Wall clock time and date at job start Tue Mar 31 2020 12:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 115.56543 * 2 1 4 4 C 1.53076 * 117.49146 * 214.28379 * 2 1 3 5 5 C 1.53000 * 59.98524 * 252.52012 * 4 2 1 6 6 H 1.09001 * 117.49880 * 107.50596 * 5 4 2 7 7 C 1.50703 * 117.49748 * 252.49964 * 5 4 2 8 8 O 1.21277 * 119.99952 * 68.75184 * 7 5 4 9 9 N 1.34771 * 119.99959 * 248.74685 * 7 5 4 10 10 C 1.46502 * 120.00121 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47165 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.76702 * 64.26452 * 11 10 9 13 13 C 1.52781 * 109.77045 * 185.00188 * 11 10 9 14 14 C 1.50602 * 110.86097 * 167.05489 * 13 11 10 15 15 C 1.38978 * 117.62159 * 159.95915 * 14 13 11 16 16 C 1.37907 * 120.58501 * 179.50441 * 15 14 13 17 17 C 1.38272 * 119.82686 * 359.94802 * 16 15 14 18 18 C 1.37963 * 119.71022 * 0.23990 * 17 16 15 19 19 C 1.37669 * 122.86362 * 339.86975 * 14 13 11 20 20 C 1.50813 * 122.34194 * 1.44459 * 19 14 13 21 21 N 1.46684 * 109.67498 * 348.43706 * 20 19 14 22 22 C 1.36936 * 121.33322 * 224.44028 * 21 20 19 23 23 H 1.08001 * 119.99401 * 152.02046 * 22 21 20 24 24 C 1.38811 * 120.00476 * 332.01531 * 22 21 20 25 25 N 1.31616 * 119.99830 * 349.02263 * 24 22 21 26 26 Si 1.86796 * 120.00050 * 169.01944 * 24 22 21 27 27 H 1.48495 * 109.47398 * 60.00071 * 26 24 22 28 28 H 1.48498 * 109.47044 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47390 * 300.00040 * 26 24 22 30 30 H 1.08994 * 109.47373 * 274.31763 * 1 2 3 31 31 H 1.09001 * 109.46666 * 34.31058 * 1 2 3 32 32 H 1.08994 * 109.47261 * 154.30749 * 1 2 3 33 33 H 1.09001 * 117.50987 * 145.03701 * 4 2 1 34 34 H 1.08999 * 117.51872 * 0.02562 * 4 2 1 35 35 H 0.97002 * 120.00367 * 0.02562 * 9 7 5 36 36 H 1.09001 * 109.47404 * 300.00292 * 10 9 7 37 37 H 1.09000 * 109.46624 * 60.00103 * 10 9 7 38 38 H 1.09004 * 109.20172 * 287.40912 * 13 11 10 39 39 H 1.09002 * 109.20267 * 46.75090 * 13 11 10 40 40 H 1.08003 * 119.70943 * 359.51194 * 15 14 13 41 41 H 1.08004 * 120.09145 * 179.97438 * 16 15 14 42 42 H 1.07994 * 120.14456 * 180.26645 * 17 16 15 43 43 H 1.08003 * 119.74235 * 180.02562 * 18 17 16 44 44 H 1.09000 * 109.43402 * 108.50307 * 20 19 14 45 45 H 1.09000 * 109.43588 * 228.37121 * 20 19 14 46 46 H 0.96998 * 120.00278 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2366 -1.1220 -0.7649 5 6 2.2363 -1.1210 0.7651 6 1 1.6111 -1.8583 1.2687 7 6 3.5292 -0.7812 1.4610 8 8 3.9709 0.3467 1.4027 9 7 4.1944 -1.7308 2.1481 10 6 5.4515 -1.4006 2.8241 11 6 5.9970 -2.6471 3.5238 12 1 6.2487 -3.4056 2.7825 13 6 7.2406 -2.2829 4.3331 14 6 7.6144 -3.3985 5.2733 15 6 8.9169 -3.4242 5.7571 16 6 9.3220 -4.4124 6.6295 17 6 8.4261 -5.3869 7.0288 18 6 7.1335 -5.3661 6.5470 19 6 6.7262 -4.3750 5.6643 20 6 5.3073 -4.4256 5.1557 21 7 4.9884 -3.1761 4.4567 22 6 3.8002 -2.5276 4.6639 23 1 3.7400 -1.4569 4.5354 24 6 2.6733 -3.2461 5.0388 25 7 2.6840 -4.5612 4.9867 26 14 1.1419 -2.3467 5.6175 27 1 0.6542 -1.4533 4.5363 28 1 0.0866 -3.3345 5.9577 29 1 1.4675 -1.5373 6.8192 30 1 -0.3634 0.0774 1.0247 31 1 -0.3633 0.8489 -0.5793 32 1 -0.3633 -0.9260 -0.4455 33 1 3.1719 -0.8768 -1.2682 34 1 1.6116 -1.8596 -1.2683 35 1 3.8413 -2.6330 2.1945 36 1 6.1772 -1.0493 2.0905 37 1 5.2727 -0.6183 3.5617 38 1 8.0701 -2.0958 3.6512 39 1 7.0408 -1.3803 4.9107 40 1 9.6181 -2.6634 5.4473 41 1 10.3364 -4.4250 7.0003 42 1 8.7366 -6.1607 7.7152 43 1 6.4331 -6.1268 6.8589 44 1 5.1984 -5.2641 4.4678 45 1 4.6252 -4.5556 5.9959 46 1 1.8967 -5.0634 5.2490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054049723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:56 Heat of formation + Delta-G solvation = 15.662594 kcal Electronic energy + Delta-G solvation = -26572.019312 eV Core-core repulsion = 23040.808913 eV Total energy + Delta-G solvation = -3531.210398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09907 -40.53969 -38.39909 -37.46551 -35.32376 -34.47972 -32.96987 -31.79818 -30.57087 -29.59289 -27.38703 -27.15608 -24.64215 -24.37174 -22.89624 -22.44572 -21.71143 -20.93233 -20.51781 -18.64880 -17.85303 -17.65914 -17.06308 -16.62139 -16.18599 -16.01306 -15.83097 -15.59550 -15.31971 -14.92942 -14.83848 -14.57293 -14.12724 -14.03944 -13.80089 -13.68000 -13.55681 -13.25467 -13.14057 -12.89942 -12.75061 -12.64550 -12.53611 -12.31226 -12.29005 -12.17392 -11.87803 -11.61068 -11.34171 -11.28500 -11.02040 -10.70530 -10.66348 -9.84297 -9.53782 -9.26439 -8.67434 -7.87344 -5.31512 0.58701 0.62728 1.41476 1.45375 1.49744 1.60628 2.36166 2.48288 2.88237 2.98370 3.30984 3.49737 3.79438 3.81310 3.83938 3.92717 4.10400 4.22687 4.24342 4.31112 4.39578 4.40485 4.41248 4.50517 4.63777 4.71140 4.76084 4.81946 4.86272 4.90863 4.91662 4.92156 5.07246 5.17490 5.19474 5.22591 5.27117 5.40944 5.42832 5.51572 5.62418 5.70127 5.70906 5.74760 6.01727 6.27706 6.35211 6.74622 7.14301 7.36950 7.79932 8.35978 9.19622 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.004314 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.341267 B = 6488.546929 C = 7782.854511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.125 4.125 3 H 0.099 0.901 4 C -0.126 4.126 5 C -0.208 4.208 6 H 0.121 0.879 7 C 0.534 3.466 8 O -0.598 6.598 9 N -0.690 5.690 10 C 0.142 3.858 11 C 0.160 3.840 12 H 0.043 0.957 13 C -0.084 4.084 14 C -0.084 4.084 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.137 4.137 19 C -0.109 4.109 20 C 0.223 3.777 21 N -0.599 5.599 22 C -0.232 4.232 23 H 0.060 0.940 24 C -0.031 4.031 25 N -0.926 5.926 26 Si 0.941 3.059 27 H -0.278 1.278 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.412 0.588 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.115 0.885 44 H 0.015 0.985 45 H 0.060 0.940 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 0.998 -5.646 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 H 0.117 0.883 4 C -0.163 4.163 5 C -0.229 4.229 6 H 0.138 0.862 7 C 0.322 3.678 8 O -0.481 6.481 9 N -0.338 5.338 10 C 0.018 3.982 11 C 0.054 3.946 12 H 0.061 0.939 13 C -0.124 4.124 14 C -0.084 4.084 15 C -0.145 4.145 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.110 4.110 20 C 0.098 3.902 21 N -0.322 5.322 22 C -0.362 4.362 23 H 0.078 0.922 24 C -0.227 4.227 25 N -0.572 5.572 26 Si 0.771 3.229 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.133 0.867 44 H 0.033 0.967 45 H 0.078 0.922 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.281 1.665 -5.638 8.603 hybrid contribution -1.307 -0.269 0.951 1.639 sum 4.974 1.395 -4.687 6.975 Atomic orbital electron populations 1.21404 0.90709 1.03531 1.02018 1.22413 0.96355 0.94150 1.01414 0.88279 1.23183 1.02972 1.00990 0.89166 1.22299 0.97156 1.06397 0.97094 0.86152 1.20034 0.85241 0.84141 0.78364 1.90584 1.70315 1.22405 1.64821 1.45871 1.23976 1.13964 1.50038 1.21204 0.85292 0.96621 0.95117 1.20828 0.89520 0.93423 0.90860 0.93920 1.20825 0.98226 0.96066 0.97237 1.19655 0.93765 0.96172 0.98846 1.21436 0.95035 0.99703 0.98359 1.21331 1.00539 0.94838 0.98172 1.21312 0.92885 0.99841 1.00438 1.21230 0.97354 0.98676 0.98331 1.20786 0.97529 0.95394 0.97293 1.19343 0.88543 0.87366 0.94958 1.44145 1.15868 1.25950 1.46280 1.19031 0.85847 0.90525 1.40772 0.92246 1.25445 0.99078 0.95834 1.02392 1.70068 1.29362 1.05256 1.52550 0.85745 0.80951 0.77745 0.78435 1.20384 1.21797 1.21896 0.93084 0.90123 0.90907 0.88504 0.85362 0.75195 0.90643 0.93633 0.88613 0.91494 0.84205 0.83361 0.83923 0.86704 0.96713 0.92158 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 10.19 71.98 0.73 -1.83 16 2 C -0.12 -3.35 5.92 -10.77 -0.06 -3.41 16 3 H 0.10 2.98 7.67 -2.39 -0.02 2.96 16 4 C -0.13 -3.01 9.88 30.62 0.30 -2.70 16 5 C -0.21 -6.59 5.91 -11.54 -0.07 -6.66 16 6 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 7 C 0.53 20.67 7.61 87.66 0.67 21.33 16 8 O -0.60 -26.26 16.26 -3.02 -0.05 -26.31 16 9 N -0.69 -26.75 4.08 -463.06 -1.89 -28.63 16 10 C 0.14 5.29 4.43 86.38 0.38 5.67 16 11 C 0.16 6.05 3.00 44.78 0.13 6.19 16 12 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 13 C -0.08 -2.77 5.21 29.74 0.16 -2.61 16 14 C -0.08 -2.91 5.76 -19.85 -0.11 -3.03 16 15 C -0.13 -3.55 9.59 22.37 0.21 -3.34 16 16 C -0.13 -3.30 10.04 22.20 0.22 -3.07 16 17 C -0.13 -3.48 10.05 22.21 0.22 -3.26 16 18 C -0.14 -4.72 9.62 22.35 0.21 -4.51 16 19 C -0.11 -4.27 5.82 -19.82 -0.12 -4.38 16 20 C 0.22 10.39 4.80 85.63 0.41 10.80 16 21 N -0.60 -27.49 2.86 -680.35 -1.95 -29.44 16 22 C -0.23 -11.66 7.08 84.03 0.59 -11.07 16 23 H 0.06 3.11 6.18 -2.91 -0.02 3.10 16 24 C -0.03 -1.63 5.08 84.86 0.43 -1.19 16 25 N -0.93 -50.33 11.06 21.65 0.24 -50.09 16 26 Si 0.94 43.83 29.57 68.60 2.03 45.86 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 29 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.13 2.36 8.05 -2.39 -0.02 2.34 16 35 H 0.41 16.74 7.48 -92.71 -0.69 16.05 16 36 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.05 1.89 7.25 -2.39 -0.02 1.87 16 38 H 0.10 2.50 8.10 -2.38 -0.02 2.48 16 39 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 40 H 0.14 3.07 8.05 -2.91 -0.02 3.05 16 41 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 42 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 43 H 0.11 3.85 8.05 -2.91 -0.02 3.83 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 3.19 6.45 -2.39 -0.02 3.18 16 46 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -62.43 369.79 2.99 -59.44 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.28 Total: 36.24 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 4.33 Total: -7.07 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -3.60 Total: -108.16 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -62.43 2.99 -59.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.105 kcal (2) G-P(sol) polarization free energy of solvation -62.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds