Wall clock time and date at job start Tue Mar 31 2020 12:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 115.56363 * 2 1 4 4 C 1.52996 * 117.49830 * 145.69631 * 2 1 3 5 5 C 1.53000 * 60.00354 * 107.48651 * 4 2 1 6 6 H 1.09002 * 117.49862 * 252.48829 * 5 4 2 7 7 C 1.50695 * 117.50164 * 107.48634 * 5 4 2 8 8 O 1.21286 * 120.00322 * 291.39726 * 7 5 4 9 9 N 1.34781 * 120.00013 * 111.39436 * 7 5 4 10 10 C 1.48145 * 127.83672 * 179.97438 * 9 7 5 11 11 C 1.54395 * 104.61454 * 219.60536 * 10 9 7 12 12 H 1.09002 * 110.34481 * 95.00280 * 11 10 9 13 13 C 1.50698 * 110.43104 * 217.21839 * 11 10 9 14 14 C 1.38238 * 120.00151 * 56.78665 * 13 11 10 15 15 C 1.38234 * 119.99691 * 179.78748 * 14 13 11 16 16 C 1.38231 * 120.00494 * 0.44743 * 15 14 13 17 17 C 1.38242 * 119.99944 * 359.80637 * 16 15 14 18 18 C 1.38237 * 119.99924 * 237.06679 * 13 11 10 19 19 C 1.54281 * 104.95731 * 336.13228 * 11 10 9 20 20 H 1.09001 * 110.34452 * 241.02011 * 19 11 10 21 21 N 1.46502 * 110.34192 * 118.87470 * 19 11 10 22 22 C 1.36941 * 120.00222 * 154.99895 * 21 19 11 23 23 H 1.08002 * 119.99789 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99924 * 180.02562 * 22 21 19 25 25 N 1.31612 * 120.00092 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99598 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47322 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47057 * 119.99842 * 26 24 22 29 29 H 1.48501 * 109.46919 * 239.99460 * 26 24 22 30 30 C 1.48140 * 127.83553 * 359.97438 * 9 7 5 31 31 H 1.09004 * 109.46939 * 205.68680 * 1 2 3 32 32 H 1.08997 * 109.46734 * 325.68526 * 1 2 3 33 33 H 1.08997 * 109.47057 * 85.68608 * 1 2 3 34 34 H 1.08992 * 117.50347 * 359.97438 * 4 2 1 35 35 H 1.09000 * 117.51936 * 214.96455 * 4 2 1 36 36 H 1.08990 * 110.41068 * 100.82226 * 10 9 7 37 37 H 1.09000 * 110.40585 * 338.38365 * 10 9 7 38 38 H 1.07998 * 119.99958 * 0.02562 * 14 13 11 39 39 H 1.08006 * 119.99748 * 180.27431 * 15 14 13 40 40 H 1.07997 * 120.00314 * 179.83382 * 16 15 14 41 41 H 1.07993 * 120.00353 * 179.97438 * 17 16 15 42 42 H 1.07997 * 119.99912 * 359.97194 * 18 13 11 43 43 H 0.97002 * 120.00013 * 334.99814 * 21 19 11 44 44 H 0.97007 * 119.99869 * 180.02562 * 25 24 22 45 45 H 1.08998 * 110.41105 * 21.61541 * 30 9 7 46 46 H 1.08999 * 110.51120 * 259.22609 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1211 0.7648 5 6 2.2365 -1.1210 -0.7652 6 1 1.6115 -1.8587 -1.2685 7 6 3.5292 -0.7811 -1.4610 8 8 3.9719 0.3465 -1.4011 9 7 4.1935 -1.7301 -2.1499 10 6 5.4671 -1.5895 -2.8934 11 6 5.2671 -2.4320 -4.1717 12 1 4.9293 -1.8001 -4.9931 13 6 6.5472 -3.1344 -4.5444 14 6 7.1643 -3.9745 -3.6365 15 6 8.3362 -4.6222 -3.9801 16 6 8.8959 -4.4227 -5.2282 17 6 8.2816 -3.5785 -6.1343 18 6 7.1074 -2.9341 -5.7922 19 6 4.1781 -3.4611 -3.8039 20 1 4.5690 -4.4747 -3.8930 21 7 3.0052 -3.2912 -4.6652 22 6 2.1617 -4.3465 -4.8894 23 1 2.3614 -5.3041 -4.4317 24 6 1.0507 -4.1856 -5.7059 25 7 0.8077 -3.0187 -6.2641 26 14 -0.0994 -5.6254 -6.0124 27 1 0.3924 -6.8173 -5.2758 28 1 -1.4637 -5.2785 -5.5391 29 1 -0.1411 -5.9248 -7.4663 30 6 3.8156 -3.1505 -2.3354 31 1 -0.3633 -0.9261 0.4455 32 1 -0.3633 0.8488 0.5793 33 1 -0.3633 0.0773 -1.0247 34 1 1.6113 -1.8584 1.2684 35 1 3.1717 -0.8757 1.2681 36 1 6.2961 -1.9826 -2.3051 37 1 5.6438 -0.5451 -3.1505 38 1 6.7288 -4.1278 -2.6602 39 1 8.8160 -5.2821 -3.2723 40 1 9.8129 -4.9267 -5.4956 41 1 8.7191 -3.4223 -7.1092 42 1 6.6274 -2.2746 -6.5001 43 1 2.8260 -2.4312 -5.0766 44 1 0.0311 -2.9062 -6.8344 45 1 2.7463 -3.2839 -2.1714 46 1 4.3855 -3.7886 -1.6600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081165115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:21 Heat of formation + Delta-G solvation = 12.699955 kcal Electronic energy + Delta-G solvation = -26263.812655 eV Core-core repulsion = 22732.473787 eV Total energy + Delta-G solvation = -3531.338868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48415 -40.32667 -38.77222 -37.53418 -35.75969 -33.86156 -32.65958 -31.72781 -30.16226 -29.28366 -28.92390 -26.36477 -25.38699 -23.80276 -23.34886 -22.57400 -21.68638 -20.99005 -20.01372 -19.17341 -18.36737 -17.81108 -17.10902 -16.79274 -16.42977 -16.07885 -15.78519 -15.34864 -15.19709 -15.15989 -14.75058 -14.54094 -14.30221 -14.12290 -13.86772 -13.72533 -13.51372 -13.26428 -13.22502 -12.96287 -12.83210 -12.61312 -12.47595 -12.32978 -12.22405 -11.98560 -11.83859 -11.75948 -11.63750 -11.35270 -11.11456 -10.99777 -10.83092 -9.86408 -9.72200 -9.57666 -8.93968 -7.93605 -5.23122 0.50061 0.57715 1.44158 1.48329 1.49156 1.58504 1.93090 2.55805 2.82003 2.92015 3.36974 3.44120 3.61010 3.73709 3.79313 3.85519 3.91887 4.08449 4.14528 4.19748 4.22988 4.30987 4.35413 4.38942 4.42448 4.60475 4.65802 4.69717 4.70818 4.79717 4.83197 4.88792 4.91509 4.97099 5.03489 5.09676 5.16433 5.19302 5.26036 5.36545 5.40174 5.54421 5.66261 5.68906 5.80068 6.19420 6.26401 6.53275 7.10046 7.33135 8.05350 8.29284 9.29799 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007584 B = 0.005667 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.108066 B = 4939.889481 C = 7888.534730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.126 4.126 3 H 0.099 0.901 4 C -0.120 4.120 5 C -0.204 4.204 6 H 0.120 0.880 7 C 0.558 3.442 8 O -0.593 6.593 9 N -0.610 5.610 10 C 0.120 3.880 11 C -0.063 4.063 12 H 0.064 0.936 13 C -0.073 4.073 14 C -0.121 4.121 15 C -0.119 4.119 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.133 4.133 19 C 0.174 3.826 20 H 0.076 0.924 21 N -0.726 5.726 22 C -0.234 4.234 23 H 0.084 0.916 24 C -0.072 4.072 25 N -0.970 5.970 26 Si 0.967 3.033 27 H -0.261 1.261 28 H -0.296 1.296 29 H -0.299 1.299 30 C 0.084 3.916 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.369 0.631 44 H 0.249 0.751 45 H 0.074 0.926 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.747 -2.324 11.467 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 H 0.117 0.883 4 C -0.158 4.158 5 C -0.225 4.225 6 H 0.137 0.863 7 C 0.349 3.651 8 O -0.475 6.475 9 N -0.341 5.341 10 C -0.002 4.002 11 C -0.083 4.083 12 H 0.082 0.918 13 C -0.074 4.074 14 C -0.139 4.139 15 C -0.137 4.137 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.152 4.152 19 C 0.064 3.936 20 H 0.094 0.906 21 N -0.364 5.364 22 C -0.366 4.366 23 H 0.102 0.898 24 C -0.264 4.264 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.185 1.185 28 H -0.224 1.224 29 H -0.227 1.227 30 C -0.041 4.041 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.148 0.852 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.129 0.871 43 H 0.200 0.800 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.850 -1.868 11.554 16.655 hybrid contribution -1.062 0.034 -1.216 1.615 sum 10.788 -1.834 10.338 15.053 Atomic orbital electron populations 1.21398 0.90801 1.03522 1.01959 1.22411 0.96348 0.94203 1.01513 0.88318 1.23184 1.02962 1.00826 0.88793 1.22224 0.96634 1.06468 0.97135 0.86253 1.19725 0.84705 0.82918 0.77706 1.90616 1.70276 1.22068 1.64516 1.48878 1.23967 1.11272 1.50033 1.22397 0.86406 1.00071 0.91355 1.21265 0.93421 0.96414 0.97218 0.91753 1.19613 0.94793 0.98094 0.94908 1.21178 0.96244 0.96780 0.99682 1.21447 0.95523 0.99435 0.97308 1.21475 1.00808 0.98474 0.93910 1.21368 0.95232 0.97184 1.00535 1.21217 0.96883 1.00851 0.96209 1.21420 0.86190 0.97112 0.88906 0.90625 1.42655 1.26509 1.11269 1.55983 1.19668 1.02489 0.91878 1.22526 0.89842 1.25503 1.00975 0.99033 1.00934 1.69841 1.30151 1.24490 1.37586 0.85164 0.78665 0.79544 0.76953 1.18491 1.22363 1.22706 1.23437 1.01683 0.80226 0.98801 0.90902 0.90125 0.93304 0.85206 0.88271 0.88615 0.91735 0.84792 0.83462 0.83662 0.84576 0.87130 0.79956 0.94256 0.90786 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 10.19 71.98 0.73 -1.91 16 2 C -0.13 -3.33 5.92 -10.79 -0.06 -3.39 16 3 H 0.10 2.92 7.67 -2.39 -0.02 2.90 16 4 C -0.12 -2.69 9.88 30.59 0.30 -2.39 16 5 C -0.20 -6.19 5.30 -11.54 -0.06 -6.25 16 6 H 0.12 3.83 7.06 -2.39 -0.02 3.81 16 7 C 0.56 20.37 7.70 87.65 0.67 21.04 16 8 O -0.59 -25.13 16.52 -3.05 -0.05 -25.18 16 9 N -0.61 -20.46 3.32 -807.92 -2.68 -23.14 16 10 C 0.12 3.71 6.50 86.54 0.56 4.28 16 11 C -0.06 -2.06 3.04 -10.63 -0.03 -2.09 16 12 H 0.06 2.46 7.46 -2.39 -0.02 2.44 16 13 C -0.07 -2.09 4.75 -19.87 -0.09 -2.19 16 14 C -0.12 -2.83 8.13 22.27 0.18 -2.65 16 15 C -0.12 -2.36 10.05 22.27 0.22 -2.13 16 16 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 17 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 18 C -0.13 -3.77 9.68 22.27 0.22 -3.55 16 19 C 0.17 6.30 3.15 45.91 0.14 6.44 16 20 H 0.08 2.70 7.28 -2.39 -0.02 2.68 16 21 N -0.73 -34.70 5.11 -318.60 -1.63 -36.32 16 22 C -0.23 -12.20 9.96 84.03 0.84 -11.36 16 23 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 25 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 26 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 27 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 29 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 30 C 0.08 2.64 6.64 86.55 0.57 3.21 16 31 H 0.07 1.38 7.90 -2.38 -0.02 1.36 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.13 2.19 8.05 -2.39 -0.02 2.17 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.10 2.47 6.88 -2.39 -0.02 2.45 16 37 H 0.06 2.18 7.88 -2.39 -0.02 2.16 16 38 H 0.13 2.70 7.73 -2.91 -0.02 2.68 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.11 3.23 7.97 -2.91 -0.02 3.21 16 43 H 0.37 19.92 7.55 -92.71 -0.70 19.22 16 44 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 45 H 0.07 2.60 6.69 -2.39 -0.02 2.59 16 46 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -68.66 378.33 3.34 -65.32 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: 0.27 Total: 42.36 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 5.11 Total: -11.45 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -4.02 Total: -117.84 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.66 3.34 -65.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081165115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.024 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds