813 * 153.86871 * 5 4 2
8 8 C 1.36929 * 119.99942 * 154.99951 * 7 5 4
9 9 H 1.08000 * 120.00363 * 359.97438 * 8 7 5
10 10 C 1.38812 * 119.99876 * 179.97438 * 8 7 5
11 11 N 1.31624 * 119.99969 * 0.02562 * 10 8 7
12 12 Si 1.86802 * 120.00032 * 179.97438 * 10 8 7
13 13 H 1.48496 * 109.47234 * 0.02562 * 12 10 8
14 14 H 1.48501 * 109.46946 * 120.00573 * 12 10 8
15 15 H 1.48502 * 109.47342 * 240.00282 * 12 10 8
16 16 C 1.54335 * 103.02038 * 35.30728 * 5 4 2
17 17 N 1.47020 * 107.26582 * 338.13912 * 16 5 4
18 18 C 1.34775 * 125.64530 * 178.85312 * 17 16 5
19 19 O 1.21281 * 119.99857 * 179.69294 * 18 17 16
20 20 C 1.50706 * 120.00187 * 359.68613 * 18 17 16
21 21 C 1.54346 * 110.82328 * 295.89841 * 20 18 17
22 22 C 1.51676 * 105.01763 * 215.56502 * 21 20 18
23 23 C 1.38500 * 130.30799 * 197.10047 * 22 21 20
24 24 C 1.38102 * 120.21423 * 179.80911 * 23 22 21
25 25 C 1.38256 * 119.93585 * 359.97438 * 24 23 22
26 26 C 1.38102 * 119.93197 * 0.02562 * 25 24 23
27 27 C 1.38216 * 109.83839 * 16.92092 * 22 21 20
28 28 C 1.51366 * 109.76007 * 0.15873 * 27 22 21
29 29 H 1.09002 * 109.47210 * 299.21788 * 1 2 3
30 30 H 1.09009 * 109.47149 * 59.21648 * 1 2 3
31 31 H 1.08994 * 109.47144 * 179.21213 * 1 2 3
32 32 H 1.08995 * 111.00297 * 322.22523 * 4 2 1
33 33 H 1.09002 * 111.00475 * 86.08479 * 4 2 1
34 34 H 0.97004 * 119.99772 * 334.99105 * 7 5 4
35 35 H 0.96997 * 119.99510 * 179.97438 * 11 10 8
36 36 H 1.09007 * 109.98818 * 218.66022 * 16 5 4
37 37 H 1.08999 * 109.77563 * 97.50152 * 16 5 4
38 38 H 1.09002 * 110.72405 * 59.30108 * 20 18 17
39 39 H 1.08998 * 110.30425 * 334.34972 * 21 20 18
40 40 H 1.08998 * 110.30056 * 96.50050 * 21 20 18
41 41 H 1.07994 * 119.89024 * 359.80218 * 23 22 21
42 42 H 1.08000 * 120.03318 * 180.02562 * 24 23 22
43 43 H 1.07997 * 120.03407 * 180.02562 * 25 24 23
44 44 H 1.08005 * 119.88992 * 180.02562 * 26 25 24
45 45 H 1.09002 * 110.29916 * 223.88862 * 28 27 22
46 46 H 1.08996 * 110.38954 * 101.78071 * 28 27 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9086 1.0221 0.0000
4 6 2.0691 -0.7772 -1.2269
5 6 3.4777 -1.2005 -0.7329
6 1 4.1951 -0.3922 -0.8747
7 7 3.9250 -2.4144 -1.4206
8 6 5.2630 -2.6779 -1.5438
9 1 5.9887 -1.9908 -1.1344
10 6 5.6867 -3.8283 -2.1949
11 7 4.8023 -4.6655 -2.6943
12 14 7.5121 -4.1875 -2.3636
13 1 8.2922 -3.0987 -1.7225
14 1 7.8260 -5.4781 -1.6994
15 1 7.8692 -4.2717 -3.8026
16 6 3.2524 -1.4717 0.7696
17 7 2.0430 -0.7372 1.1690
18 6 1.4972 -0.7338 2.4013
19 8 0.4967 -0.0840 2.6195
20 6 2.1301 -1.5375 3.5080
21 6 2.0744 -3.0470 3.1907
22 6 1.8574 -3.7226 4.5313
23 6 2.0376 -5.0429 4.9088
24 6 1.7761 -5.4365 6.2064
25 6 1.3334 -4.5103 7.1325
26 6 1.1531 -3.1934 6.7579
27 6 1.4144 -2.7966 5.4569
28 6 1.2986 -1.4358 4.8043
29 1 -0.3634 0.5016 0.8969
30 1 -0.3634 0.5260 -0.8829
31 1 -0.3633 -1.0275 -0.0141
32 1 1.4510 -1.6495 -1.4392
33 1 2.1399 -0.1285 -2.1000
34 1 3.2732 -3.0314 -1.7886
35 1 5.0985 -5.4691 -3.1496
36 1 4.1081 -1.1176 1.3446
37 1 3.1090 -2.5396 0.9342
38 1 3.1571 -1.2153 3.6799
39 1 1.2423 -3.2622 2.5205
40 1 3.0139 -3.3748 2.7458
41 1 2.3837 -5.7668 4.1861
42 1 1.9181 -6.4668 6.4978
43 1 1.1288 -4.8164 8.1478
44 1 0.8077 -2.4703 7.4820
45 1 1.7100 -0.6667 5.4581
46 1 0.2575 -1.2145 4.5696
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000989479030.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:16
Heat of formation + Delta-G solvation = -14.043023 kcal
Electronic energy + Delta-G solvation = -26257.437208 eV
Core-core repulsion = 22724.938677 eV
Total energy + Delta-G solvation = -3532.498531 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.80840 -40.54083 -38.75863 -36.46364 -35.93836 -33.28978 -32.91899 -32.30369
-30.20737 -29.93666 -28.27891 -26.67698 -25.89822 -24.79061 -22.87508 -22.03627
-21.83949 -21.57706 -19.76127 -19.21488 -18.22425 -17.37819 -17.20927 -16.82044
-16.60927 -16.15964 -15.71129 -15.43777 -15.21068 -15.01981 -14.72430 -14.31914
-14.19023 -14.13696 -13.92925 -13.75482 -13.42095 -13.29744 -13.24702 -13.00827
-12.92132 -12.81470 -12.36971 -12.23166 -12.21007 -12.12945 -12.07317 -12.04469
-11.72057 -11.66774 -11.50969 -11.01183 -10.56650 -9.73864 -9.60904 -9.45563
-9.05486 -7.93549 -5.23309 0.41365 0.46063 1.50368 1.51804 1.55677
1.60609 1.96057 2.57682 2.82324 3.25232 3.32867 3.38680 3.63881
3.82168 3.89861 3.91966 4.00170 4.08344 4.16072 4.20728 4.24994
4.28738 4.33989 4.51216 4.52827 4.59639 4.64626 4.66436 4.75053
4.78221 4.83965 4.87847 4.89338 5.02071 5.12610 5.14872 5.17617
5.20866 5.27969 5.34002 5.52551 5.55590 5.57086 5.60325 5.70693
6.10106 6.27296 6.54901 7.13325 7.35242 8.06722 8.30440 9.29546
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.010901 B = 0.004040 C = 0.003119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2567.997364 B = 6929.134586 C = 8975.082476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.135 3.865
3 H 0.087 0.913
4 C -0.126 4.126
5 C 0.165 3.835
6 H 0.073 0.927
7 N -0.724 5.724
8 C -0.240 4.240
9 H 0.082 0.918
10 C -0.069 4.069
11 N -0.967 5.967
12 Si 0.966 3.034
13 H -0.264 1.264
14 H -0.297 1.297
15 H -0.297 1.297
16 C 0.083 3.917
17 N -0.606 5.606
18 C 0.537 3.463
19 O -0.568 6.568
20 C -0.102 4.102
21 C -0.065 4.065
22 C -0.114 4.114
23 C -0.121 4.121
24 C -0.125 4.125
25 C -0.121 4.121
26 C -0.114 4.114
27 C -0.106 4.106
28 C -0.059 4.059
29 H 0.070 0.930
30 H 0.080 0.920
31 H 0.039 0.961
32 H 0.064 0.936
33 H 0.095 0.905
34 H 0.375 0.625
35 H 0.250 0.750
36 H 0.070 0.930
37 H 0.062 0.938
38 H 0.118 0.882
39 H 0.067 0.933
40 H 0.083 0.917
41 H 0.123 0.877
42 H 0.146 0.854
43 H 0.151 0.849
44 H 0.140 0.860
45 H 0.093 0.907
46 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.929 5.377 16.642 18.811
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.033 3.967
3 H 0.105 0.895
4 C -0.165 4.165
5 C 0.055 3.945
6 H 0.091 0.909
7 N -0.362 5.362
8 C -0.372 4.372
9 H 0.100 0.900
10 C -0.261 4.261
11 N -0.617 5.617
12 Si 0.796 3.204
13 H -0.188 1.188
14 H -0.224 1.224
15 H -0.224 1.224
16 C -0.043 4.043
17 N -0.339 5.339
18 C 0.327 3.673
19 O -0.448 6.448
20 C -0.123 4.123
21 C -0.103 4.103
22 C -0.114 4.114
23 C -0.139 4.139
24 C -0.143 4.143
25 C -0.138 4.138
26 C -0.132 4.132
27 C -0.106 4.106
28 C -0.096 4.096
29 H 0.089 0.911
30 H 0.099 0.901
31 H 0.059 0.941
32 H 0.083 0.917
33 H 0.114 0.886
34 H 0.208 0.792
35 H 0.059 0.941
36 H 0.089 0.911
37 H 0.081 0.919
38 H 0.136 0.864
39 H 0.085 0.915
40 H 0.101 0.899
41 H 0.141 0.859
42 H 0.163 0.837
43 H 0.169 0.831
44 H 0.158 0.842
45 H 0.111 0.889
46 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -7.269 5.748 16.809 19.194
hybrid contribution 0.792 -0.927 -0.712 1.412
sum -6.477 4.821 16.097 18.008
Atomic orbital electron populations
1.22068 0.93853 1.01766 1.03499 1.21965 0.95134 0.95725 0.83911
0.89494 1.23079 0.95902 1.00221 0.97297 1.21364 0.94717 0.89315
0.89148 0.90923 1.42515 1.04228 1.23474 1.66019 1.19681 0.84705
1.03885 1.28899 0.90033 1.25481 1.01218 0.97804 1.01629 1.69815
1.33830 1.13909 1.44191 0.85177 0.80811 0.77601 0.76785 1.18798
1.22412 1.22442 1.23067 0.85907 0.96321 0.99006 1.48611 1.28187
1.48031 1.09084 1.20247 0.83404 0.81210 0.82477 1.90589 1.26486
1.45437 1.82306 1.21933 1.01797 0.94890 0.93648 1.20955 1.02615
0.92043 0.94672 1.20686 1.00618 0.94466 0.95603 1.20893 1.00830
0.94700 0.97476 1.21365 0.99351 1.00927 0.92638 1.21405 0.99097
0.92617 1.00728 1.20917 1.00446 0.97165 0.94681 1.20719 0.99651
0.95840 0.94436 1.20839 1.00974 0.94260 0.93531 0.91118 0.90137
0.94134 0.91702 0.88639 0.79246 0.94098 0.91143 0.91937 0.86411
0.91467 0.89859 0.85864 0.83664 0.83089 0.84208 0.88891 0.89889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.12 8.71 71.98 0.63 -3.50 16
2 C 0.14 3.71 3.76 45.47 0.17 3.88 16
3 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16
4 C -0.13 -3.73 6.13 31.99 0.20 -3.53 16
5 C 0.16 5.76 3.61 46.18 0.17 5.93 16
6 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16
7 N -0.72 -33.16 5.15 -317.30 -1.64 -34.79 16
8 C -0.24 -12.24 9.96 84.03 0.84 -11.40 16
9 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16
10 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16
11 N -0.97 -56.53 13.06 21.65 0.28 -56.25 16
12 Si 0.97 43.88 29.55 68.60 2.03 45.91 16
13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16
14 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16
15 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16
16 C 0.08 2.61 5.92 86.73 0.51 3.13 16
17 N -0.61 -17.86 3.24 -788.14 -2.55 -20.42 16
18 C 0.54 16.08 6.89 87.66 0.60 16.69 16
19 O -0.57 -19.34 13.19 -3.03 -0.04 -19.38 16
20 C -0.10 -2.59 2.89 -10.62 -0.03 -2.62 16
21 C -0.07 -1.77 5.14 30.62 0.16 -1.61 16
22 C -0.11 -2.94 6.15 -19.50 -0.12 -3.06 16
23 C -0.12 -2.86 10.04 22.30 0.22 -2.63 16
24 C -0.13 -2.40 10.05 22.24 0.22 -2.18 16
25 C -0.12 -2.11 10.05 22.24 0.22 -1.88 16
26 C -0.11 -2.24 10.04 22.30 0.22 -2.02 16
27 C -0.11 -2.53 6.14 -19.60 -0.12 -2.65 16
28 C -0.06 -1.39 6.09 30.52 0.19 -1.21 16
29 H 0.07 2.11 5.89 -2.39 -0.01 2.10 16
30 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16
31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
32 H 0.06 2.09 7.92 -2.39 -0.02 2.07 16
33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16
34 H 0.38 18.86 7.76 -92.71 -0.72 18.14 16
35 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16
36 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16
37 H 0.06 2.18 6.14 -2.39 -0.01 2.17 16
38 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16
39 H 0.07 2.00 7.89 -2.39 -0.02 1.98 16
40 H 0.08 2.30 7.06 -2.39 -0.02 2.29 16
41 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16
42 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16
43 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16
44 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16
45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16
46 H 0.08 2.23 7.02 -2.39 -0.02 2.21 16
Total: -1.00 -62.58 365.70 2.89 -59.69
By element:
Atomic # 1 Polarization: 36.90 SS G_CDS: 0.26 Total: 37.15 kcal
Atomic # 6 Polarization: -16.47 SS G_CDS: 4.55 Total: -11.92 kcal
Atomic # 7 Polarization: -107.55 SS G_CDS: -3.91 Total: -111.46 kcal
Atomic # 8 Polarization: -19.34 SS G_CDS: -0.04 Total: -19.38 kcal
Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal
Total: -62.58 2.89 -59.69 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989479030.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.651 kcal
(2) G-P(sol) polarization free energy of solvation -62.582 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.931 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.694 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.043 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds