Wall clock time and date at job start Tue Mar 31 2020 12:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32688 * 1 3 3 C 1.47666 * 120.00449 * 2 1 4 4 C 1.39710 * 119.99831 * 180.02562 * 3 2 1 5 5 C 1.37592 * 120.00427 * 180.02562 * 4 3 2 6 6 C 1.39745 * 119.99591 * 359.97073 * 5 4 3 7 7 C 1.47687 * 120.00410 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00103 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00274 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00114 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.50331 * 34.93692 * 10 9 7 12 12 C 1.53050 * 109.49929 * 154.99683 * 10 9 7 13 13 C 1.53046 * 109.53447 * 58.58220 * 12 10 9 14 14 C 1.53196 * 109.30889 * 61.36948 * 13 12 10 15 15 H 1.09001 * 109.59026 * 65.29346 * 14 13 12 16 16 C 1.53003 * 109.58346 * 185.57339 * 14 13 12 17 17 N 1.46927 * 108.77640 * 305.36096 * 14 13 12 18 18 C 1.36943 * 120.62850 * 233.61260 * 17 14 13 19 19 H 1.07991 * 120.00111 * 29.00934 * 18 17 14 20 20 C 1.38808 * 119.99592 * 209.01216 * 18 17 14 21 21 N 1.31624 * 120.00407 * 15.02906 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 195.03252 * 20 18 17 23 23 H 1.48502 * 109.47036 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47301 * 119.99714 * 22 20 18 25 25 H 1.48496 * 109.47092 * 239.99943 * 22 20 18 26 26 C 1.46920 * 118.73927 * 53.60992 * 17 14 13 27 27 C 1.39745 * 119.99211 * 0.26153 * 6 5 4 28 28 C 1.37598 * 119.99367 * 359.50231 * 27 6 5 29 29 H 1.07989 * 120.00341 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99112 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99564 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.99470 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.00263 * 179.97438 * 5 4 3 34 34 H 0.97007 * 119.99697 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.46049 * 298.57061 * 12 10 9 36 36 H 1.08991 * 109.44738 * 178.59631 * 12 10 9 37 37 H 1.08990 * 109.50003 * 301.41640 * 13 12 10 38 38 H 1.08997 * 109.49526 * 181.31384 * 13 12 10 39 39 H 1.09001 * 109.46933 * 60.00302 * 16 14 13 40 40 H 1.08998 * 109.46796 * 179.97438 * 16 14 13 41 41 H 1.08997 * 109.47231 * 300.00325 * 16 14 13 42 42 H 0.96994 * 119.99922 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.58791 * 186.60138 * 26 17 14 44 44 H 1.09001 * 109.70334 * 66.25006 * 26 17 14 45 45 H 1.07999 * 120.00161 * 179.72119 * 27 6 5 46 46 H 1.08005 * 119.99508 * 180.20830 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0653 1.2788 0.0000 4 6 3.4624 1.2786 -0.0005 5 6 4.1506 2.4701 0.0000 6 6 3.4520 3.6804 0.0005 7 6 4.1905 4.9594 0.0016 8 8 5.4063 4.9593 0.0017 9 7 3.5167 6.1266 0.0026 10 6 4.2493 7.3952 0.0031 11 1 5.1605 7.2896 -0.5856 12 6 3.3723 8.4919 -0.6057 13 6 2.0774 8.6180 0.2004 14 6 2.4144 9.0129 1.6417 15 1 2.8552 10.0098 1.6540 16 6 1.1391 9.0056 2.4870 17 7 3.3722 8.0411 2.1867 18 6 3.1152 7.3944 3.3661 19 1 2.0955 7.2068 3.6680 20 6 4.1655 6.9801 4.1736 21 7 5.3769 7.4539 3.9724 22 14 3.8598 5.7500 5.5457 23 1 2.4231 5.3747 5.5631 24 1 4.6858 4.5374 5.3166 25 1 4.2272 6.3603 6.8486 26 6 4.6108 7.7763 1.4422 27 6 2.0546 3.6803 0.0059 28 6 1.3667 2.4886 0.0005 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 0.0004 31 1 1.8668 -0.9354 -0.0004 32 1 4.0022 0.3432 -0.0014 33 1 5.2306 2.4699 0.0000 34 1 2.5467 6.1266 0.0021 35 1 3.1338 8.2350 -1.6377 36 1 3.9086 9.4404 -0.5820 37 1 1.5529 7.6627 0.1981 38 1 1.4432 9.3830 -0.2475 39 1 0.7028 8.0068 2.4776 40 1 1.3811 9.2863 3.5121 41 1 0.4251 9.7179 2.0737 42 1 6.1109 7.1640 4.5364 43 1 5.1515 6.9551 1.9128 44 1 5.2351 8.6698 1.4378 45 1 1.5145 4.6156 0.0108 46 1 0.2867 2.4886 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071834884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:06 Heat of formation + Delta-G solvation = 28.738116 kcal Electronic energy + Delta-G solvation = -26872.190769 eV Core-core repulsion = 23341.547368 eV Total energy + Delta-G solvation = -3530.643401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.98631 -38.68687 -37.36523 -34.21755 -34.13106 -32.73762 -31.40457 -30.48845 -29.89488 -29.25005 -26.23033 -25.02430 -24.07272 -22.63693 -22.16086 -21.11029 -20.37390 -19.63963 -18.72008 -17.83951 -16.51430 -16.06468 -15.51933 -15.10145 -14.77819 -14.72187 -14.30302 -14.01226 -13.91691 -13.67149 -13.34948 -13.29551 -13.06758 -12.90628 -12.64422 -12.47806 -12.24296 -11.87125 -11.37318 -11.22174 -11.16263 -10.95227 -10.89721 -10.85633 -10.69363 -10.42040 -10.35975 -10.29947 -9.94094 -9.55578 -9.44448 -9.33005 -8.98242 -8.42490 -8.42311 -8.18594 -6.57934 -5.71999 -3.16270 0.61539 1.43436 2.22941 3.37771 3.40476 3.47493 3.49431 3.73697 4.15679 4.52777 4.58747 4.67259 4.89711 5.07753 5.14872 5.31584 5.35174 5.38533 5.39179 5.46737 5.51997 5.60347 5.61288 5.80693 5.99935 6.01989 6.11720 6.13771 6.17533 6.20541 6.32923 6.35146 6.42177 6.43841 6.47899 6.55087 6.61070 6.64326 6.70933 6.88270 6.94049 7.05413 7.12981 7.41748 7.73753 7.86633 8.12717 8.51938 8.80755 9.26389 9.90937 10.46502 11.35830 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.004845 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.270105 B = 5777.670919 C = 6482.521600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.117 4.117 3 C -0.047 4.047 4 C -0.118 4.118 5 C -0.062 4.062 6 C -0.119 4.119 7 C 0.554 3.446 8 O -0.544 6.544 9 N -0.693 5.693 10 C 0.118 3.882 11 H 0.076 0.924 12 C -0.119 4.119 13 C -0.130 4.130 14 C 0.165 3.835 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.583 5.583 18 C -0.249 4.249 19 H 0.068 0.932 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.894 3.106 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.161 3.839 27 C -0.082 4.082 28 C -0.122 4.122 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.394 0.606 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.252 0.748 43 H 0.098 0.902 44 H 0.025 0.975 45 H 0.127 0.873 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 -8.306 -11.014 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 C -0.048 4.048 4 C -0.136 4.136 5 C -0.081 4.081 6 C -0.122 4.122 7 C 0.340 3.660 8 O -0.423 6.423 9 N -0.344 5.344 10 C 0.012 3.988 11 H 0.094 0.906 12 C -0.157 4.157 13 C -0.170 4.170 14 C 0.058 3.942 15 H 0.042 0.958 16 C -0.193 4.193 17 N -0.306 5.306 18 C -0.379 4.379 19 H 0.086 0.914 20 C -0.192 4.192 21 N -0.543 5.543 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.035 3.965 27 C -0.100 4.100 28 C -0.140 4.140 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.230 0.770 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.116 0.884 44 H 0.043 0.957 45 H 0.145 0.855 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.583 -8.283 -10.896 16.155 hybrid contribution -0.528 -0.630 0.896 1.216 sum -9.111 -8.913 -10.000 16.201 Atomic orbital electron populations 1.24420 0.95695 1.02308 0.99187 1.21836 0.95234 0.95773 1.00642 1.19247 0.93408 0.93131 0.98977 1.21192 0.93133 0.98078 1.01220 1.21218 1.00919 0.90782 0.95169 1.20205 0.93672 0.94261 1.04029 1.18088 0.87268 0.83725 0.76876 1.90748 1.13377 1.87562 1.50579 1.45771 1.09938 1.05380 1.73292 1.21808 0.94201 0.81721 1.01053 0.90573 1.21698 0.97215 0.98889 0.97897 1.22069 0.96306 1.00406 0.98191 1.20458 0.90794 0.92432 0.90474 0.95768 1.21797 0.96427 1.00353 1.00738 1.44052 1.19143 1.44808 1.22595 1.19109 0.92302 1.30304 0.96170 0.91416 1.25038 0.96313 1.00282 0.97595 1.69988 1.00011 1.43826 1.40457 0.86359 0.77609 0.81544 0.82102 1.20348 1.21614 1.21778 1.21191 0.88337 1.00392 0.86607 1.21239 0.93192 0.98367 0.97240 1.21173 0.99904 0.91521 1.01422 0.87796 0.87899 0.86362 0.85424 0.84546 0.77032 0.93028 0.91045 0.92848 0.92829 0.92978 0.92065 0.94435 0.93738 0.88403 0.95694 0.85519 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 14.15 28.84 0.41 -1.07 16 2 C -0.12 -1.12 9.90 -37.62 -0.37 -1.49 16 3 C -0.05 -0.57 5.87 -104.95 -0.62 -1.19 16 4 C -0.12 -1.50 9.76 -39.27 -0.38 -1.88 16 5 C -0.06 -0.95 9.57 -39.25 -0.38 -1.33 16 6 C -0.12 -1.98 5.88 -104.91 -0.62 -2.60 16 7 C 0.55 10.95 7.73 -12.40 -0.10 10.86 16 8 O -0.54 -12.62 15.99 5.30 0.08 -12.53 16 9 N -0.69 -12.68 4.86 -54.68 -0.27 -12.95 16 10 C 0.12 2.27 2.81 -67.81 -0.19 2.08 16 11 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 12 C -0.12 -1.87 5.59 -26.68 -0.15 -2.02 16 13 C -0.13 -2.05 5.21 -26.61 -0.14 -2.19 16 14 C 0.17 3.23 3.50 -67.59 -0.24 2.99 16 15 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 16 C -0.14 -2.43 7.95 37.16 0.30 -2.14 16 17 N -0.58 -13.84 2.91 -164.78 -0.48 -14.32 16 18 C -0.25 -6.59 8.61 -15.06 -0.13 -6.72 16 19 H 0.07 1.75 6.20 -52.49 -0.33 1.43 16 20 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 21 N -0.90 -26.60 11.14 55.49 0.62 -25.98 16 22 Si 0.89 22.31 29.58 -169.99 -5.03 17.28 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 C 0.16 3.87 4.89 -3.71 -0.02 3.85 16 27 C -0.08 -1.15 9.52 -39.25 -0.37 -1.52 16 28 C -0.12 -1.50 9.38 -39.27 -0.37 -1.87 16 29 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.10 0.80 6.02 -52.49 -0.32 0.49 16 31 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.14 2.12 7.64 -52.49 -0.40 1.72 16 34 H 0.39 6.38 4.79 -40.82 -0.20 6.19 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.94 7.40 -51.93 -0.38 0.55 16 40 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.10 2.79 6.06 -51.93 -0.31 2.47 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.13 1.58 6.38 -52.49 -0.34 1.24 16 46 H 0.13 1.25 6.15 -52.48 -0.32 0.92 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -31.97 364.69 -9.68 -41.65 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.66 Total: 7.49 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.45 Total: -6.14 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.13 Total: -53.24 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.97 -9.68 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071834884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.388 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds