Wall clock time and date at job start Tue Mar 31 2020 12:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.87323 * 2 1 4 4 C 1.54317 * 109.88211 * 238.98593 * 2 1 3 5 5 C 1.55157 * 102.94277 * 218.39128 * 4 2 1 6 6 H 1.09003 * 111.00994 * 153.61200 * 5 4 2 7 7 N 1.46508 * 111.00262 * 277.42537 * 5 4 2 8 8 C 1.36934 * 119.99941 * 204.99463 * 7 5 4 9 9 H 1.08000 * 119.99811 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99971 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99833 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00238 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47358 * 180.02562 * 12 10 8 14 14 H 1.48498 * 109.47076 * 300.00191 * 12 10 8 15 15 H 1.48500 * 109.47132 * 60.00169 * 12 10 8 16 16 C 1.54914 * 101.58387 * 35.49956 * 5 4 2 17 17 N 1.47022 * 109.88240 * 121.17434 * 2 1 3 18 18 C 1.34772 * 125.64707 * 298.40707 * 17 2 1 19 19 O 1.21557 * 120.00183 * 354.18332 * 18 17 2 20 20 C 1.47845 * 119.99855 * 174.19285 * 18 17 2 21 21 C 1.39593 * 120.14361 * 335.24047 * 20 18 17 22 22 C 1.37936 * 119.85765 * 179.79381 * 21 20 18 23 23 C 1.38390 * 120.13901 * 0.48961 * 22 21 20 24 24 C 1.38329 * 120.29517 * 359.74369 * 23 22 21 25 25 C 1.50696 * 119.92999 * 179.97438 * 24 23 22 26 26 C 1.53003 * 117.49863 * 8.77153 * 25 24 23 27 27 C 1.52999 * 117.50367 * 300.11312 * 25 24 23 28 28 C 1.37982 * 120.14582 * 0.02562 * 24 23 22 29 29 H 1.08998 * 109.47259 * 181.01422 * 1 2 3 30 30 H 1.09004 * 109.46689 * 301.01902 * 1 2 3 31 31 H 1.09005 * 109.46983 * 61.01346 * 1 2 3 32 32 H 1.08999 * 110.72670 * 100.02589 * 4 2 1 33 33 H 1.09008 * 110.87411 * 336.82295 * 4 2 1 34 34 H 0.97002 * 119.99850 * 24.99980 * 7 5 4 35 35 H 0.97000 * 120.00391 * 0.02562 * 11 10 8 36 36 H 1.09000 * 110.36417 * 81.82646 * 16 5 4 37 37 H 1.08997 * 110.36969 * 204.15964 * 16 5 4 38 38 H 1.08005 * 120.07241 * 0.02562 * 21 20 18 39 39 H 1.07992 * 119.93497 * 180.25681 * 22 21 20 40 40 H 1.07999 * 119.84903 * 179.76315 * 23 22 21 41 41 H 1.09003 * 115.55148 * 154.43599 * 25 24 23 42 42 H 1.09001 * 117.49686 * 359.97438 * 26 25 24 43 43 H 1.09002 * 117.50127 * 145.01408 * 26 25 24 44 44 H 1.08994 * 117.50363 * 214.98177 * 27 25 24 45 45 H 1.09003 * 117.49452 * 359.97324 * 27 25 24 46 46 H 1.07994 * 120.07837 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 6 3.2876 -1.5133 -0.6945 6 1 3.4856 -2.4089 -1.2833 7 7 4.4675 -0.6459 -0.6503 8 6 5.7217 -1.1930 -0.7003 9 1 5.8412 -2.2639 -0.7727 10 6 6.8396 -0.3712 -0.6589 11 7 6.6939 0.9340 -0.5712 12 14 8.5507 -1.1174 -0.7279 13 1 9.5656 -0.0351 -0.6675 14 1 8.7372 -2.0351 0.4246 15 1 8.7094 -1.8755 -1.9949 16 6 2.8145 -1.8805 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.8072 -0.3655 2.4652 19 8 1.2325 0.6748 2.7200 20 6 2.2620 -1.2467 3.5618 21 6 2.4380 -2.6130 3.3360 22 6 2.8667 -3.4289 4.3622 23 6 3.1123 -2.8975 5.6162 24 6 2.9351 -1.5453 5.8479 25 6 3.2045 -0.9754 7.2167 26 6 3.8638 -1.8942 8.2473 27 6 2.3845 -1.5260 8.3852 28 6 2.5113 -0.7172 4.8287 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3633 0.5296 0.8808 31 1 -0.3633 0.4980 -0.8990 32 1 2.3529 -0.0432 -2.0201 33 1 1.3064 -1.4436 -1.6231 34 1 4.3601 0.3160 -0.5855 35 1 5.8055 1.3216 -0.5350 36 1 2.1886 -2.7725 0.7090 37 1 3.6716 -2.0357 1.3895 38 1 2.2427 -3.0296 2.3589 39 1 3.0073 -4.4854 4.1878 40 1 3.4440 -3.5413 6.4173 41 1 3.4699 0.0815 7.2420 42 1 4.1024 -2.9109 7.9353 43 1 4.5627 -1.4417 8.9508 44 1 2.1106 -0.8315 9.1793 45 1 1.6498 -2.3002 8.1637 46 1 2.3730 0.3382 5.0110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989834727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:15 Heat of formation + Delta-G solvation = 17.967803 kcal Electronic energy + Delta-G solvation = -26336.793150 eV Core-core repulsion = 22805.682713 eV Total energy + Delta-G solvation = -3531.110437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72460 -40.30257 -38.85634 -37.53502 -36.17147 -33.53016 -33.09737 -32.07361 -31.14626 -29.96262 -27.05805 -25.72077 -25.36854 -24.60340 -23.38062 -22.91592 -21.85078 -21.48799 -20.03095 -19.46522 -18.25682 -17.79560 -17.35365 -16.85803 -16.58217 -16.34787 -15.78888 -15.69947 -15.43610 -15.07300 -14.92140 -14.76068 -14.44529 -14.30501 -13.82009 -13.69118 -13.35719 -13.18285 -13.12767 -12.84428 -12.77091 -12.57125 -12.29287 -12.23259 -12.14773 -11.93835 -11.85637 -11.73504 -11.63144 -11.37653 -11.21461 -11.09099 -10.89565 -10.05983 -9.73454 -9.57709 -9.09115 -8.37656 -5.32851 -0.15378 0.30472 1.58681 1.67320 1.68797 1.84030 1.93514 2.65354 2.72242 3.10206 3.31186 3.38403 3.54803 3.64558 3.74472 3.80274 3.88997 3.91969 3.97586 4.06434 4.12682 4.17019 4.26220 4.33118 4.36080 4.49975 4.57595 4.61950 4.64730 4.75748 4.83032 4.85266 4.88593 4.99698 5.03629 5.07495 5.08298 5.10265 5.23370 5.23723 5.29777 5.37261 5.45035 5.52337 5.63121 5.89096 6.44382 6.47355 7.01675 7.07143 7.96464 8.11314 9.13174 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.004472 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.048482 B = 6259.638848 C = 8031.648105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.131 3.869 3 H 0.037 0.963 4 C -0.123 4.123 5 C 0.160 3.840 6 H 0.092 0.908 7 N -0.738 5.738 8 C -0.325 4.325 9 H 0.079 0.921 10 C -0.107 4.107 11 N -0.979 5.979 12 Si 1.126 2.874 13 H -0.301 1.301 14 H -0.278 1.278 15 H -0.272 1.272 16 C 0.076 3.924 17 N -0.595 5.595 18 C 0.562 3.438 19 O -0.588 6.588 20 C -0.145 4.145 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.097 4.097 24 C -0.062 4.062 25 C -0.146 4.146 26 C -0.162 4.162 27 C -0.158 4.158 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.354 0.646 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.150 0.850 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 -13.259 11.565 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.028 3.972 3 H 0.056 0.944 4 C -0.161 4.161 5 C 0.050 3.950 6 H 0.110 0.890 7 N -0.378 5.378 8 C -0.457 4.457 9 H 0.097 0.903 10 C -0.297 4.297 11 N -0.627 5.627 12 Si 0.950 3.050 13 H -0.227 1.227 14 H -0.204 1.204 15 H -0.198 1.198 16 C -0.049 4.049 17 N -0.326 5.326 18 C 0.353 3.647 19 O -0.471 6.471 20 C -0.148 4.148 21 C -0.121 4.121 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.062 4.062 25 C -0.164 4.164 26 C -0.199 4.199 27 C -0.195 4.195 28 C -0.103 4.103 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.186 0.814 35 H 0.050 0.950 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.103 -12.612 11.706 19.954 hybrid contribution -1.560 1.085 -0.070 1.902 sum -11.663 -11.527 11.636 20.107 Atomic orbital electron populations 1.22020 0.92975 1.03002 1.02418 1.21591 0.95463 0.95158 0.85014 0.94448 1.23031 0.97749 1.00143 0.95225 1.21664 0.85884 0.94442 0.93056 0.88983 1.42577 1.02017 1.04579 1.88644 1.20431 0.85643 0.93846 1.45738 0.90325 1.27160 1.06694 0.95125 1.00768 1.71003 1.23542 1.11860 1.56335 0.82662 0.71057 0.73907 0.77324 1.22717 1.20370 1.19774 1.23578 0.94422 0.88000 0.98890 1.48397 1.50990 1.28920 1.04278 1.18456 0.78772 0.85050 0.82411 1.90682 1.45815 1.26458 1.84123 1.19873 1.06050 0.95153 0.93725 1.21993 0.97082 0.91661 1.01349 1.21500 0.98475 1.01439 0.92126 1.21590 0.97507 0.94218 0.98199 1.19260 0.99016 0.93926 0.93987 1.21038 1.08447 0.99367 0.87515 1.23211 0.95837 1.00485 1.00322 1.23118 0.94666 1.03438 0.98295 1.21006 0.97646 0.99933 0.91709 0.90729 0.94231 0.89542 0.90680 0.86350 0.81443 0.95040 0.87869 0.91913 0.83289 0.81853 0.82541 0.87708 0.87160 0.87221 0.87302 0.88172 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.10 71.98 0.66 -3.30 16 2 C 0.13 4.32 3.42 45.34 0.16 4.48 16 3 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 4 C -0.12 -3.54 6.07 31.78 0.19 -3.35 16 5 C 0.16 5.60 3.72 46.38 0.17 5.78 16 6 H 0.09 2.98 8.09 -2.39 -0.02 2.96 16 7 N -0.74 -35.66 5.23 -316.35 -1.66 -37.31 16 8 C -0.33 -17.44 9.96 84.03 0.84 -16.60 16 9 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 10 C -0.11 -6.13 5.50 84.86 0.47 -5.66 16 11 N -0.98 -62.40 13.70 21.65 0.30 -62.10 16 12 Si 1.13 51.26 29.92 68.60 2.05 53.31 16 13 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 14 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 16 C 0.08 2.41 4.69 86.86 0.41 2.82 16 17 N -0.59 -21.12 3.06 -791.42 -2.43 -23.54 16 18 C 0.56 22.29 7.39 86.79 0.64 22.93 16 19 O -0.59 -26.98 15.88 -3.90 -0.06 -27.04 16 20 C -0.15 -4.97 5.67 -20.09 -0.11 -5.09 16 21 C -0.10 -2.76 8.08 22.53 0.18 -2.58 16 22 C -0.12 -2.50 10.03 22.23 0.22 -2.27 16 23 C -0.10 -2.04 9.29 22.33 0.21 -1.84 16 24 C -0.06 -1.59 5.61 -19.90 -0.11 -1.71 16 25 C -0.15 -3.05 6.03 -11.54 -0.07 -3.12 16 26 C -0.16 -2.39 9.86 30.62 0.30 -2.09 16 27 C -0.16 -2.44 10.16 30.62 0.31 -2.12 16 28 C -0.08 -2.76 9.28 22.53 0.21 -2.56 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.27 7.10 -2.38 -0.02 1.25 16 31 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.12 2.47 7.86 -2.38 -0.02 2.45 16 34 H 0.35 18.98 6.70 -92.71 -0.62 18.36 16 35 H 0.24 15.47 6.77 -92.71 -0.63 14.84 16 36 H 0.10 2.40 6.82 -2.39 -0.02 2.38 16 37 H 0.06 2.32 6.85 -2.39 -0.02 2.30 16 38 H 0.15 3.51 4.62 -2.91 -0.01 3.50 16 39 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.16 2.23 6.01 -2.91 -0.02 2.21 16 41 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.11 1.36 6.17 -2.39 -0.01 1.34 16 43 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.11 3.91 7.84 -2.91 -0.02 3.89 16 Total: -1.00 -76.05 368.82 3.39 -72.67 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: 0.51 Total: 40.29 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.67 Total: -16.27 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -3.78 Total: -122.96 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.06 Total: -27.04 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.05 Total: 53.31 kcal Total: -76.05 3.39 -72.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989834727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.634 kcal (2) G-P(sol) polarization free energy of solvation -76.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds