Wall clock time and date at job start Tue Mar 31 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.00159 * 2 1 4 4 C 1.54324 * 109.88172 * 121.09739 * 2 1 3 5 5 C 1.55161 * 102.94459 * 141.60966 * 4 2 1 6 6 H 1.09005 * 111.00483 * 206.42518 * 5 4 2 7 7 N 1.46495 * 111.00657 * 82.60738 * 5 4 2 8 8 C 1.36936 * 119.99847 * 154.99832 * 7 5 4 9 9 H 1.07999 * 120.00285 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00009 * 180.02562 * 8 7 5 11 11 N 1.31612 * 120.00372 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 119.99610 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46808 * 90.00555 * 12 10 8 14 14 H 1.48502 * 109.46708 * 209.99897 * 12 10 8 15 15 H 1.48492 * 109.47392 * 329.99973 * 12 10 8 16 16 C 1.54916 * 101.57941 * 324.49629 * 5 4 2 17 17 N 1.47029 * 109.88338 * 238.90195 * 2 1 3 18 18 C 1.34773 * 125.64625 * 61.62521 * 17 2 1 19 19 O 1.21544 * 120.00035 * 184.77046 * 18 17 2 20 20 C 1.47843 * 119.99912 * 4.76561 * 18 17 2 21 21 C 1.39495 * 120.04345 * 4.85003 * 20 18 17 22 22 C 1.37938 * 119.76694 * 179.97438 * 21 20 18 23 23 C 1.38255 * 120.09924 * 0.02562 * 22 21 20 24 24 C 1.38616 * 120.52425 * 359.97438 * 23 22 21 25 25 C 1.37981 * 119.93301 * 359.74520 * 24 23 22 26 26 C 1.51351 * 109.82785 * 179.84915 * 25 24 23 27 27 C 1.54352 * 105.21263 * 343.18627 * 26 25 24 28 28 C 1.51401 * 130.30896 * 180.02562 * 24 23 22 29 29 H 1.09006 * 109.46791 * 294.06850 * 1 2 3 30 30 H 1.09000 * 109.46844 * 54.06658 * 1 2 3 31 31 H 1.08998 * 109.47239 * 174.06497 * 1 2 3 32 32 H 1.09000 * 110.72345 * 259.96982 * 4 2 1 33 33 H 1.08998 * 110.72012 * 23.24637 * 4 2 1 34 34 H 0.97000 * 119.99782 * 335.00855 * 7 5 4 35 35 H 0.96995 * 120.00155 * 179.97438 * 11 10 8 36 36 H 1.08997 * 110.36069 * 155.84749 * 16 5 4 37 37 H 1.09000 * 110.36678 * 278.06491 * 16 5 4 38 38 H 1.08002 * 120.11790 * 0.02562 * 21 20 18 39 39 H 1.08001 * 119.94967 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.73677 * 179.97438 * 23 22 21 41 41 H 1.08999 * 110.44383 * 224.16402 * 26 25 24 42 42 H 1.08991 * 110.19366 * 102.08451 * 26 25 24 43 43 H 1.08993 * 110.83532 * 267.88857 * 27 26 25 44 44 H 1.09001 * 110.82918 * 144.31770 * 27 26 25 45 45 H 1.09006 * 110.30061 * 316.08591 * 28 24 23 46 46 H 1.09002 * 110.30496 * 78.13357 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 6 3.2876 -1.5143 0.6924 6 1 3.4851 -2.4112 1.2796 7 7 4.4676 -0.6472 0.6502 8 6 5.7217 -1.1948 0.6997 9 1 5.8409 -2.2659 0.7694 10 6 6.8399 -0.3732 0.6602 11 7 8.0453 -0.8994 0.7073 12 14 6.6337 1.4795 0.5389 13 1 6.5626 2.0601 1.9039 14 1 7.7924 2.0600 -0.1862 15 1 5.3824 1.7911 -0.1975 16 6 2.8144 -1.8795 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8077 -0.3619 -2.4657 19 8 2.1981 -1.0758 -3.3686 20 6 1.0888 0.8928 -2.7735 21 6 0.7293 1.7624 -1.7437 22 6 0.0592 2.9317 -2.0374 23 6 -0.2554 3.2402 -3.3478 24 6 0.0979 2.3819 -4.3774 25 6 0.7735 1.2119 -4.0973 26 6 1.0389 0.4527 -5.3794 27 6 0.0823 1.0705 -6.4213 28 6 -0.1306 2.4962 -5.8697 29 1 -0.3633 0.4191 0.9384 30 1 -0.3633 0.6031 -0.8321 31 1 -0.3633 -1.0221 -0.1063 32 1 2.3529 -0.0461 2.0201 33 1 1.3050 -1.4460 1.6182 34 1 4.3605 0.3148 0.5873 35 1 8.8266 -0.3253 0.6793 36 1 3.6716 -2.0339 -1.3922 37 1 2.1900 -2.7726 -0.7131 38 1 0.9756 1.5213 -0.7201 39 1 -0.2209 3.6069 -1.2423 40 1 -0.7806 4.1571 -3.5711 41 1 0.8204 -0.6068 -5.2467 42 1 2.0749 0.5887 -5.6896 43 1 -0.8597 0.5234 -6.4552 44 1 0.5492 1.1017 -7.4058 45 1 -1.1476 2.8322 -6.0720 46 1 0.5895 3.1855 -6.3109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989847071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:40 Heat of formation + Delta-G solvation = 24.904990 kcal Electronic energy + Delta-G solvation = -27011.713373 eV Core-core repulsion = 23480.903755 eV Total energy + Delta-G solvation = -3530.809618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11595 -40.44598 -38.83344 -37.08586 -35.90309 -33.81476 -32.77211 -32.40528 -30.86911 -29.78652 -28.17787 -27.07482 -25.55479 -24.78311 -23.08391 -22.34222 -22.03683 -21.37365 -20.19047 -19.79924 -18.04372 -17.50365 -17.13447 -16.79796 -16.52950 -16.24332 -16.06958 -15.76647 -15.27675 -14.95793 -14.77345 -14.57191 -14.27544 -14.01461 -13.80583 -13.71020 -13.58875 -13.45335 -13.05535 -12.90838 -12.80716 -12.70379 -12.44225 -12.31020 -12.21427 -12.08771 -12.05732 -11.93372 -11.78848 -11.51448 -11.42612 -11.10820 -10.84603 -9.96267 -9.67559 -9.40168 -9.28013 -8.06280 -5.39859 -0.13427 0.36052 1.31248 1.36530 1.41965 1.82750 1.97330 2.43752 2.79856 3.20653 3.33852 3.48712 3.53012 3.57952 3.63662 3.84941 3.95313 4.09121 4.11431 4.18088 4.21327 4.28847 4.35420 4.48744 4.54250 4.61447 4.70951 4.74379 4.78568 4.85138 4.89604 4.91402 4.99645 5.03165 5.08918 5.12437 5.14914 5.17981 5.26677 5.33030 5.35659 5.41122 5.47327 5.59065 5.74357 5.96360 6.17935 6.52398 7.03565 7.09811 7.78885 7.96499 9.15206 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.004274 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.730001 B = 6549.612996 C = 6868.315245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 H 0.091 0.909 4 C -0.123 4.123 5 C 0.162 3.838 6 H 0.087 0.913 7 N -0.738 5.738 8 C -0.232 4.232 9 H 0.061 0.939 10 C -0.061 4.061 11 N -0.982 5.982 12 Si 0.950 3.050 13 H -0.265 1.265 14 H -0.302 1.302 15 H -0.263 1.263 16 C 0.084 3.916 17 N -0.600 5.600 18 C 0.556 3.444 19 O -0.588 6.588 20 C -0.152 4.152 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.078 4.078 24 C -0.121 4.121 25 C -0.063 4.063 26 C -0.084 4.084 27 C -0.114 4.114 28 C -0.074 4.074 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.364 0.636 35 H 0.257 0.743 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.182 0.818 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.812 10.877 -5.399 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 H 0.108 0.892 4 C -0.161 4.161 5 C 0.053 3.947 6 H 0.104 0.896 7 N -0.380 5.380 8 C -0.362 4.362 9 H 0.079 0.921 10 C -0.253 4.253 11 N -0.633 5.633 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.229 1.229 15 H -0.188 1.188 16 C -0.041 4.041 17 N -0.332 5.332 18 C 0.348 3.652 19 O -0.470 6.470 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.096 4.096 24 C -0.122 4.122 25 C -0.064 4.064 26 C -0.121 4.121 27 C -0.152 4.152 28 C -0.111 4.111 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.198 0.802 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.198 0.802 39 H 0.182 0.818 40 H 0.174 0.826 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.118 0.882 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.450 10.343 -5.895 28.097 hybrid contribution 1.222 0.283 -0.384 1.312 sum -24.227 10.626 -6.280 27.190 Atomic orbital electron populations 1.22811 0.92086 1.03653 1.05052 1.22299 0.96143 0.96214 0.84754 0.89212 1.23104 0.96565 1.00527 0.95945 1.21595 0.86278 0.94807 0.92058 0.89555 1.42638 1.01590 1.04778 1.88945 1.19072 0.83437 0.92926 1.40812 0.92088 1.25455 0.94731 1.02403 1.02663 1.69871 0.97869 1.35932 1.59582 0.85484 0.76987 0.81278 0.78454 1.19006 1.22898 1.18805 1.23061 0.93918 0.88453 0.98673 1.48465 1.51235 1.28485 1.04990 1.18618 0.79367 0.85957 0.81305 1.90687 1.54576 1.55511 1.46224 1.19551 1.05359 0.95989 0.94558 1.23123 0.95955 0.93656 1.01474 1.21449 0.99340 0.96650 0.97595 1.21265 0.97542 0.99170 0.91586 1.20972 0.99292 0.94314 0.97576 1.20848 0.95765 0.96691 0.93123 1.21079 1.00059 0.99179 0.91814 1.22358 0.99213 0.95460 0.98144 1.21092 1.03798 0.97563 0.88648 0.87471 0.90479 0.92098 0.88123 0.86640 0.80238 0.93384 0.94703 0.90497 0.80182 0.81759 0.82566 0.92210 0.91889 0.90201 0.88953 0.88170 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.17 71.98 0.59 -2.49 16 2 C 0.11 2.61 2.69 45.34 0.12 2.73 16 3 H 0.09 2.14 5.91 -2.39 -0.01 2.13 16 4 C -0.12 -2.86 6.08 31.78 0.19 -2.66 16 5 C 0.16 5.68 3.72 46.39 0.17 5.86 16 6 H 0.09 3.00 8.09 -2.38 -0.02 2.98 16 7 N -0.74 -33.38 5.04 -316.36 -1.59 -34.97 16 8 C -0.23 -13.13 10.44 84.03 0.88 -12.25 16 9 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 10 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 11 N -0.98 -63.78 13.97 21.65 0.30 -63.48 16 12 Si 0.95 46.15 27.74 68.60 1.90 48.06 16 13 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 15 H -0.26 -11.91 6.52 99.48 0.65 -11.26 16 16 C 0.08 3.14 6.58 86.86 0.57 3.72 16 17 N -0.60 -20.44 3.06 -799.44 -2.45 -22.89 16 18 C 0.56 21.36 7.62 86.79 0.66 22.02 16 19 O -0.59 -27.12 15.07 -3.85 -0.06 -27.18 16 20 C -0.15 -4.74 5.60 -20.06 -0.11 -4.85 16 21 C -0.13 -2.92 6.18 22.50 0.14 -2.78 16 22 C -0.13 -2.29 10.03 22.20 0.22 -2.07 16 23 C -0.08 -1.32 10.03 22.36 0.22 -1.10 16 24 C -0.12 -2.62 6.13 -19.61 -0.12 -2.74 16 25 C -0.06 -1.84 6.03 -19.35 -0.12 -1.96 16 26 C -0.08 -2.39 5.53 30.51 0.17 -2.22 16 27 C -0.11 -2.10 7.09 31.51 0.22 -1.87 16 28 C -0.07 -1.18 6.77 30.53 0.21 -0.97 16 29 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.08 1.43 4.32 -2.39 -0.01 1.42 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.12 1.97 7.85 -2.39 -0.02 1.95 16 34 H 0.36 15.97 5.73 -92.71 -0.53 15.44 16 35 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 36 H 0.03 1.63 8.08 -2.39 -0.02 1.61 16 37 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.18 3.71 2.15 -6.12 -0.01 3.70 16 39 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.06 1.95 7.30 -2.39 -0.02 1.94 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.08 8.14 -2.38 -0.02 1.07 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -80.30 354.99 2.99 -77.30 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.40 Total: 29.95 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 4.49 Total: -6.79 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -3.74 Total: -121.34 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.06 Total: -27.18 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.90 Total: 48.06 kcal Total: -80.30 2.99 -77.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989847071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.209 kcal (2) G-P(sol) polarization free energy of solvation -80.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds