Wall clock time and date at job start Tue Mar 31 2020 12:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87072 * 2 1 4 4 C 1.54322 * 109.87829 * 121.01079 * 2 1 3 5 5 C 1.55163 * 102.93963 * 141.61490 * 4 2 1 6 6 H 1.08998 * 111.00705 * 82.56413 * 5 4 2 7 7 N 1.46494 * 111.00204 * 206.42409 * 5 4 2 8 8 C 1.36942 * 120.00173 * 204.99641 * 7 5 4 9 9 H 1.08000 * 119.99662 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00441 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99915 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00022 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47317 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47226 * 120.00390 * 12 10 8 15 15 H 1.48503 * 109.47276 * 240.00141 * 12 10 8 16 16 C 1.54909 * 101.57872 * 324.49185 * 5 4 2 17 17 N 1.47020 * 109.88091 * 238.97970 * 2 1 3 18 18 C 1.34773 * 125.64800 * 61.60865 * 17 2 1 19 19 O 1.21559 * 120.00049 * 184.78927 * 18 17 2 20 20 C 1.47844 * 120.00341 * 4.79157 * 18 17 2 21 21 C 1.39495 * 120.03998 * 4.55440 * 20 18 17 22 22 C 1.37929 * 119.77047 * 179.65091 * 21 20 18 23 23 C 1.38262 * 120.09318 * 0.66876 * 22 21 20 24 24 C 1.38615 * 120.52503 * 359.62027 * 23 22 21 25 25 C 1.37977 * 119.93663 * 0.03750 * 24 23 22 26 26 C 1.51347 * 109.83347 * 179.97438 * 25 24 23 27 27 C 1.54354 * 105.15056 * 342.83837 * 26 25 24 28 28 C 1.51402 * 130.30729 * 180.02562 * 24 23 22 29 29 H 1.09003 * 109.47265 * 294.54949 * 1 2 3 30 30 H 1.09002 * 109.47064 * 174.55193 * 1 2 3 31 31 H 1.09001 * 109.47271 * 54.55077 * 1 2 3 32 32 H 1.08998 * 110.72024 * 259.97212 * 4 2 1 33 33 H 1.08993 * 110.72287 * 23.24831 * 4 2 1 34 34 H 0.96996 * 120.00415 * 24.99595 * 7 5 4 35 35 H 0.97000 * 120.00124 * 179.97438 * 11 10 8 36 36 H 1.09003 * 110.36570 * 155.85009 * 16 5 4 37 37 H 1.08998 * 110.37018 * 278.06542 * 16 5 4 38 38 H 1.08007 * 120.11591 * 359.97438 * 21 20 18 39 39 H 1.07994 * 119.96060 * 180.31948 * 22 21 20 40 40 H 1.07995 * 119.73714 * 179.64934 * 23 22 21 41 41 H 1.09000 * 110.30659 * 101.75607 * 26 25 24 42 42 H 1.08995 * 110.31277 * 223.91550 * 26 25 24 43 43 H 1.08994 * 110.83284 * 268.08343 * 27 26 25 44 44 H 1.09005 * 110.99782 * 144.59502 * 27 26 25 45 45 H 1.08998 * 110.30185 * 316.13067 * 28 24 23 46 46 H 1.09005 * 110.29710 * 78.17722 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 3.2876 -1.5132 0.6947 6 1 4.1654 -0.8678 0.6616 7 7 3.5531 -2.7173 1.4856 8 6 4.8164 -3.2442 1.5277 9 1 5.6171 -2.7718 0.9780 10 6 5.0682 -4.3849 2.2776 11 7 4.0925 -4.9604 2.9479 12 14 6.7912 -5.1040 2.3342 13 1 7.7004 -4.2769 1.5009 14 1 7.2779 -5.1133 3.7371 15 1 6.7654 -6.4932 1.8101 16 6 2.8145 -1.8805 -0.7339 17 7 2.0300 -0.7125 -1.1848 18 6 1.8074 -0.3588 -2.4661 19 8 2.1976 -1.0717 -3.3701 20 6 1.0887 0.8964 -2.7724 21 6 0.7243 1.7620 -1.7409 22 6 0.0603 2.9350 -2.0335 23 6 -0.2550 3.2448 -3.3436 24 6 0.0978 2.3877 -4.3743 25 6 0.7685 1.2146 -4.0952 26 6 1.0372 0.4590 -5.3787 27 6 0.0803 1.0784 -6.4195 28 6 -0.1314 2.5036 -5.8663 29 1 -0.3634 0.4270 0.9348 30 1 -0.3633 -1.0230 -0.0976 31 1 -0.3634 0.5960 -0.8372 32 1 2.3528 -0.0430 2.0201 33 1 1.3051 -1.4435 1.6203 34 1 2.8342 -3.1414 1.9797 35 1 4.2683 -5.7577 3.4716 36 1 3.6717 -2.0359 -1.3892 37 1 2.1902 -2.7736 -0.7089 38 1 0.9658 1.5170 -0.7171 39 1 -0.2187 3.6097 -1.2379 40 1 -0.7800 4.1620 -3.5656 41 1 2.0732 0.5961 -5.6886 42 1 0.8182 -0.6006 -5.2469 43 1 -0.8620 0.5318 -6.4532 44 1 0.5435 1.1102 -7.4057 45 1 -1.1483 2.8404 -6.0677 46 1 0.5889 3.1930 -6.3071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989847070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:36 Heat of formation + Delta-G solvation = 23.017678 kcal Electronic energy + Delta-G solvation = -26367.116577 eV Core-core repulsion = 22836.225119 eV Total energy + Delta-G solvation = -3530.891458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09493 -40.38899 -38.79698 -37.06018 -35.96445 -33.72768 -32.72530 -32.32410 -30.50175 -29.68641 -28.11033 -27.05349 -25.92512 -24.58534 -22.96800 -22.42748 -21.99181 -21.43289 -20.20003 -19.34782 -18.02523 -17.41637 -17.19054 -16.85426 -16.44973 -16.20697 -16.01676 -15.56019 -15.35840 -14.97636 -14.85874 -14.33586 -14.23279 -13.96219 -13.85390 -13.75016 -13.51625 -13.27951 -12.97883 -12.89514 -12.82060 -12.68447 -12.40458 -12.31452 -12.18273 -12.10003 -12.04692 -11.87252 -11.73059 -11.49617 -11.44010 -11.06950 -10.83668 -9.94046 -9.60598 -9.37127 -9.10468 -7.99702 -5.29764 -0.11490 0.39542 1.45786 1.47230 1.56642 1.82792 1.88567 2.53302 2.82747 3.28305 3.36215 3.48375 3.56689 3.65870 3.82980 3.89539 4.05265 4.13119 4.14306 4.18764 4.21631 4.30161 4.37486 4.39649 4.54032 4.58314 4.71808 4.76178 4.79773 4.82815 4.87952 4.92709 5.00163 5.04075 5.12088 5.14793 5.17089 5.22399 5.28359 5.31981 5.36372 5.41362 5.48630 5.50962 5.61906 5.99441 6.22175 6.51298 7.07263 7.29522 8.00101 8.24726 9.23146 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.003027 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.998890 B = 9246.715406 C =10020.844157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 H 0.119 0.881 4 C -0.124 4.124 5 C 0.167 3.833 6 H 0.068 0.932 7 N -0.721 5.721 8 C -0.248 4.248 9 H 0.075 0.925 10 C -0.068 4.068 11 N -0.964 5.964 12 Si 0.970 3.030 13 H -0.268 1.268 14 H -0.289 1.289 15 H -0.296 1.296 16 C 0.093 3.907 17 N -0.605 5.605 18 C 0.558 3.442 19 O -0.587 6.587 20 C -0.149 4.149 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.078 4.078 24 C -0.120 4.120 25 C -0.063 4.063 26 C -0.084 4.084 27 C -0.117 4.117 28 C -0.074 4.074 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.378 0.622 35 H 0.253 0.747 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.185 0.815 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.365 22.497 -11.979 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.015 3.985 3 H 0.136 0.864 4 C -0.162 4.162 5 C 0.056 3.944 6 H 0.086 0.914 7 N -0.360 5.360 8 C -0.379 4.379 9 H 0.092 0.908 10 C -0.261 4.261 11 N -0.614 5.614 12 Si 0.799 3.201 13 H -0.193 1.193 14 H -0.216 1.216 15 H -0.223 1.223 16 C -0.033 4.033 17 N -0.337 5.337 18 C 0.350 3.650 19 O -0.469 6.469 20 C -0.152 4.152 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.096 4.096 24 C -0.120 4.120 25 C -0.064 4.064 26 C -0.121 4.121 27 C -0.154 4.154 28 C -0.111 4.111 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.211 0.789 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.201 0.799 39 H 0.184 0.816 40 H 0.173 0.827 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.968 22.101 -12.524 28.521 hybrid contribution 1.004 -1.757 0.207 2.034 sum -11.964 20.344 -12.317 26.622 Atomic orbital electron populations 1.22872 0.93050 1.02944 1.05257 1.22276 0.95705 0.96809 0.83687 0.86391 1.22984 0.96886 0.99701 0.96638 1.21456 0.96657 0.88301 0.87958 0.91375 1.42417 1.08478 1.29381 1.55696 1.19645 0.87971 1.06799 1.23501 0.90754 1.25525 1.01201 0.99063 1.00332 1.69802 1.32555 1.22860 1.36203 0.85125 0.79978 0.77748 0.77207 1.19279 1.21553 1.22306 1.23059 0.93786 0.87897 0.98536 1.48604 1.51647 1.28215 1.05233 1.18704 0.79279 0.86056 0.80980 1.90703 1.54503 1.55620 1.46075 1.19473 1.05471 0.95686 0.94530 1.23115 0.95969 0.93492 1.01365 1.21457 0.99196 0.96624 0.97509 1.21280 0.97380 0.99238 0.91655 1.20943 0.99340 0.94260 0.97490 1.20830 0.95837 0.96574 0.93127 1.21076 1.00284 0.98966 0.91785 1.22362 0.99171 0.95577 0.98319 1.21087 1.03755 0.97463 0.88804 0.87550 0.93688 0.89668 0.87368 0.90556 0.78887 0.93844 0.93826 0.93822 0.79932 0.81625 0.82651 0.91230 0.92641 0.90709 0.88857 0.88479 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.61 8.15 71.98 0.59 -3.02 16 2 C 0.12 2.81 2.69 45.34 0.12 2.93 16 3 H 0.12 2.19 5.92 -2.39 -0.01 2.17 16 4 C -0.12 -3.43 6.12 31.78 0.19 -3.23 16 5 C 0.17 6.44 3.71 46.39 0.17 6.61 16 6 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 7 N -0.72 -35.44 5.24 -316.38 -1.66 -37.10 16 8 C -0.25 -13.62 9.96 84.03 0.84 -12.78 16 9 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 10 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 11 N -0.96 -58.18 13.06 21.65 0.28 -57.90 16 12 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 15 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 16 C 0.09 3.77 6.61 86.79 0.57 4.34 16 17 N -0.60 -20.22 3.08 -799.36 -2.46 -22.68 16 18 C 0.56 20.14 7.62 86.79 0.66 20.80 16 19 O -0.59 -25.80 15.09 -3.90 -0.06 -25.86 16 20 C -0.15 -4.18 5.60 -20.06 -0.11 -4.30 16 21 C -0.12 -2.43 6.18 22.50 0.14 -2.30 16 22 C -0.13 -1.84 10.03 22.20 0.22 -1.62 16 23 C -0.08 -1.11 10.03 22.37 0.22 -0.89 16 24 C -0.12 -2.28 6.13 -19.61 -0.12 -2.40 16 25 C -0.06 -1.65 6.03 -19.35 -0.12 -1.77 16 26 C -0.08 -2.19 5.53 30.51 0.17 -2.02 16 27 C -0.12 -1.96 7.08 31.51 0.22 -1.74 16 28 C -0.07 -1.02 6.77 30.53 0.21 -0.82 16 29 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.61 4.32 -2.39 -0.01 1.60 16 32 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.21 7.71 -2.39 -0.02 2.20 16 34 H 0.38 19.73 7.76 -92.71 -0.72 19.01 16 35 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.04 1.95 8.09 -2.39 -0.02 1.93 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.18 3.08 2.12 -6.43 -0.01 3.07 16 39 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.74 7.30 -2.39 -0.02 1.73 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -74.00 357.95 2.86 -71.14 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.27 Total: 29.81 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.45 Total: -5.64 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -3.83 Total: -117.68 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.06 Total: -25.86 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -74.00 2.86 -71.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989847070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.162 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds