Wall clock time and date at job start Tue Mar 31 2020 12:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.99793 * 2 1 4 4 C 1.54330 * 109.88307 * 238.91209 * 2 1 3 5 5 H 1.09004 * 110.71672 * 336.75122 * 4 2 1 6 6 N 1.46491 * 110.72271 * 100.02327 * 4 2 1 7 7 C 1.34785 * 120.00217 * 205.00311 * 6 4 2 8 8 O 1.21281 * 119.99329 * 359.97438 * 7 6 4 9 9 C 1.50692 * 119.99990 * 180.02562 * 7 6 4 10 10 H 1.08997 * 115.55554 * 325.72016 * 9 7 6 11 11 C 1.53006 * 117.49838 * 111.39160 * 9 7 6 12 12 C 1.53002 * 117.49555 * 180.02562 * 9 7 6 13 13 H 1.08997 * 117.49998 * 359.97438 * 12 9 7 14 14 C 1.50704 * 117.49949 * 145.02314 * 12 9 7 15 15 C 1.38234 * 120.00233 * 59.71961 * 14 12 9 16 16 C 1.38238 * 119.99993 * 179.78696 * 15 14 12 17 17 C 1.38230 * 119.99869 * 0.45104 * 16 15 14 18 18 C 1.38239 * 120.00095 * 359.80664 * 17 16 15 19 19 C 1.38235 * 120.00256 * 359.97438 * 18 17 16 20 20 C 1.55156 * 102.94287 * 218.38843 * 4 2 1 21 21 C 1.54911 * 101.58152 * 35.49772 * 20 4 2 22 22 N 1.47022 * 109.88563 * 121.10184 * 2 1 3 23 23 C 1.36930 * 125.64579 * 298.31147 * 22 2 1 24 24 H 1.08006 * 120.00203 * 341.48619 * 23 22 2 25 25 C 1.38815 * 119.99914 * 161.48873 * 23 22 2 26 26 N 1.31622 * 119.99858 * 157.62541 * 25 23 22 27 27 Si 1.86794 * 120.00043 * 337.62994 * 25 23 22 28 28 H 1.48501 * 109.47283 * 84.53728 * 27 25 23 29 29 H 1.48506 * 109.47118 * 204.53906 * 27 25 23 30 30 H 1.48499 * 109.47227 * 324.53852 * 27 25 23 31 31 H 1.09005 * 109.46855 * 181.09037 * 1 2 3 32 32 H 1.08998 * 109.47185 * 301.09277 * 1 2 3 33 33 H 1.08999 * 109.47538 * 61.09326 * 1 2 3 34 34 H 0.96996 * 120.00300 * 25.00149 * 6 4 2 35 35 H 1.08998 * 117.49427 * 214.97585 * 11 9 7 36 36 H 1.08995 * 117.49833 * 359.97167 * 11 9 7 37 37 H 1.07998 * 119.99547 * 0.02562 * 15 14 12 38 38 H 1.07994 * 119.99720 * 180.27641 * 16 15 14 39 39 H 1.07998 * 120.00007 * 179.83308 * 17 16 15 40 40 H 1.07997 * 120.00255 * 180.02562 * 18 17 16 41 41 H 1.07992 * 120.00402 * 180.02562 * 19 18 17 42 42 H 1.08997 * 111.00588 * 153.56906 * 20 4 2 43 43 H 1.09000 * 111.00247 * 277.42516 * 20 4 2 44 44 H 1.08998 * 110.36843 * 81.82869 * 21 20 4 45 45 H 1.08998 * 110.36833 * 204.03917 * 21 20 4 46 46 H 0.97001 * 120.00015 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2429 5 1 1.3050 -1.4458 -1.6184 6 7 2.4554 0.1962 -2.2875 7 6 2.4580 -0.1880 -3.5794 8 8 2.1292 -1.3169 -3.8769 9 6 2.8706 0.7846 -4.6540 10 1 2.6003 1.8253 -4.4752 11 6 4.1863 0.5122 -5.3860 12 6 2.8520 0.2882 -6.1011 13 1 2.5417 -0.7420 -6.2758 14 6 2.4613 1.2755 -7.1705 15 6 3.1995 2.4308 -7.3476 16 6 2.8437 3.3343 -8.3315 17 6 1.7443 3.0871 -9.1320 18 6 1.0029 1.9344 -8.9514 19 6 1.3613 1.0287 -7.9705 20 6 3.2876 -1.5141 -0.6926 21 6 2.8146 -1.8794 0.7365 22 7 2.0300 -0.7142 1.1838 23 6 1.8052 -0.3557 2.4861 24 1 1.4867 0.6489 2.7225 25 6 1.9866 -1.2835 3.5026 26 7 2.2078 -0.8755 4.7343 27 14 1.9171 -3.1110 3.1224 28 1 3.2475 -3.5689 2.6474 29 1 1.5459 -3.8584 4.3508 30 1 0.9025 -3.3588 2.0667 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3633 0.5307 0.8800 33 1 -0.3634 0.4967 -0.8996 34 1 2.7187 1.0990 -2.0496 35 1 4.7812 1.3738 -5.6891 36 1 4.7536 -0.3702 -5.0901 37 1 4.0565 2.6255 -6.7199 38 1 3.4231 4.2346 -8.4728 39 1 1.4647 3.7943 -9.8989 40 1 0.1441 1.7411 -9.5770 41 1 0.7824 0.1280 -7.8296 42 1 3.4851 -2.4109 -1.2799 43 1 4.1654 -0.8687 -0.6606 44 1 2.1887 -2.7715 0.7126 45 1 3.6717 -2.0358 1.3915 46 1 2.3350 -1.5238 5.4445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088903193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:11 Heat of formation + Delta-G solvation = 39.877178 kcal Electronic energy + Delta-G solvation = -25415.399738 eV Core-core repulsion = 21885.239363 eV Total energy + Delta-G solvation = -3530.160375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46123 -39.43719 -38.07612 -36.38976 -34.13643 -32.13039 -31.26800 -30.87775 -30.71785 -29.37535 -25.73814 -24.19648 -24.01708 -23.59335 -22.65816 -21.19512 -20.61156 -20.27252 -19.37807 -17.76577 -17.00704 -16.88779 -16.13811 -15.45939 -15.26645 -15.03437 -14.93319 -14.56468 -14.25441 -13.98007 -13.67592 -13.37955 -13.20062 -13.00483 -12.85379 -12.65801 -12.24279 -12.14166 -11.90000 -11.61019 -11.55668 -11.31834 -11.21218 -11.05382 -10.86250 -10.78839 -10.69273 -10.48147 -10.14416 -10.00118 -9.79784 -9.44634 -9.22837 -8.88131 -8.84062 -8.66474 -7.09734 -5.96001 -3.26959 0.97979 1.09554 2.48587 3.10532 3.35293 3.39338 3.49306 3.51707 3.80636 4.26097 4.45868 4.54317 4.55381 4.63675 4.69124 4.78980 4.85094 4.95042 5.00748 5.14584 5.17423 5.22941 5.28813 5.32387 5.40268 5.59550 5.64103 5.68212 5.74385 5.82447 5.84604 5.93319 6.03873 6.16178 6.17301 6.21189 6.29624 6.33982 6.38943 6.46018 6.61409 6.68548 6.72283 6.79477 6.96928 7.60170 7.68471 8.27581 8.30565 8.80938 9.67107 10.14582 11.19849 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.002440 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.759020 B =11473.409011 C =11613.617619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.046 0.954 4 C 0.134 3.866 5 H 0.097 0.903 6 N -0.710 5.710 7 C 0.543 3.457 8 O -0.543 6.543 9 C -0.175 4.175 10 H 0.125 0.875 11 C -0.144 4.144 12 C -0.085 4.085 13 H 0.127 0.873 14 C -0.051 4.051 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.109 4.109 20 C -0.140 4.140 21 C 0.111 3.889 22 N -0.601 5.601 23 C -0.238 4.238 24 H 0.093 0.907 25 C 0.023 3.977 26 N -0.908 5.908 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.303 1.303 30 H -0.276 1.276 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.401 0.599 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.063 0.937 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 7.535 -26.685 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.064 0.936 4 C 0.029 3.971 5 H 0.115 0.885 6 N -0.360 5.360 7 C 0.328 3.672 8 O -0.420 6.420 9 C -0.197 4.197 10 H 0.143 0.857 11 C -0.181 4.181 12 C -0.104 4.104 13 H 0.145 0.855 14 C -0.051 4.051 15 C -0.138 4.138 16 C -0.136 4.136 17 C -0.144 4.144 18 C -0.136 4.136 19 C -0.127 4.127 20 C -0.180 4.180 21 C -0.014 4.014 22 N -0.327 5.327 23 C -0.365 4.365 24 H 0.110 0.890 25 C -0.176 4.176 26 N -0.551 5.551 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.231 1.231 30 H -0.202 1.202 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.236 0.764 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.027 6.708 -26.593 27.501 hybrid contribution -0.062 -0.606 0.158 0.630 sum 1.965 6.102 -26.435 27.201 Atomic orbital electron populations 1.22200 0.97180 1.01588 1.00497 1.21091 0.92893 0.95249 0.85980 0.93604 1.22145 0.97058 0.91120 0.86811 0.88465 1.45936 1.67945 1.16315 1.05798 1.19546 0.77146 0.87579 0.82883 1.90692 1.48268 1.20718 1.82362 1.22360 1.04534 1.00362 0.92408 0.85721 1.23137 0.89629 1.04184 1.01185 1.21083 1.00692 0.99582 0.89011 0.85503 1.19158 0.95512 0.94537 0.95905 1.21090 1.00008 0.94015 0.98699 1.21131 0.97326 0.99305 0.95847 1.21171 0.95867 0.97549 0.99777 1.21161 0.99817 0.94468 0.98157 1.21043 0.96426 0.99828 0.95439 1.23132 0.97651 1.00091 0.97077 1.21954 0.95252 0.91128 0.93071 1.44814 1.57521 1.28887 1.01485 1.18574 1.42568 0.96755 0.78615 0.88981 1.24988 1.00110 0.97672 0.94834 1.69835 1.50742 1.33958 1.00614 0.87009 0.78261 0.87428 0.76157 1.21204 1.23058 1.20166 0.93038 0.91981 0.94072 0.76423 0.87422 0.87616 0.85800 0.86030 0.86168 0.85984 0.85789 0.91326 0.90913 0.95518 0.91933 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.13 37.15 0.34 -2.48 16 2 C 0.16 2.93 3.48 -66.95 -0.23 2.70 16 3 H 0.05 0.83 7.72 -51.93 -0.40 0.43 16 4 C 0.13 2.23 2.84 -66.10 -0.19 2.04 16 5 H 0.10 1.77 7.26 -51.93 -0.38 1.39 16 6 N -0.71 -9.44 5.18 -52.03 -0.27 -9.71 16 7 C 0.54 7.36 7.61 -10.99 -0.08 7.27 16 8 O -0.54 -9.38 15.90 5.56 0.09 -9.29 16 9 C -0.18 -1.73 5.82 -91.77 -0.53 -2.27 16 10 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 11 C -0.14 -1.20 9.56 -26.71 -0.26 -1.46 16 12 C -0.09 -0.83 5.56 -91.75 -0.51 -1.34 16 13 H 0.13 1.40 7.67 -51.93 -0.40 1.00 16 14 C -0.05 -0.47 5.61 -104.62 -0.59 -1.05 16 15 C -0.12 -0.96 9.29 -39.58 -0.37 -1.33 16 16 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 17 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 18 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 19 C -0.11 -0.98 9.74 -39.58 -0.39 -1.36 16 20 C -0.14 -2.46 6.77 -24.58 -0.17 -2.62 16 21 C 0.11 2.43 4.69 -2.53 -0.01 2.41 16 22 N -0.60 -14.10 2.94 -162.57 -0.48 -14.58 16 23 C -0.24 -6.57 10.19 -15.06 -0.15 -6.73 16 24 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 25 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 26 N -0.91 -27.74 13.97 55.49 0.78 -26.96 16 27 Si 0.88 22.63 24.27 -169.99 -4.13 18.51 16 28 H -0.29 -7.06 6.49 56.52 0.37 -6.70 16 29 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 30 H -0.28 -7.04 6.66 56.52 0.38 -6.66 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.19 8.04 -51.93 -0.42 0.78 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 4.35 8.37 -40.82 -0.34 4.01 16 35 H 0.11 0.67 6.18 -51.93 -0.32 0.35 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.12 0.78 6.03 -52.49 -0.32 0.47 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.03 0.62 5.58 -51.93 -0.29 0.33 16 45 H 0.06 1.44 6.64 -51.93 -0.34 1.10 16 46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -32.77 369.31 -9.92 -42.70 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.05 Total: 3.32 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -4.42 Total: -9.55 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.03 Total: -51.25 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.13 Total: 18.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.77 -9.92 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088903193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.573 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds