Wall clock time and date at job start Tue Mar 31 2020 12:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.00159 * 2 1 4 4 C 1.54324 * 109.88172 * 121.09739 * 2 1 3 5 5 C 1.55161 * 102.94459 * 141.60966 * 4 2 1 6 6 H 1.09005 * 111.00483 * 206.42518 * 5 4 2 7 7 N 1.46495 * 111.00657 * 82.60738 * 5 4 2 8 8 C 1.36936 * 119.99847 * 154.99832 * 7 5 4 9 9 H 1.07999 * 120.00285 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00009 * 180.02562 * 8 7 5 11 11 N 1.31612 * 120.00372 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 119.99610 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46808 * 90.00555 * 12 10 8 14 14 H 1.48502 * 109.46708 * 209.99897 * 12 10 8 15 15 H 1.48492 * 109.47392 * 329.99973 * 12 10 8 16 16 C 1.54916 * 101.57941 * 324.49629 * 5 4 2 17 17 N 1.47029 * 109.88338 * 238.90195 * 2 1 3 18 18 C 1.34773 * 125.64625 * 61.62521 * 17 2 1 19 19 O 1.21544 * 120.00035 * 184.77046 * 18 17 2 20 20 C 1.47843 * 119.99912 * 4.76561 * 18 17 2 21 21 C 1.39495 * 120.04345 * 4.85003 * 20 18 17 22 22 C 1.37938 * 119.76694 * 179.97438 * 21 20 18 23 23 C 1.38255 * 120.09924 * 0.02562 * 22 21 20 24 24 C 1.38616 * 120.52425 * 359.97438 * 23 22 21 25 25 C 1.37981 * 119.93301 * 359.74520 * 24 23 22 26 26 C 1.51351 * 109.82785 * 179.84915 * 25 24 23 27 27 C 1.54352 * 105.21263 * 343.18627 * 26 25 24 28 28 C 1.51401 * 130.30896 * 180.02562 * 24 23 22 29 29 H 1.09006 * 109.46791 * 294.06850 * 1 2 3 30 30 H 1.09000 * 109.46844 * 54.06658 * 1 2 3 31 31 H 1.08998 * 109.47239 * 174.06497 * 1 2 3 32 32 H 1.09000 * 110.72345 * 259.96982 * 4 2 1 33 33 H 1.08998 * 110.72012 * 23.24637 * 4 2 1 34 34 H 0.97000 * 119.99782 * 335.00855 * 7 5 4 35 35 H 0.96995 * 120.00155 * 179.97438 * 11 10 8 36 36 H 1.08997 * 110.36069 * 155.84749 * 16 5 4 37 37 H 1.09000 * 110.36678 * 278.06491 * 16 5 4 38 38 H 1.08002 * 120.11790 * 0.02562 * 21 20 18 39 39 H 1.08001 * 119.94967 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.73677 * 179.97438 * 23 22 21 41 41 H 1.08999 * 110.44383 * 224.16402 * 26 25 24 42 42 H 1.08991 * 110.19366 * 102.08451 * 26 25 24 43 43 H 1.08993 * 110.83532 * 267.88857 * 27 26 25 44 44 H 1.09001 * 110.82918 * 144.31770 * 27 26 25 45 45 H 1.09006 * 110.30061 * 316.08591 * 28 24 23 46 46 H 1.09002 * 110.30496 * 78.13357 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 6 3.2876 -1.5143 0.6924 6 1 3.4851 -2.4112 1.2796 7 7 4.4676 -0.6472 0.6502 8 6 5.7217 -1.1948 0.6997 9 1 5.8409 -2.2659 0.7694 10 6 6.8399 -0.3732 0.6602 11 7 8.0453 -0.8994 0.7073 12 14 6.6337 1.4795 0.5389 13 1 6.5626 2.0601 1.9039 14 1 7.7924 2.0600 -0.1862 15 1 5.3824 1.7911 -0.1975 16 6 2.8144 -1.8795 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8077 -0.3619 -2.4657 19 8 2.1981 -1.0758 -3.3686 20 6 1.0888 0.8928 -2.7735 21 6 0.7293 1.7624 -1.7437 22 6 0.0592 2.9317 -2.0374 23 6 -0.2554 3.2402 -3.3478 24 6 0.0979 2.3819 -4.3774 25 6 0.7735 1.2119 -4.0973 26 6 1.0389 0.4527 -5.3794 27 6 0.0823 1.0705 -6.4213 28 6 -0.1306 2.4962 -5.8697 29 1 -0.3633 0.4191 0.9384 30 1 -0.3633 0.6031 -0.8321 31 1 -0.3633 -1.0221 -0.1063 32 1 2.3529 -0.0461 2.0201 33 1 1.3050 -1.4460 1.6182 34 1 4.3605 0.3148 0.5873 35 1 8.8266 -0.3253 0.6793 36 1 3.6716 -2.0339 -1.3922 37 1 2.1900 -2.7726 -0.7131 38 1 0.9756 1.5213 -0.7201 39 1 -0.2209 3.6069 -1.2423 40 1 -0.7806 4.1571 -3.5711 41 1 0.8204 -0.6068 -5.2467 42 1 2.0749 0.5887 -5.6896 43 1 -0.8597 0.5234 -6.4552 44 1 0.5492 1.1017 -7.4058 45 1 -1.1476 2.8322 -6.0720 46 1 0.5895 3.1855 -6.3109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989847071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:41 Heat of formation + Delta-G solvation = 45.890566 kcal Electronic energy + Delta-G solvation = -27010.803370 eV Core-core repulsion = 23480.903755 eV Total energy + Delta-G solvation = -3529.899615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99847 -39.36233 -37.43610 -36.03325 -34.29609 -32.23093 -31.40600 -31.15975 -29.47753 -28.76404 -27.20702 -25.90631 -24.04612 -23.24819 -22.02605 -21.26842 -21.12999 -19.97913 -19.02017 -17.76812 -16.86260 -16.28270 -16.06373 -15.68597 -15.32407 -14.99861 -14.55489 -14.34494 -14.04355 -13.77059 -13.31613 -13.20396 -12.95317 -12.91206 -12.83410 -12.53976 -12.19557 -12.14566 -11.92762 -11.87343 -11.59250 -11.32314 -11.25670 -11.11882 -11.11089 -10.87664 -10.80178 -10.46209 -10.43777 -10.11611 -9.64279 -9.53323 -9.07059 -8.87439 -8.51526 -8.29852 -7.34490 -5.82331 -3.19260 0.88143 1.26870 3.01623 3.24251 3.33649 3.36625 3.42400 3.83267 4.25398 4.45689 4.54360 4.59051 4.63558 4.81476 4.89504 4.91638 4.97494 5.06955 5.12575 5.20377 5.26676 5.35591 5.40696 5.53730 5.56096 5.61479 5.64933 5.71581 5.73237 5.75722 5.83274 5.96408 5.99735 6.07105 6.11206 6.14165 6.14792 6.24581 6.26628 6.33742 6.42608 6.47629 6.61646 6.73936 6.83885 7.82732 7.92007 8.36246 8.45714 9.13126 9.85563 10.03563 11.35573 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.004274 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.730001 B = 6549.612996 C = 6868.315245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.114 3.886 3 H 0.087 0.913 4 C -0.141 4.141 5 C 0.173 3.827 6 H 0.085 0.915 7 N -0.735 5.735 8 C -0.250 4.250 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.930 5.930 12 Si 0.881 3.119 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.278 1.278 16 C 0.080 3.920 17 N -0.597 5.597 18 C 0.569 3.431 19 O -0.538 6.538 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.084 4.084 24 C -0.118 4.118 25 C -0.032 4.032 26 C -0.080 4.080 27 C -0.123 4.123 28 C -0.079 4.079 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.173 0.827 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.803 7.247 -6.348 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.011 3.989 3 H 0.104 0.896 4 C -0.180 4.180 5 C 0.061 3.939 6 H 0.103 0.897 7 N -0.376 5.376 8 C -0.380 4.380 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.576 5.576 12 Si 0.711 3.289 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.204 1.204 16 C -0.045 4.045 17 N -0.329 5.329 18 C 0.359 3.641 19 O -0.417 6.417 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.103 4.103 24 C -0.118 4.118 25 C -0.033 4.033 26 C -0.117 4.117 27 C -0.160 4.160 28 C -0.116 4.116 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.194 0.806 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.189 0.811 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.357 6.707 -6.881 23.419 hybrid contribution 0.025 1.533 -0.066 1.534 sum -21.331 8.240 -6.947 23.900 Atomic orbital electron populations 1.22898 0.94942 1.03547 1.03296 1.21984 0.93924 0.96518 0.86505 0.89634 1.23125 0.98695 1.00239 0.95894 1.21336 0.85964 0.94450 0.92102 0.89699 1.42667 1.01892 1.04155 1.88917 1.19074 0.81239 0.94187 1.43457 0.88902 1.24652 0.95079 0.97292 1.01574 1.69687 0.96918 1.34214 1.56824 0.86605 0.77129 0.87403 0.77752 1.20927 1.21638 1.20406 1.23284 0.94892 0.86656 0.99692 1.48319 1.51761 1.28720 1.04149 1.17914 0.79596 0.85143 0.81423 1.90731 1.52375 1.53797 1.44767 1.19555 1.03469 0.96394 0.93012 1.22994 0.95790 0.93316 1.01862 1.21001 1.00997 0.97365 0.96344 1.20790 0.98809 0.98569 0.92091 1.20575 1.00256 0.95280 0.95730 1.20583 0.94300 0.95055 0.93325 1.21093 1.00194 1.00272 0.90167 1.22357 0.99859 0.95124 0.98682 1.21030 1.01976 0.98066 0.90478 0.91022 0.90223 0.91716 0.89598 0.90031 0.80571 0.92943 0.89661 0.92410 0.81064 0.85421 0.86168 0.89463 0.89720 0.91053 0.90487 0.90852 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.98 8.17 37.16 0.30 -1.68 16 2 C 0.11 1.53 2.69 -66.95 -0.18 1.35 16 3 H 0.09 1.16 5.91 -51.93 -0.31 0.85 16 4 C -0.14 -1.86 6.08 -24.89 -0.15 -2.01 16 5 C 0.17 3.07 3.72 -65.78 -0.24 2.83 16 6 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 7 N -0.74 -16.64 5.04 -51.34 -0.26 -16.89 16 8 C -0.25 -6.87 10.44 -15.06 -0.16 -7.03 16 9 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 10 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 11 N -0.93 -29.02 13.97 55.49 0.78 -28.25 16 12 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 15 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 16 C 0.08 1.43 6.58 -2.53 -0.02 1.42 16 17 N -0.60 -10.11 3.06 -166.65 -0.51 -10.62 16 18 C 0.57 10.49 7.62 -12.33 -0.09 10.39 16 19 O -0.54 -11.42 15.07 5.33 0.08 -11.34 16 20 C -0.12 -1.90 5.60 -104.92 -0.59 -2.49 16 21 C -0.12 -1.59 6.18 -39.22 -0.24 -1.83 16 22 C -0.14 -1.52 10.03 -39.69 -0.40 -1.92 16 23 C -0.08 -0.91 10.03 -39.44 -0.40 -1.30 16 24 C -0.12 -1.42 6.13 -104.23 -0.64 -2.06 16 25 C -0.03 -0.46 6.03 -103.82 -0.63 -1.09 16 26 C -0.08 -1.08 5.53 -26.86 -0.15 -1.23 16 27 C -0.12 -1.19 7.09 -25.32 -0.18 -1.37 16 28 C -0.08 -0.74 6.77 -26.83 -0.18 -0.92 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.87 4.32 -51.93 -0.22 0.65 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 0.88 7.85 -51.93 -0.41 0.48 16 34 H 0.36 8.16 5.73 -40.82 -0.23 7.92 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.08 1.85 8.08 -51.93 -0.42 1.43 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.17 2.05 2.15 -55.91 -0.12 1.93 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.09 1.28 7.30 -51.93 -0.38 0.90 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -33.62 354.99 -10.07 -43.69 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.75 Total: 9.42 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -4.03 Total: -8.73 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.01 Total: -55.76 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.62 -10.07 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989847071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.577 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds