Wall clock time and date at job start Tue Mar 31 2020 12:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.87232 * 2 1 4 4 C 1.54316 * 109.88147 * 121.17607 * 2 1 3 5 5 C 1.55154 * 102.94404 * 141.60988 * 4 2 1 6 6 H 1.08992 * 111.03836 * 82.58672 * 5 4 2 7 7 N 1.46501 * 111.00693 * 206.42535 * 5 4 2 8 8 C 1.36935 * 120.00079 * 198.64728 * 7 5 4 9 9 H 1.08007 * 119.99838 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00189 * 179.72539 * 8 7 5 11 11 N 1.31621 * 119.99680 * 0.27455 * 10 8 7 12 12 Si 1.86795 * 120.00210 * 180.27913 * 10 8 7 13 13 H 1.48499 * 109.47565 * 59.99868 * 12 10 8 14 14 H 1.48501 * 109.47472 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47207 * 299.99758 * 12 10 8 16 16 C 1.54916 * 101.58199 * 324.49955 * 5 4 2 17 17 N 1.47023 * 109.88300 * 238.98532 * 2 1 3 18 18 C 1.34773 * 125.64732 * 61.60490 * 17 2 1 19 19 O 1.21557 * 119.99879 * 173.82895 * 18 17 2 20 20 C 1.47846 * 120.00118 * 353.83464 * 18 17 2 21 21 C 1.39593 * 120.18592 * 16.58545 * 20 18 17 22 22 C 1.37805 * 119.78240 * 179.78011 * 21 20 18 23 23 C 1.38663 * 120.41207 * 0.48342 * 22 21 20 24 24 C 1.38371 * 120.08312 * 359.77773 * 23 22 21 25 25 C 1.38239 * 119.99309 * 359.97309 * 24 23 22 26 26 C 1.51395 * 109.74851 * 179.97438 * 24 23 22 27 27 C 1.54339 * 105.17104 * 342.77956 * 26 24 23 28 28 C 1.51424 * 130.21500 * 179.73495 * 23 22 21 29 29 H 1.08998 * 109.47022 * 197.53234 * 1 2 3 30 30 H 1.08993 * 109.47259 * 317.53664 * 1 2 3 31 31 H 1.08999 * 109.46890 * 77.53621 * 1 2 3 32 32 H 1.09012 * 110.71932 * 23.24975 * 4 2 1 33 33 H 1.08992 * 110.72492 * 259.97415 * 4 2 1 34 34 H 0.96999 * 120.00105 * 18.65464 * 7 5 4 35 35 H 0.96999 * 119.99476 * 179.97438 * 11 10 8 36 36 H 1.08997 * 110.36742 * 155.84222 * 16 5 4 37 37 H 1.09003 * 110.36433 * 278.06130 * 16 5 4 38 38 H 1.07993 * 120.10597 * 0.02562 * 21 20 18 39 39 H 1.08005 * 119.79316 * 180.22622 * 22 21 20 40 40 H 1.07999 * 119.95207 * 180.02562 * 25 24 23 41 41 H 1.08996 * 110.30359 * 101.70230 * 26 24 23 42 42 H 1.08994 * 110.30690 * 223.86045 * 26 24 23 43 43 H 1.09003 * 110.82036 * 268.18466 * 27 26 24 44 44 H 1.09000 * 110.98593 * 144.71874 * 27 26 24 45 45 H 1.08997 * 110.30217 * 316.19439 * 28 23 22 46 46 H 1.08996 * 110.30575 * 78.34430 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2416 5 6 3.2876 -1.5152 0.6903 6 1 4.1657 -0.8704 0.6592 7 7 3.5531 -2.7217 1.4778 8 6 4.7817 -3.3232 1.4157 9 1 5.5551 -2.9080 0.7865 10 6 5.0351 -4.4630 2.1663 11 7 4.0928 -4.9688 2.9335 12 14 6.7135 -5.2791 2.0876 13 1 7.7531 -4.3173 2.5339 14 1 6.7270 -6.4702 2.9745 15 1 6.9947 -5.6993 0.6913 16 6 2.8145 -1.8784 -0.7395 17 7 2.0301 -0.7124 -1.1849 18 6 1.8074 -0.3585 -2.4662 19 8 2.3627 -0.9566 -3.3671 20 6 0.8880 0.7570 -2.7759 21 6 0.5202 1.6612 -1.7780 22 6 -0.3337 2.7006 -2.0770 23 6 -0.8377 2.8480 -3.3604 24 6 -0.4813 1.9519 -4.3527 25 6 0.3787 0.9085 -4.0651 26 6 -1.1612 2.3298 -5.6515 27 6 -2.3056 3.2827 -5.2460 28 6 -1.7814 3.8880 -3.9267 29 1 -0.3633 -0.9799 0.3096 30 1 -0.3633 0.7581 0.6937 31 1 -0.3633 0.2218 -1.0035 32 1 1.3050 -1.4483 1.6161 33 1 2.3529 -0.0489 2.0200 34 1 2.8586 -3.0944 2.0431 35 1 4.2698 -5.7655 3.4577 36 1 3.6716 -2.0318 -1.3951 37 1 2.1902 -2.7716 -0.7170 38 1 0.9068 1.5488 -0.7760 39 1 -0.6155 3.4025 -1.3059 40 1 0.6567 0.2097 -4.8402 41 1 -0.4596 2.8405 -6.3110 42 1 -1.5634 1.4424 -6.1401 43 1 -3.2295 2.7292 -5.0780 44 1 -2.4520 4.0588 -5.9973 45 1 -2.6070 4.0650 -3.2373 46 1 -1.2464 4.8170 -4.1236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989779491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:20 Heat of formation + Delta-G solvation = 15.594564 kcal Electronic energy + Delta-G solvation = -26023.688791 eV Core-core repulsion = 22492.475443 eV Total energy + Delta-G solvation = -3531.213348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.07760 -40.49964 -38.90379 -36.98471 -35.96795 -33.53942 -32.75034 -32.26876 -31.11561 -29.23544 -28.38793 -26.87333 -25.95870 -24.27188 -23.37948 -22.16799 -21.80125 -21.66185 -20.30589 -19.32523 -18.10555 -17.44555 -17.11079 -16.79720 -16.38718 -16.28539 -16.01780 -15.63554 -15.28356 -15.01581 -14.79255 -14.55612 -14.28343 -14.00256 -13.91874 -13.72397 -13.51377 -13.30723 -13.01167 -12.93517 -12.85992 -12.52969 -12.49337 -12.37402 -12.16327 -12.02064 -12.00930 -11.81743 -11.67497 -11.55385 -11.40128 -11.13520 -10.96710 -9.92486 -9.69508 -9.35810 -9.09902 -7.99260 -5.29274 -0.15529 0.39105 1.46068 1.48630 1.54413 1.71568 1.86136 2.53462 2.78667 3.25584 3.36306 3.48646 3.57069 3.64094 3.80743 3.89390 4.01647 4.08324 4.19915 4.20198 4.20962 4.29362 4.36240 4.40984 4.52180 4.67024 4.71882 4.75612 4.79788 4.84270 4.88580 4.96153 4.98552 5.05276 5.10908 5.15148 5.19896 5.22099 5.28686 5.33369 5.36710 5.38409 5.45021 5.50505 5.61222 5.93994 6.22520 6.47231 7.01268 7.30040 8.00667 8.25596 9.23071 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033592 B = 0.002682 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.341671 B =10438.961761 C =10985.265870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.121 3.879 3 H 0.115 0.885 4 C -0.122 4.122 5 C 0.167 3.833 6 H 0.064 0.936 7 N -0.721 5.721 8 C -0.249 4.249 9 H 0.072 0.928 10 C -0.067 4.067 11 N -0.964 5.964 12 Si 0.970 3.030 13 H -0.275 1.275 14 H -0.293 1.293 15 H -0.284 1.284 16 C 0.092 3.908 17 N -0.602 5.602 18 C 0.562 3.438 19 O -0.595 6.595 20 C -0.157 4.157 21 C -0.095 4.095 22 C -0.122 4.122 23 C -0.070 4.070 24 C -0.126 4.126 25 C -0.068 4.068 26 C -0.085 4.085 27 C -0.116 4.116 28 C -0.083 4.083 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.379 0.621 35 H 0.253 0.747 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.175 0.825 39 H 0.161 0.839 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 23.406 -10.559 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.019 3.981 3 H 0.132 0.868 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.082 0.918 7 N -0.360 5.360 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.260 4.260 11 N -0.613 5.613 12 Si 0.799 3.201 13 H -0.201 1.201 14 H -0.219 1.219 15 H -0.210 1.210 16 C -0.034 4.034 17 N -0.334 5.334 18 C 0.354 3.646 19 O -0.478 6.478 20 C -0.160 4.160 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.070 4.070 24 C -0.126 4.126 25 C -0.087 4.087 26 C -0.122 4.122 27 C -0.153 4.153 28 C -0.120 4.120 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.212 0.788 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.192 0.808 39 H 0.178 0.822 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.018 23.056 -11.093 30.186 hybrid contribution 1.163 -1.800 -0.065 2.143 sum -14.856 21.257 -11.158 28.232 Atomic orbital electron populations 1.22857 0.92898 1.03813 1.04042 1.22260 0.95810 0.96590 0.83425 0.86762 1.22988 0.96739 0.99600 0.96702 1.21454 0.96572 0.88254 0.88112 0.91849 1.42392 1.12987 1.29006 1.51658 1.19539 0.91082 1.06444 1.21048 0.90976 1.25514 1.01337 0.99407 0.99766 1.69785 1.34222 1.24580 1.32722 0.85275 0.80000 0.77759 0.77101 1.20065 1.21882 1.21038 1.23022 0.93996 0.87790 0.98639 1.48518 1.51408 1.28261 1.05226 1.18595 0.81315 0.83663 0.81033 1.90718 1.52796 1.57649 1.46641 1.19571 1.02268 0.98037 0.96094 1.22647 0.95826 0.92344 1.00452 1.20942 0.98084 0.98390 0.96574 1.21341 0.96367 0.96035 0.93304 1.20788 0.98238 0.95181 0.98373 1.20665 0.95637 0.97421 0.95007 1.21151 0.97434 1.00288 0.93298 1.22328 0.97176 0.98666 0.97108 1.21219 0.97403 0.96385 0.96954 0.92944 0.87293 0.90843 0.90346 0.87348 0.78787 0.93815 0.93837 0.93523 0.80816 0.82155 0.87280 0.89584 0.90708 0.90563 0.88430 0.88632 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 7.78 71.98 0.56 -2.84 16 2 C 0.12 2.86 2.75 45.34 0.12 2.99 16 3 H 0.12 2.06 6.19 -2.39 -0.01 2.05 16 4 C -0.12 -3.35 6.10 31.78 0.19 -3.16 16 5 C 0.17 6.44 3.69 46.38 0.17 6.61 16 6 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 7 N -0.72 -35.48 5.28 -316.37 -1.67 -37.15 16 8 C -0.25 -13.81 9.98 84.03 0.84 -12.97 16 9 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 10 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 11 N -0.96 -58.06 13.06 21.65 0.28 -57.78 16 12 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 15 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 16 C 0.09 3.71 6.63 86.86 0.58 4.29 16 17 N -0.60 -20.12 3.06 -791.43 -2.43 -22.55 16 18 C 0.56 20.40 7.61 86.79 0.66 21.07 16 19 O -0.60 -26.94 16.70 -3.90 -0.07 -27.01 16 20 C -0.16 -4.39 5.06 -20.12 -0.10 -4.49 16 21 C -0.10 -1.88 6.23 22.49 0.14 -1.74 16 22 C -0.12 -1.84 10.02 22.27 0.22 -1.62 16 23 C -0.07 -1.11 6.14 -19.50 -0.12 -1.23 16 24 C -0.13 -2.54 6.12 -19.61 -0.12 -2.66 16 25 C -0.07 -1.84 9.59 22.56 0.22 -1.62 16 26 C -0.08 -1.19 6.77 30.52 0.21 -0.98 16 27 C -0.12 -1.00 7.08 31.50 0.22 -0.78 16 28 C -0.08 -0.75 6.77 30.53 0.21 -0.54 16 29 H 0.05 1.15 7.70 -2.39 -0.02 1.13 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.53 4.28 -2.39 -0.01 1.52 16 32 H 0.08 2.24 7.43 -2.38 -0.02 2.22 16 33 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.38 19.66 7.71 -92.71 -0.71 18.95 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.04 1.97 7.98 -2.39 -0.02 1.96 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.18 2.83 2.60 -2.91 -0.01 2.83 16 39 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.11 3.26 7.74 -2.91 -0.02 3.24 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -74.25 360.01 2.90 -71.35 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.28 Total: 27.78 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 4.47 Total: -3.06 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.81 Total: -117.47 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.07 Total: -27.01 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -74.25 2.90 -71.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989779491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.943 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds