Wall clock time and date at job start Tue Mar 31 2020 12:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87072 * 2 1 4 4 C 1.54322 * 109.87829 * 121.01079 * 2 1 3 5 5 C 1.55163 * 102.93963 * 141.61490 * 4 2 1 6 6 H 1.08998 * 111.00705 * 82.56413 * 5 4 2 7 7 N 1.46494 * 111.00204 * 206.42409 * 5 4 2 8 8 C 1.36942 * 120.00173 * 204.99641 * 7 5 4 9 9 H 1.08000 * 119.99662 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00441 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99915 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00022 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47317 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47226 * 120.00390 * 12 10 8 15 15 H 1.48503 * 109.47276 * 240.00141 * 12 10 8 16 16 C 1.54909 * 101.57872 * 324.49185 * 5 4 2 17 17 N 1.47020 * 109.88091 * 238.97970 * 2 1 3 18 18 C 1.34773 * 125.64800 * 61.60865 * 17 2 1 19 19 O 1.21559 * 120.00049 * 184.78927 * 18 17 2 20 20 C 1.47844 * 120.00341 * 4.79157 * 18 17 2 21 21 C 1.39495 * 120.03998 * 4.55440 * 20 18 17 22 22 C 1.37929 * 119.77047 * 179.65091 * 21 20 18 23 23 C 1.38262 * 120.09318 * 0.66876 * 22 21 20 24 24 C 1.38615 * 120.52503 * 359.62027 * 23 22 21 25 25 C 1.37977 * 119.93663 * 0.03750 * 24 23 22 26 26 C 1.51347 * 109.83347 * 179.97438 * 25 24 23 27 27 C 1.54354 * 105.15056 * 342.83837 * 26 25 24 28 28 C 1.51402 * 130.30729 * 180.02562 * 24 23 22 29 29 H 1.09003 * 109.47265 * 294.54949 * 1 2 3 30 30 H 1.09002 * 109.47064 * 174.55193 * 1 2 3 31 31 H 1.09001 * 109.47271 * 54.55077 * 1 2 3 32 32 H 1.08998 * 110.72024 * 259.97212 * 4 2 1 33 33 H 1.08993 * 110.72287 * 23.24831 * 4 2 1 34 34 H 0.96996 * 120.00415 * 24.99595 * 7 5 4 35 35 H 0.97000 * 120.00124 * 179.97438 * 11 10 8 36 36 H 1.09003 * 110.36570 * 155.85009 * 16 5 4 37 37 H 1.08998 * 110.37018 * 278.06542 * 16 5 4 38 38 H 1.08007 * 120.11591 * 359.97438 * 21 20 18 39 39 H 1.07994 * 119.96060 * 180.31948 * 22 21 20 40 40 H 1.07995 * 119.73714 * 179.64934 * 23 22 21 41 41 H 1.09000 * 110.30659 * 101.75607 * 26 25 24 42 42 H 1.08995 * 110.31277 * 223.91550 * 26 25 24 43 43 H 1.08994 * 110.83284 * 268.08343 * 27 26 25 44 44 H 1.09005 * 110.99782 * 144.59502 * 27 26 25 45 45 H 1.08998 * 110.30185 * 316.13067 * 28 24 23 46 46 H 1.09005 * 110.29710 * 78.17722 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 3.2876 -1.5132 0.6947 6 1 4.1654 -0.8678 0.6616 7 7 3.5531 -2.7173 1.4856 8 6 4.8164 -3.2442 1.5277 9 1 5.6171 -2.7718 0.9780 10 6 5.0682 -4.3849 2.2776 11 7 4.0925 -4.9604 2.9479 12 14 6.7912 -5.1040 2.3342 13 1 7.7004 -4.2769 1.5009 14 1 7.2779 -5.1133 3.7371 15 1 6.7654 -6.4932 1.8101 16 6 2.8145 -1.8805 -0.7339 17 7 2.0300 -0.7125 -1.1848 18 6 1.8074 -0.3588 -2.4661 19 8 2.1976 -1.0717 -3.3701 20 6 1.0887 0.8964 -2.7724 21 6 0.7243 1.7620 -1.7409 22 6 0.0603 2.9350 -2.0335 23 6 -0.2550 3.2448 -3.3436 24 6 0.0978 2.3877 -4.3743 25 6 0.7685 1.2146 -4.0952 26 6 1.0372 0.4590 -5.3787 27 6 0.0803 1.0784 -6.4195 28 6 -0.1314 2.5036 -5.8663 29 1 -0.3634 0.4270 0.9348 30 1 -0.3633 -1.0230 -0.0976 31 1 -0.3634 0.5960 -0.8372 32 1 2.3528 -0.0430 2.0201 33 1 1.3051 -1.4435 1.6203 34 1 2.8342 -3.1414 1.9797 35 1 4.2683 -5.7577 3.4716 36 1 3.6717 -2.0359 -1.3892 37 1 2.1902 -2.7736 -0.7089 38 1 0.9658 1.5170 -0.7171 39 1 -0.2187 3.6097 -1.2379 40 1 -0.7800 4.1620 -3.5656 41 1 2.0732 0.5961 -5.6886 42 1 0.8182 -0.6006 -5.2469 43 1 -0.8620 0.5318 -6.4532 44 1 0.5435 1.1102 -7.4057 45 1 -1.1483 2.8404 -6.0677 46 1 0.5889 3.1930 -6.3071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989847070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:37 Heat of formation + Delta-G solvation = 41.515751 kcal Electronic energy + Delta-G solvation = -26366.314441 eV Core-core repulsion = 22836.225119 eV Total energy + Delta-G solvation = -3530.089321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02116 -39.33267 -37.42048 -36.04535 -34.36342 -32.26623 -31.37890 -31.11724 -29.26730 -28.55796 -27.15774 -25.80521 -24.21283 -23.30571 -21.92580 -21.36153 -21.11627 -20.07560 -19.02374 -17.45344 -16.83605 -16.25918 -16.10619 -15.74525 -15.24668 -15.03915 -14.57321 -14.24761 -14.16158 -13.61618 -13.32768 -13.19701 -12.97300 -12.91924 -12.78769 -12.59349 -12.29534 -12.12203 -11.93320 -11.79161 -11.45512 -11.32678 -11.26399 -11.10155 -10.97903 -10.84907 -10.78533 -10.50248 -10.26925 -10.03218 -9.79187 -9.58113 -9.02857 -8.93348 -8.56571 -8.31627 -7.09838 -5.85613 -3.16355 0.82223 1.21316 2.95559 3.18059 3.40262 3.46853 3.48531 3.77919 4.20517 4.40775 4.50446 4.57167 4.67819 4.81544 4.84960 4.92452 4.97270 5.03129 5.11036 5.22812 5.34559 5.40163 5.50046 5.57944 5.61188 5.63547 5.65393 5.68536 5.73002 5.79069 5.91814 5.95256 6.02870 6.08016 6.09250 6.16296 6.21360 6.26912 6.29492 6.38198 6.42388 6.53649 6.63357 6.77713 6.86525 7.64912 7.79769 8.31676 8.39942 9.44100 9.96831 10.31749 11.36441 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.003027 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.998890 B = 9246.715406 C =10020.844157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.117 3.883 3 H 0.088 0.912 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.710 5.710 8 C -0.248 4.248 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.930 5.930 12 Si 0.909 3.091 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.290 1.290 16 C 0.083 3.917 17 N -0.604 5.604 18 C 0.567 3.433 19 O -0.540 6.540 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.085 4.085 24 C -0.118 4.118 25 C -0.032 4.032 26 C -0.080 4.080 27 C -0.124 4.124 28 C -0.079 4.079 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.175 0.825 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.845 18.449 -12.050 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.013 3.987 3 H 0.105 0.895 4 C -0.176 4.176 5 C 0.059 3.941 6 H 0.086 0.914 7 N -0.350 5.350 8 C -0.379 4.379 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.217 1.217 16 C -0.042 4.042 17 N -0.337 5.337 18 C 0.357 3.643 19 O -0.419 6.419 20 C -0.125 4.125 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.103 4.103 24 C -0.118 4.118 25 C -0.033 4.033 26 C -0.117 4.117 27 C -0.161 4.161 28 C -0.116 4.116 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.222 0.778 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.191 0.809 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.434 17.992 -12.587 24.756 hybrid contribution 0.572 -0.572 0.307 0.866 sum -10.862 17.420 -12.279 23.921 Atomic orbital electron populations 1.22912 0.94966 1.03758 1.03202 1.21984 0.94222 0.96156 0.86300 0.89476 1.23046 0.99445 0.99754 0.95314 1.21311 0.94535 0.89589 0.88619 0.91369 1.42305 1.09656 1.27926 1.55096 1.19315 0.86789 1.07038 1.24731 0.90857 1.24770 0.97739 0.98242 0.99775 1.69668 1.30785 1.22363 1.34905 0.86098 0.83781 0.78919 0.77268 1.20411 1.21770 1.21737 1.23487 0.94716 0.87201 0.98755 1.48559 1.52030 1.28982 1.04162 1.17983 0.79702 0.85174 0.81476 1.90741 1.52478 1.53904 1.44737 1.19558 1.03591 0.96349 0.92991 1.23029 0.95858 0.93208 1.01867 1.21009 1.01013 0.97373 0.96313 1.20806 0.98693 0.98664 0.92119 1.20573 1.00298 0.95213 0.95721 1.20593 0.94375 0.94979 0.93375 1.21089 1.00067 1.00394 0.90146 1.22359 0.99963 0.95131 0.98650 1.21031 1.02008 0.98048 0.90490 0.90920 0.91593 0.90319 0.90065 0.90163 0.77844 0.93384 0.91043 0.91440 0.80864 0.85386 0.86172 0.89775 0.89434 0.91033 0.90498 0.90835 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 8.15 37.16 0.30 -1.80 16 2 C 0.12 1.50 2.69 -66.95 -0.18 1.32 16 3 H 0.09 0.96 5.92 -51.93 -0.31 0.66 16 4 C -0.14 -1.99 6.12 -24.89 -0.15 -2.15 16 5 C 0.17 3.26 3.71 -65.78 -0.24 3.01 16 6 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.71 -17.01 5.24 -51.35 -0.27 -17.28 16 8 C -0.25 -6.68 9.96 -15.06 -0.15 -6.83 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 11 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 12 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 C 0.08 1.58 6.61 -2.35 -0.02 1.57 16 17 N -0.60 -9.83 3.08 -166.63 -0.51 -10.34 16 18 C 0.57 9.75 7.62 -12.33 -0.09 9.65 16 19 O -0.54 -10.89 15.09 5.31 0.08 -10.81 16 20 C -0.12 -1.73 5.60 -104.92 -0.59 -2.32 16 21 C -0.12 -1.40 6.18 -39.23 -0.24 -1.64 16 22 C -0.14 -1.32 10.03 -39.69 -0.40 -1.72 16 23 C -0.08 -0.81 10.03 -39.43 -0.40 -1.20 16 24 C -0.12 -1.28 6.13 -104.23 -0.64 -1.92 16 25 C -0.03 -0.43 6.03 -103.83 -0.63 -1.05 16 26 C -0.08 -0.99 5.53 -26.86 -0.15 -1.14 16 27 C -0.12 -1.10 7.08 -25.32 -0.18 -1.28 16 28 C -0.08 -0.66 6.77 -26.84 -0.18 -0.84 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.86 4.32 -51.93 -0.22 0.63 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.20 7.71 -51.93 -0.40 0.80 16 34 H 0.39 9.79 7.76 -40.82 -0.32 9.47 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.18 1.78 2.12 -56.23 -0.12 1.66 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.23 7.30 -51.93 -0.38 0.85 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -31.70 357.95 -10.42 -42.12 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.78 Total: 9.18 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -4.03 Total: -8.67 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.06 Total: -54.27 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.70 -10.42 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989847070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.639 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds