Wall clock time and date at job start Tue Mar 31 2020 12:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 115.56543 * 2 1 4 4 C 1.53076 * 117.49146 * 214.28379 * 2 1 3 5 5 C 1.53000 * 59.98524 * 252.52012 * 4 2 1 6 6 H 1.09001 * 117.49880 * 107.50596 * 5 4 2 7 7 C 1.50703 * 117.49748 * 252.49964 * 5 4 2 8 8 O 1.21277 * 119.99952 * 68.75184 * 7 5 4 9 9 N 1.34771 * 119.99959 * 248.74685 * 7 5 4 10 10 C 1.46502 * 120.00121 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47165 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.76702 * 64.26452 * 11 10 9 13 13 C 1.52781 * 109.77045 * 185.00188 * 11 10 9 14 14 C 1.50602 * 110.86097 * 167.05489 * 13 11 10 15 15 C 1.38978 * 117.62159 * 159.95915 * 14 13 11 16 16 C 1.37907 * 120.58501 * 179.50441 * 15 14 13 17 17 C 1.38272 * 119.82686 * 359.94802 * 16 15 14 18 18 C 1.37963 * 119.71022 * 0.23990 * 17 16 15 19 19 C 1.37669 * 122.86362 * 339.86975 * 14 13 11 20 20 C 1.50813 * 122.34194 * 1.44459 * 19 14 13 21 21 N 1.46684 * 109.67498 * 348.43706 * 20 19 14 22 22 C 1.36936 * 121.33322 * 224.44028 * 21 20 19 23 23 H 1.08001 * 119.99401 * 152.02046 * 22 21 20 24 24 C 1.38811 * 120.00476 * 332.01531 * 22 21 20 25 25 N 1.31616 * 119.99830 * 349.02263 * 24 22 21 26 26 Si 1.86796 * 120.00050 * 169.01944 * 24 22 21 27 27 H 1.48495 * 109.47398 * 60.00071 * 26 24 22 28 28 H 1.48498 * 109.47044 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47390 * 300.00040 * 26 24 22 30 30 H 1.08994 * 109.47373 * 274.31763 * 1 2 3 31 31 H 1.09001 * 109.46666 * 34.31058 * 1 2 3 32 32 H 1.08994 * 109.47261 * 154.30749 * 1 2 3 33 33 H 1.09001 * 117.50987 * 145.03701 * 4 2 1 34 34 H 1.08999 * 117.51872 * 0.02562 * 4 2 1 35 35 H 0.97002 * 120.00367 * 0.02562 * 9 7 5 36 36 H 1.09001 * 109.47404 * 300.00292 * 10 9 7 37 37 H 1.09000 * 109.46624 * 60.00103 * 10 9 7 38 38 H 1.09004 * 109.20172 * 287.40912 * 13 11 10 39 39 H 1.09002 * 109.20267 * 46.75090 * 13 11 10 40 40 H 1.08003 * 119.70943 * 359.51194 * 15 14 13 41 41 H 1.08004 * 120.09145 * 179.97438 * 16 15 14 42 42 H 1.07994 * 120.14456 * 180.26645 * 17 16 15 43 43 H 1.08003 * 119.74235 * 180.02562 * 18 17 16 44 44 H 1.09000 * 109.43402 * 108.50307 * 20 19 14 45 45 H 1.09000 * 109.43588 * 228.37121 * 20 19 14 46 46 H 0.96998 * 120.00278 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2366 -1.1220 -0.7649 5 6 2.2363 -1.1210 0.7651 6 1 1.6111 -1.8583 1.2687 7 6 3.5292 -0.7812 1.4610 8 8 3.9709 0.3467 1.4027 9 7 4.1944 -1.7308 2.1481 10 6 5.4515 -1.4006 2.8241 11 6 5.9970 -2.6471 3.5238 12 1 6.2487 -3.4056 2.7825 13 6 7.2406 -2.2829 4.3331 14 6 7.6144 -3.3985 5.2733 15 6 8.9169 -3.4242 5.7571 16 6 9.3220 -4.4124 6.6295 17 6 8.4261 -5.3869 7.0288 18 6 7.1335 -5.3661 6.5470 19 6 6.7262 -4.3750 5.6643 20 6 5.3073 -4.4256 5.1557 21 7 4.9884 -3.1761 4.4567 22 6 3.8002 -2.5276 4.6639 23 1 3.7400 -1.4569 4.5354 24 6 2.6733 -3.2461 5.0388 25 7 2.6840 -4.5612 4.9867 26 14 1.1419 -2.3467 5.6175 27 1 0.6542 -1.4533 4.5363 28 1 0.0866 -3.3345 5.9577 29 1 1.4675 -1.5373 6.8192 30 1 -0.3634 0.0774 1.0247 31 1 -0.3633 0.8489 -0.5793 32 1 -0.3633 -0.9260 -0.4455 33 1 3.1719 -0.8768 -1.2682 34 1 1.6116 -1.8596 -1.2683 35 1 3.8413 -2.6330 2.1945 36 1 6.1772 -1.0493 2.0905 37 1 5.2727 -0.6183 3.5617 38 1 8.0701 -2.0958 3.6512 39 1 7.0408 -1.3803 4.9107 40 1 9.6181 -2.6634 5.4473 41 1 10.3364 -4.4250 7.0003 42 1 8.7366 -6.1607 7.7152 43 1 6.4331 -6.1268 6.8589 44 1 5.1984 -5.2641 4.4678 45 1 4.6252 -4.5556 5.9959 46 1 1.8967 -5.0634 5.2490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054049723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:57 Heat of formation + Delta-G solvation = 28.937290 kcal Electronic energy + Delta-G solvation = -26571.443678 eV Core-core repulsion = 23040.808913 eV Total energy + Delta-G solvation = -3530.634764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.63989 -39.16589 -37.01957 -36.07353 -33.67973 -32.89222 -31.43274 -30.30898 -29.07497 -28.52048 -25.85307 -25.57564 -23.24680 -22.78198 -21.55894 -21.06588 -20.52255 -19.50315 -18.98283 -17.14155 -16.25356 -16.15723 -15.55206 -15.19756 -14.62004 -14.49313 -14.44171 -14.06585 -13.99426 -13.53028 -13.37550 -13.02723 -12.93299 -12.61215 -12.54915 -12.43150 -12.10860 -11.82707 -11.70264 -11.56433 -11.29291 -11.12340 -10.89674 -10.86358 -10.72459 -10.54156 -10.21068 -10.15010 -10.02286 -9.87561 -9.72160 -9.23513 -8.78018 -8.28564 -8.22028 -7.86271 -6.83315 -5.93180 -3.37284 1.85684 1.93377 3.03321 3.30839 3.36392 3.40048 3.78649 4.07865 4.27801 4.36641 4.93591 4.98307 5.08371 5.13855 5.22156 5.28130 5.35663 5.42324 5.46020 5.56184 5.60525 5.71510 5.78035 5.81565 5.84104 5.90977 5.93954 6.03716 6.05340 6.10978 6.18465 6.19768 6.29865 6.36175 6.45476 6.54520 6.61659 6.80735 6.93344 6.94837 7.12587 7.15821 7.19703 7.49044 7.62566 7.71229 8.24156 8.30974 8.90661 9.06130 9.65693 10.24126 11.15854 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.004314 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.341267 B = 6488.546929 C = 7782.854511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 H 0.114 0.886 4 C -0.152 4.152 5 C -0.182 4.182 6 H 0.124 0.876 7 C 0.539 3.461 8 O -0.568 6.568 9 N -0.688 5.688 10 C 0.137 3.863 11 C 0.158 3.842 12 H 0.042 0.958 13 C -0.091 4.091 14 C -0.068 4.068 15 C -0.128 4.128 16 C -0.140 4.140 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.077 4.077 20 C 0.207 3.793 21 N -0.588 5.588 22 C -0.245 4.245 23 H 0.071 0.929 24 C 0.008 3.992 25 N -0.906 5.906 26 Si 0.897 3.103 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.416 0.584 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.042 0.958 45 H 0.097 0.903 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 0.753 -5.051 6.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 H 0.132 0.868 4 C -0.190 4.190 5 C -0.203 4.203 6 H 0.142 0.858 7 C 0.325 3.675 8 O -0.449 6.449 9 N -0.338 5.338 10 C 0.012 3.988 11 C 0.051 3.949 12 H 0.059 0.941 13 C -0.130 4.130 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.079 4.079 20 C 0.082 3.918 21 N -0.311 5.311 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.191 4.191 25 N -0.550 5.550 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.216 1.216 29 H -0.210 1.210 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.253 0.747 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.060 0.940 45 H 0.115 0.885 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.449 1.416 -5.038 6.869 hybrid contribution -0.867 -0.202 0.743 1.159 sum 3.582 1.214 -4.295 5.723 Atomic orbital electron populations 1.21387 0.92665 1.01786 1.02161 1.22319 0.94901 0.95090 1.02181 0.86761 1.23051 1.02799 1.01470 0.91672 1.22323 0.98314 1.04630 0.95076 0.85820 1.19493 0.84503 0.84753 0.78776 1.90612 1.69218 1.21377 1.63644 1.45800 1.23738 1.14170 1.50070 1.21235 0.84898 0.97443 0.95190 1.20711 0.89523 0.93578 0.91116 0.94054 1.20886 0.98408 0.96608 0.97102 1.19484 0.92711 0.96394 0.98200 1.21126 0.95877 0.98817 0.98759 1.20851 0.99051 0.96234 0.99714 1.20954 0.94087 0.99046 1.00777 1.21117 0.95897 0.98981 0.98213 1.21019 0.98903 0.93019 0.94946 1.19783 0.86956 0.88202 0.96838 1.44018 1.15761 1.26063 1.45262 1.19069 0.85069 0.91065 1.42223 0.91133 1.25019 0.97331 0.95404 1.01314 1.69945 1.29374 1.04546 1.51143 0.86439 0.82838 0.78775 0.79251 1.20644 1.21583 1.21029 0.91974 0.92062 0.92463 0.88616 0.88192 0.74661 0.92581 0.91568 0.91871 0.90812 0.87090 0.87129 0.86996 0.86474 0.94007 0.88545 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 10.19 37.16 0.38 -1.05 16 2 C -0.13 -1.76 5.92 -90.58 -0.54 -2.30 16 3 H 0.11 1.73 7.67 -51.93 -0.40 1.33 16 4 C -0.15 -1.96 9.88 -26.69 -0.26 -2.22 16 5 C -0.18 -2.90 5.91 -91.77 -0.54 -3.44 16 6 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 7 C 0.54 10.26 7.61 -10.99 -0.08 10.17 16 8 O -0.57 -12.27 16.26 5.56 0.09 -12.18 16 9 N -0.69 -13.04 4.08 -60.29 -0.25 -13.29 16 10 C 0.14 2.52 4.43 -4.04 -0.02 2.51 16 11 C 0.16 2.97 3.00 -67.65 -0.20 2.77 16 12 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 13 C -0.09 -1.54 5.21 -28.04 -0.15 -1.69 16 14 C -0.07 -1.22 5.76 -104.60 -0.60 -1.82 16 15 C -0.13 -2.00 9.59 -39.43 -0.38 -2.38 16 16 C -0.14 -2.06 10.04 -39.69 -0.40 -2.46 16 17 C -0.13 -1.98 10.05 -39.67 -0.40 -2.38 16 18 C -0.12 -2.14 9.62 -39.46 -0.38 -2.52 16 19 C -0.08 -1.50 5.82 -104.56 -0.61 -2.11 16 20 C 0.21 4.59 4.80 -5.04 -0.02 4.56 16 21 N -0.59 -13.02 2.86 -166.39 -0.48 -13.50 16 22 C -0.25 -5.95 7.08 -15.06 -0.11 -6.06 16 23 H 0.07 1.78 6.18 -52.49 -0.32 1.46 16 24 C 0.01 0.20 5.08 -17.43 -0.09 0.12 16 25 N -0.91 -23.55 11.06 55.49 0.61 -22.94 16 26 Si 0.90 20.71 29.57 -169.99 -5.03 15.69 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 35 H 0.42 8.19 7.48 -40.82 -0.31 7.89 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.34 7.25 -51.93 -0.38 0.96 16 38 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 40 H 0.11 1.48 8.05 -52.48 -0.42 1.06 16 41 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.91 8.05 -52.48 -0.42 1.48 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.10 2.39 6.45 -51.93 -0.33 2.06 16 46 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -27.68 369.79 -11.06 -38.74 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -7.19 Total: 12.20 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -4.40 Total: -10.30 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.11 Total: -49.72 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.68 -11.06 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.676 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds