Wall clock time and date at job start Tue Mar 31 2020 12:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.87232 * 2 1 4 4 C 1.54316 * 109.88147 * 121.17607 * 2 1 3 5 5 C 1.55154 * 102.94404 * 141.60988 * 4 2 1 6 6 H 1.08992 * 111.03836 * 82.58672 * 5 4 2 7 7 N 1.46501 * 111.00693 * 206.42535 * 5 4 2 8 8 C 1.36935 * 120.00079 * 198.64728 * 7 5 4 9 9 H 1.08007 * 119.99838 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00189 * 179.72539 * 8 7 5 11 11 N 1.31621 * 119.99680 * 0.27455 * 10 8 7 12 12 Si 1.86795 * 120.00210 * 180.27913 * 10 8 7 13 13 H 1.48499 * 109.47565 * 59.99868 * 12 10 8 14 14 H 1.48501 * 109.47472 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47207 * 299.99758 * 12 10 8 16 16 C 1.54916 * 101.58199 * 324.49955 * 5 4 2 17 17 N 1.47023 * 109.88300 * 238.98532 * 2 1 3 18 18 C 1.34773 * 125.64732 * 61.60490 * 17 2 1 19 19 O 1.21557 * 119.99879 * 173.82895 * 18 17 2 20 20 C 1.47846 * 120.00118 * 353.83464 * 18 17 2 21 21 C 1.39593 * 120.18592 * 16.58545 * 20 18 17 22 22 C 1.37805 * 119.78240 * 179.78011 * 21 20 18 23 23 C 1.38663 * 120.41207 * 0.48342 * 22 21 20 24 24 C 1.38371 * 120.08312 * 359.77773 * 23 22 21 25 25 C 1.38239 * 119.99309 * 359.97309 * 24 23 22 26 26 C 1.51395 * 109.74851 * 179.97438 * 24 23 22 27 27 C 1.54339 * 105.17104 * 342.77956 * 26 24 23 28 28 C 1.51424 * 130.21500 * 179.73495 * 23 22 21 29 29 H 1.08998 * 109.47022 * 197.53234 * 1 2 3 30 30 H 1.08993 * 109.47259 * 317.53664 * 1 2 3 31 31 H 1.08999 * 109.46890 * 77.53621 * 1 2 3 32 32 H 1.09012 * 110.71932 * 23.24975 * 4 2 1 33 33 H 1.08992 * 110.72492 * 259.97415 * 4 2 1 34 34 H 0.96999 * 120.00105 * 18.65464 * 7 5 4 35 35 H 0.96999 * 119.99476 * 179.97438 * 11 10 8 36 36 H 1.08997 * 110.36742 * 155.84222 * 16 5 4 37 37 H 1.09003 * 110.36433 * 278.06130 * 16 5 4 38 38 H 1.07993 * 120.10597 * 0.02562 * 21 20 18 39 39 H 1.08005 * 119.79316 * 180.22622 * 22 21 20 40 40 H 1.07999 * 119.95207 * 180.02562 * 25 24 23 41 41 H 1.08996 * 110.30359 * 101.70230 * 26 24 23 42 42 H 1.08994 * 110.30690 * 223.86045 * 26 24 23 43 43 H 1.09003 * 110.82036 * 268.18466 * 27 26 24 44 44 H 1.09000 * 110.98593 * 144.71874 * 27 26 24 45 45 H 1.08997 * 110.30217 * 316.19439 * 28 23 22 46 46 H 1.08996 * 110.30575 * 78.34430 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2416 5 6 3.2876 -1.5152 0.6903 6 1 4.1657 -0.8704 0.6592 7 7 3.5531 -2.7217 1.4778 8 6 4.7817 -3.3232 1.4157 9 1 5.5551 -2.9080 0.7865 10 6 5.0351 -4.4630 2.1663 11 7 4.0928 -4.9688 2.9335 12 14 6.7135 -5.2791 2.0876 13 1 7.7531 -4.3173 2.5339 14 1 6.7270 -6.4702 2.9745 15 1 6.9947 -5.6993 0.6913 16 6 2.8145 -1.8784 -0.7395 17 7 2.0301 -0.7124 -1.1849 18 6 1.8074 -0.3585 -2.4662 19 8 2.3627 -0.9566 -3.3671 20 6 0.8880 0.7570 -2.7759 21 6 0.5202 1.6612 -1.7780 22 6 -0.3337 2.7006 -2.0770 23 6 -0.8377 2.8480 -3.3604 24 6 -0.4813 1.9519 -4.3527 25 6 0.3787 0.9085 -4.0651 26 6 -1.1612 2.3298 -5.6515 27 6 -2.3056 3.2827 -5.2460 28 6 -1.7814 3.8880 -3.9267 29 1 -0.3633 -0.9799 0.3096 30 1 -0.3633 0.7581 0.6937 31 1 -0.3633 0.2218 -1.0035 32 1 1.3050 -1.4483 1.6161 33 1 2.3529 -0.0489 2.0200 34 1 2.8586 -3.0944 2.0431 35 1 4.2698 -5.7655 3.4577 36 1 3.6716 -2.0318 -1.3951 37 1 2.1902 -2.7716 -0.7170 38 1 0.9068 1.5488 -0.7760 39 1 -0.6155 3.4025 -1.3059 40 1 0.6567 0.2097 -4.8402 41 1 -0.4596 2.8405 -6.3110 42 1 -1.5634 1.4424 -6.1401 43 1 -3.2295 2.7292 -5.0780 44 1 -2.4520 4.0588 -5.9973 45 1 -2.6070 4.0650 -3.2373 46 1 -1.2464 4.8170 -4.1236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989779491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:21 Heat of formation + Delta-G solvation = 34.375007 kcal Electronic energy + Delta-G solvation = -26022.874410 eV Core-core repulsion = 22492.475443 eV Total energy + Delta-G solvation = -3530.398967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99727 -39.52205 -37.49110 -36.00979 -34.33509 -31.88771 -31.64736 -31.25268 -29.74929 -28.01454 -27.64278 -25.65901 -24.19445 -23.00525 -22.46168 -21.17964 -21.05113 -20.27316 -19.09332 -17.44901 -16.87811 -16.22329 -16.15667 -15.70079 -15.44755 -14.98641 -14.58144 -14.31509 -13.87132 -13.80480 -13.47341 -13.30091 -13.23781 -13.02185 -12.77744 -12.61036 -12.29462 -12.25606 -12.13622 -11.74149 -11.64989 -11.51160 -11.15859 -11.07344 -10.94815 -10.86553 -10.75186 -10.58133 -10.32225 -10.03778 -9.78752 -9.70346 -9.01468 -8.98390 -8.57026 -8.32829 -7.08813 -5.84287 -3.15077 0.78854 1.22507 2.89113 3.14455 3.42481 3.46973 3.48076 3.74909 4.10498 4.25419 4.50495 4.53502 4.65624 4.68242 4.78303 4.86376 4.96888 4.98676 5.00135 5.27188 5.32019 5.37205 5.37641 5.46505 5.48262 5.55299 5.61266 5.63163 5.67413 5.73846 5.79775 5.82071 5.93478 5.94532 6.09104 6.16901 6.17313 6.24424 6.26428 6.37929 6.40454 6.53710 6.62705 6.75587 6.87791 7.65409 7.77313 8.32899 8.36639 9.45401 9.98006 10.33049 11.37670 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033592 B = 0.002682 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.341671 B =10438.961761 C =10985.265870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.122 3.878 3 H 0.083 0.917 4 C -0.135 4.135 5 C 0.172 3.828 6 H 0.065 0.935 7 N -0.711 5.711 8 C -0.248 4.248 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.931 5.931 12 Si 0.909 3.091 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.284 1.284 16 C 0.082 3.918 17 N -0.603 5.603 18 C 0.569 3.431 19 O -0.542 6.542 20 C -0.133 4.133 21 C -0.102 4.102 22 C -0.127 4.127 23 C -0.075 4.075 24 C -0.116 4.116 25 C -0.047 4.047 26 C -0.081 4.081 27 C -0.121 4.121 28 C -0.085 4.085 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.163 0.837 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 19.646 -11.044 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.018 3.982 3 H 0.101 0.899 4 C -0.174 4.174 5 C 0.060 3.940 6 H 0.083 0.917 7 N -0.351 5.351 8 C -0.379 4.379 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.578 5.578 12 Si 0.740 3.260 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.043 4.043 17 N -0.336 5.336 18 C 0.358 3.642 19 O -0.421 6.421 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.075 4.075 24 C -0.116 4.116 25 C -0.066 4.066 26 C -0.118 4.118 27 C -0.158 4.158 28 C -0.122 4.122 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.179 0.821 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.157 19.238 -11.574 26.542 hybrid contribution 0.649 -0.716 0.192 0.986 sum -13.507 18.521 -11.383 25.594 Atomic orbital electron populations 1.22891 0.94949 1.03118 1.03284 1.21943 0.94203 0.95942 0.86114 0.89928 1.23036 0.99331 0.99632 0.95385 1.21312 0.94431 0.89541 0.88748 0.91742 1.42285 1.14100 1.27610 1.51130 1.19211 0.90032 1.06546 1.22125 0.90978 1.24765 0.98008 0.98421 0.99300 1.69650 1.32523 1.24140 1.31500 0.86241 0.83583 0.78783 0.77423 1.21131 1.21637 1.21082 1.23441 0.94954 0.87015 0.98875 1.48477 1.51905 1.29045 1.04162 1.17907 0.81474 0.83226 0.81551 1.90764 1.50661 1.55559 1.45137 1.19802 1.01252 0.97869 0.94701 1.22569 0.95797 0.92717 1.00856 1.20559 0.99466 0.98829 0.95679 1.20826 0.96993 0.96129 0.93571 1.20470 0.98900 0.95858 0.96367 1.20670 0.94078 0.96364 0.95495 1.21028 0.96681 0.99615 0.94427 1.22295 0.98085 0.98684 0.96749 1.21105 0.97455 0.96954 0.96652 0.91680 0.91222 0.90421 0.90063 0.90071 0.77838 0.93300 0.90883 0.91328 0.82060 0.85759 0.85167 0.90190 0.90618 0.90909 0.90502 0.90535 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 7.78 37.16 0.29 -1.73 16 2 C 0.12 1.56 2.75 -66.95 -0.18 1.38 16 3 H 0.08 0.91 6.19 -51.93 -0.32 0.59 16 4 C -0.14 -1.97 6.10 -24.90 -0.15 -2.12 16 5 C 0.17 3.28 3.69 -65.78 -0.24 3.04 16 6 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 7 N -0.71 -17.10 5.28 -51.35 -0.27 -17.37 16 8 C -0.25 -6.73 9.98 -15.06 -0.15 -6.88 16 9 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 10 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 12 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.08 1.58 6.63 -2.53 -0.02 1.56 16 17 N -0.60 -9.87 3.06 -164.12 -0.50 -10.37 16 18 C 0.57 9.86 7.61 -12.33 -0.09 9.77 16 19 O -0.54 -11.35 16.70 5.32 0.09 -11.26 16 20 C -0.13 -1.86 5.06 -105.01 -0.53 -2.39 16 21 C -0.10 -1.14 6.23 -39.23 -0.24 -1.39 16 22 C -0.13 -1.23 10.02 -39.58 -0.40 -1.62 16 23 C -0.07 -0.72 6.14 -104.06 -0.64 -1.36 16 24 C -0.12 -1.24 6.12 -104.23 -0.64 -1.88 16 25 C -0.05 -0.62 9.59 -39.13 -0.38 -0.99 16 26 C -0.08 -0.63 6.77 -26.84 -0.18 -0.81 16 27 C -0.12 -0.74 7.08 -25.33 -0.18 -0.92 16 28 C -0.08 -0.58 6.77 -26.83 -0.18 -0.76 16 29 H 0.06 0.77 7.70 -51.93 -0.40 0.37 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.90 4.28 -51.93 -0.22 0.68 16 32 H 0.08 1.21 7.43 -51.92 -0.39 0.83 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.39 9.79 7.71 -40.82 -0.31 9.47 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 1.53 7.98 -51.93 -0.41 1.12 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.16 1.63 2.60 -52.49 -0.14 1.49 16 39 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.13 1.75 7.74 -52.49 -0.41 1.34 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -32.08 360.01 -10.37 -42.45 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.80 Total: 8.15 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -4.01 Total: -7.47 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.05 Total: -54.48 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.08 -10.37 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989779491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.821 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds