Wall clock time and date at job start Tue Mar 31 2020 12:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 115.56363 * 2 1 4 4 C 1.52996 * 117.49830 * 145.69631 * 2 1 3 5 5 C 1.53000 * 60.00354 * 107.48651 * 4 2 1 6 6 H 1.09002 * 117.49862 * 252.48829 * 5 4 2 7 7 C 1.50695 * 117.50164 * 107.48634 * 5 4 2 8 8 O 1.21286 * 120.00322 * 291.39726 * 7 5 4 9 9 N 1.34781 * 120.00013 * 111.39436 * 7 5 4 10 10 C 1.48145 * 127.83672 * 179.97438 * 9 7 5 11 11 C 1.54395 * 104.61454 * 219.60536 * 10 9 7 12 12 H 1.09002 * 110.34481 * 95.00280 * 11 10 9 13 13 C 1.50698 * 110.43104 * 217.21839 * 11 10 9 14 14 C 1.38238 * 120.00151 * 56.78665 * 13 11 10 15 15 C 1.38234 * 119.99691 * 179.78748 * 14 13 11 16 16 C 1.38231 * 120.00494 * 0.44743 * 15 14 13 17 17 C 1.38242 * 119.99944 * 359.80637 * 16 15 14 18 18 C 1.38237 * 119.99924 * 237.06679 * 13 11 10 19 19 C 1.54281 * 104.95731 * 336.13228 * 11 10 9 20 20 H 1.09001 * 110.34452 * 241.02011 * 19 11 10 21 21 N 1.46502 * 110.34192 * 118.87470 * 19 11 10 22 22 C 1.36941 * 120.00222 * 154.99895 * 21 19 11 23 23 H 1.08002 * 119.99789 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99924 * 180.02562 * 22 21 19 25 25 N 1.31612 * 120.00092 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99598 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47322 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47057 * 119.99842 * 26 24 22 29 29 H 1.48501 * 109.46919 * 239.99460 * 26 24 22 30 30 C 1.48140 * 127.83553 * 359.97438 * 9 7 5 31 31 H 1.09004 * 109.46939 * 205.68680 * 1 2 3 32 32 H 1.08997 * 109.46734 * 325.68526 * 1 2 3 33 33 H 1.08997 * 109.47057 * 85.68608 * 1 2 3 34 34 H 1.08992 * 117.50347 * 359.97438 * 4 2 1 35 35 H 1.09000 * 117.51936 * 214.96455 * 4 2 1 36 36 H 1.08990 * 110.41068 * 100.82226 * 10 9 7 37 37 H 1.09000 * 110.40585 * 338.38365 * 10 9 7 38 38 H 1.07998 * 119.99958 * 0.02562 * 14 13 11 39 39 H 1.08006 * 119.99748 * 180.27431 * 15 14 13 40 40 H 1.07997 * 120.00314 * 179.83382 * 16 15 14 41 41 H 1.07993 * 120.00353 * 179.97438 * 17 16 15 42 42 H 1.07997 * 119.99912 * 359.97194 * 18 13 11 43 43 H 0.97002 * 120.00013 * 334.99814 * 21 19 11 44 44 H 0.97007 * 119.99869 * 180.02562 * 25 24 22 45 45 H 1.08998 * 110.41105 * 21.61541 * 30 9 7 46 46 H 1.08999 * 110.51120 * 259.22609 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1211 0.7648 5 6 2.2365 -1.1210 -0.7652 6 1 1.6115 -1.8587 -1.2685 7 6 3.5292 -0.7811 -1.4610 8 8 3.9719 0.3465 -1.4011 9 7 4.1935 -1.7301 -2.1499 10 6 5.4671 -1.5895 -2.8934 11 6 5.2671 -2.4320 -4.1717 12 1 4.9293 -1.8001 -4.9931 13 6 6.5472 -3.1344 -4.5444 14 6 7.1643 -3.9745 -3.6365 15 6 8.3362 -4.6222 -3.9801 16 6 8.8959 -4.4227 -5.2282 17 6 8.2816 -3.5785 -6.1343 18 6 7.1074 -2.9341 -5.7922 19 6 4.1781 -3.4611 -3.8039 20 1 4.5690 -4.4747 -3.8930 21 7 3.0052 -3.2912 -4.6652 22 6 2.1617 -4.3465 -4.8894 23 1 2.3614 -5.3041 -4.4317 24 6 1.0507 -4.1856 -5.7059 25 7 0.8077 -3.0187 -6.2641 26 14 -0.0994 -5.6254 -6.0124 27 1 0.3924 -6.8173 -5.2758 28 1 -1.4637 -5.2785 -5.5391 29 1 -0.1411 -5.9248 -7.4663 30 6 3.8156 -3.1505 -2.3354 31 1 -0.3633 -0.9261 0.4455 32 1 -0.3633 0.8488 0.5793 33 1 -0.3633 0.0773 -1.0247 34 1 1.6113 -1.8584 1.2684 35 1 3.1717 -0.8757 1.2681 36 1 6.2961 -1.9826 -2.3051 37 1 5.6438 -0.5451 -3.1505 38 1 6.7288 -4.1278 -2.6602 39 1 8.8160 -5.2821 -3.2723 40 1 9.8129 -4.9267 -5.4956 41 1 8.7191 -3.4223 -7.1092 42 1 6.6274 -2.2746 -6.5001 43 1 2.8260 -2.4312 -5.0766 44 1 0.0311 -2.9062 -6.8344 45 1 2.7463 -3.2839 -2.1714 46 1 4.3855 -3.7886 -1.6600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081165115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:22 Heat of formation + Delta-G solvation = 28.965213 kcal Electronic energy + Delta-G solvation = -26263.107341 eV Core-core repulsion = 22732.473787 eV Total energy + Delta-G solvation = -3530.633554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17660 -39.17304 -37.56525 -36.25164 -33.93876 -32.56797 -30.89835 -30.75535 -29.04374 -28.09859 -27.44069 -24.94709 -23.68587 -22.71314 -22.29292 -21.26273 -20.61822 -19.62578 -18.70825 -17.45510 -16.95607 -16.61924 -15.66805 -15.53690 -15.04977 -14.77076 -14.53239 -14.13886 -13.82447 -13.53511 -13.35843 -13.22212 -13.14634 -13.06774 -12.81445 -12.56482 -12.29731 -12.06179 -11.78844 -11.56750 -11.37491 -11.25521 -11.05712 -10.94575 -10.76814 -10.65264 -10.49863 -10.23887 -10.11905 -9.93127 -9.80448 -9.49745 -9.13348 -8.76671 -8.54793 -8.33587 -7.05069 -5.85961 -3.16388 1.50144 1.55420 2.78631 3.23238 3.37015 3.43115 3.45345 3.91199 3.95991 4.49308 4.65832 4.87068 4.88958 4.90137 4.96521 5.10606 5.14385 5.20263 5.24730 5.38387 5.41297 5.48889 5.58276 5.60049 5.65280 5.71230 5.72398 5.78650 5.82134 5.83713 5.98759 6.04666 6.11100 6.12145 6.15612 6.20541 6.28474 6.37891 6.41890 6.52635 6.57833 6.63697 6.81636 6.87698 7.15749 7.61784 7.91163 8.30951 8.49702 9.43032 9.97598 10.32344 11.35873 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007584 B = 0.005667 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.108066 B = 4939.889481 C = 7888.534730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.114 0.886 4 C -0.151 4.151 5 C -0.181 4.181 6 H 0.129 0.871 7 C 0.568 3.432 8 O -0.557 6.557 9 N -0.609 5.609 10 C 0.117 3.883 11 C -0.077 4.077 12 H 0.093 0.907 13 C -0.055 4.055 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.131 4.131 17 C -0.120 4.120 18 C -0.110 4.110 19 C 0.177 3.823 20 H 0.071 0.929 21 N -0.713 5.713 22 C -0.246 4.246 23 H 0.073 0.927 24 C -0.007 4.007 25 N -0.927 5.927 26 Si 0.905 3.095 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.072 3.928 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.089 0.911 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.249 0.022 9.364 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.132 0.868 4 C -0.189 4.189 5 C -0.202 4.202 6 H 0.146 0.854 7 C 0.357 3.643 8 O -0.437 6.437 9 N -0.341 5.341 10 C -0.006 4.006 11 C -0.097 4.097 12 H 0.111 0.889 13 C -0.055 4.055 14 C -0.134 4.134 15 C -0.139 4.139 16 C -0.149 4.149 17 C -0.138 4.138 18 C -0.128 4.128 19 C 0.065 3.935 20 H 0.089 0.911 21 N -0.353 5.353 22 C -0.377 4.377 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.575 5.575 26 Si 0.736 3.264 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C -0.053 4.053 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.305 0.526 9.415 13.968 hybrid contribution -0.751 -0.700 -0.561 1.170 sum 9.553 -0.174 8.854 13.026 Atomic orbital electron populations 1.21396 0.92305 1.01863 1.02498 1.22336 0.95208 0.94916 1.01644 0.86781 1.23058 1.02826 1.01676 0.91335 1.22269 0.97666 1.05134 0.95102 0.85363 1.19194 0.84036 0.83318 0.77726 1.90645 1.69177 1.20815 1.63033 1.48779 1.23719 1.11136 1.50431 1.22338 0.86091 1.00801 0.91385 1.21519 0.92988 0.97273 0.97940 0.88885 1.19711 0.95102 0.96728 0.94004 1.21000 0.95698 0.97161 0.99528 1.21067 0.96249 0.99848 0.96706 1.21068 1.00143 0.99400 0.94311 1.21103 0.95933 0.97420 0.99304 1.21121 0.95625 0.99922 0.96164 1.21214 0.87392 0.96277 0.88617 0.91076 1.42484 1.25206 1.12571 1.55022 1.19267 1.02965 0.91150 1.24352 0.90949 1.24748 0.98878 0.96827 0.99966 1.69675 1.29546 1.22326 1.35929 0.86160 0.80874 0.81688 0.77690 1.20467 1.21816 1.21815 1.23598 1.01947 0.80017 0.99786 0.92387 0.91994 0.91630 0.87996 0.88676 0.91229 0.90309 0.86125 0.86426 0.86597 0.86383 0.85996 0.78023 0.93419 0.89301 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 10.19 37.16 0.38 -1.05 16 2 C -0.12 -1.65 5.92 -90.62 -0.54 -2.19 16 3 H 0.11 1.66 7.67 -51.93 -0.40 1.26 16 4 C -0.15 -1.85 9.88 -26.73 -0.26 -2.11 16 5 C -0.18 -2.76 5.30 -91.77 -0.49 -3.25 16 6 H 0.13 2.04 7.06 -51.93 -0.37 1.67 16 7 C 0.57 10.21 7.70 -10.99 -0.08 10.13 16 8 O -0.56 -11.49 16.52 5.55 0.09 -11.40 16 9 N -0.61 -10.23 3.32 -169.30 -0.56 -10.79 16 10 C 0.12 1.80 6.50 -2.41 -0.02 1.79 16 11 C -0.08 -1.24 3.04 -90.37 -0.28 -1.51 16 12 H 0.09 1.65 7.46 -51.93 -0.39 1.26 16 13 C -0.05 -0.79 4.75 -104.62 -0.50 -1.29 16 14 C -0.12 -1.50 8.13 -39.58 -0.32 -1.82 16 15 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 16 C -0.13 -1.51 10.05 -39.58 -0.40 -1.90 16 17 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 18 C -0.11 -1.55 9.68 -39.58 -0.38 -1.93 16 19 C 0.18 3.23 3.15 -66.52 -0.21 3.02 16 20 H 0.07 1.31 7.28 -51.93 -0.38 0.94 16 21 N -0.71 -16.64 5.11 -52.05 -0.27 -16.91 16 22 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 25 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 26 Si 0.90 21.56 29.55 -169.99 -5.02 16.53 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 C 0.07 1.18 6.64 -2.40 -0.02 1.17 16 31 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.05 8.05 -51.93 -0.42 0.63 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.95 6.88 -51.93 -0.36 0.60 16 37 H 0.08 1.28 7.88 -51.93 -0.41 0.87 16 38 H 0.12 1.42 7.73 -52.49 -0.41 1.02 16 39 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 1.66 7.97 -52.49 -0.42 1.24 16 43 H 0.39 9.90 7.55 -40.82 -0.31 9.60 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.09 1.59 6.69 -51.93 -0.35 1.24 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -30.70 378.33 -10.59 -41.29 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.11 Total: 13.39 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.15 Total: -11.48 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.10 Total: -54.04 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.70 -10.59 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081165115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.259 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds